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Update app.py
Browse files
app.py
CHANGED
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@@ -6,8 +6,9 @@ from slowapi import Limiter
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from slowapi.util import get_remote_address
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import tensorflow as tf
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from tensorflow.keras.models import Model, load_model
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from tensorflow.keras.preprocessing.image import img_to_array
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from tensorflow.keras.applications.densenet import preprocess_input
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import numpy as np
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from PIL import Image
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import matplotlib.pyplot as plt
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@@ -26,7 +27,7 @@ HEATMAP_EXPIRY = 300 # 5 minutes in seconds
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app = FastAPI(
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title="ChexNet Medical Imaging API",
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description="API for chest X-ray analysis with Grad-CAM visualization",
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version="2.
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)
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# Rate limiter setup
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@@ -48,13 +49,6 @@ app.add_middleware(
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# Session storage for heatmaps
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heatmap_store: Dict[str, dict] = {}
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# Load model
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try:
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model = load_model('Densenet.h5')
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model.load_weights("pretrained_model.h5")
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except Exception as e:
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raise RuntimeError(f"Failed to load model: {str(e)}")
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# Model configuration
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layer_name = 'conv5_block16_concat'
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class_names = [
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@@ -63,6 +57,41 @@ class_names = [
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'Pneumonia', 'Fibrosis', 'Edema', 'Consolidation', 'No Finding'
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]
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def cleanup_expired_heatmaps():
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"""Remove heatmaps older than HEATMAP_EXPIRY seconds"""
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now = datetime.now()
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@@ -73,7 +102,7 @@ def cleanup_expired_heatmaps():
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for sid in expired:
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del heatmap_store[sid]
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def generate_gradcam(
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"""Generate Grad-CAM heatmap overlay"""
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img_array = img_to_array(img)
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img_array = np.expand_dims(img_array, axis=0)
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@@ -103,12 +132,12 @@ def generate_gradcam(model, img, layer_name):
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heatmap_img = heatmap_img.resize(original_img.size)
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return Image.blend(original_img, heatmap_img, 0.5)
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def process_predictions(predictions
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"""Format predictions with top 4 classes"""
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decoded = []
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for pred in predictions:
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top_indices = pred.argsort()[-4:][::-1]
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decoded.append([(
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return decoded
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def preprocess_image(file_bytes):
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@@ -119,14 +148,21 @@ def preprocess_image(file_bytes):
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@app.get("/", include_in_schema=False)
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async def root():
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return {
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@app.get("/health")
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async def health_check():
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return {
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"status": "healthy",
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"
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"
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}
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@app.get("/model/classes")
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@@ -136,26 +172,15 @@ async def get_class_names():
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@app.post("/analyze")
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@limiter.limit("5/minute")
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async def analyze_image(request: Request, file: UploadFile = File(...)):
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"""
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Analyze chest X-ray image and return predictions with Grad-CAM visualization
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Parameters:
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- file: Upload JPEG/PNG image (max 10MB)
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Returns:
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- predictions: Top 4 diagnoses with confidence scores
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- heatmap_url: URL to retrieve Grad-CAM visualization
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"""
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# Validate input
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if not file.content_type.startswith('image/'):
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raise HTTPException(400, "Only image files are accepted")
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if file.size > MAX_FILE_SIZE:
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raise HTTPException(413, f"
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try:
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img = preprocess_image(
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# Prepare input tensor
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img_array = img_to_array(img)
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@@ -164,10 +189,10 @@ async def analyze_image(request: Request, file: UploadFile = File(...)):
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# Get predictions
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predictions = model.predict(img_array)
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decoded = process_predictions(predictions
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# Generate Grad-CAM
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heatmap = generate_gradcam(
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# Store heatmap with session ID
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session_id = str(uuid.uuid4())
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@@ -185,16 +210,13 @@ async def analyze_image(request: Request, file: UploadFile = File(...)):
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"predictions": decoded[0],
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"heatmap_url": f"{request.base_url}static/heatmap/{session_id}"
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}
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except Exception as e:
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raise HTTPException(500, f"Processing failed: {str(e)}")
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@app.get("/static/heatmap/{session_id}")
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async def get_heatmap(session_id: str):
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"""Retrieve Grad-CAM visualization by session ID"""
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if session_id not in heatmap_store:
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raise HTTPException(404, "Session expired or invalid")
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return StreamingResponse(
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io.BytesIO(heatmap_store[session_id]['image']),
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media_type="image/png",
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@@ -203,7 +225,6 @@ async def get_heatmap(session_id: str):
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@app.get("/model/info")
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async def model_info():
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"""Get model metadata"""
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return {
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"model_type": "DenseNet121",
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"input_size": "540x540",
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@@ -212,16 +233,15 @@ async def model_info():
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"rate_limit": "5 requests/minute"
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}
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# Error handlers
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@app.exception_handler(HTTPException)
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async def
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return JSONResponse(
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status_code=exc.status_code,
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content={"error": exc.detail}
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)
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@app.exception_handler(Exception)
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async def
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return JSONResponse(
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status_code=500,
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content={"error": "Internal server error"}
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from slowapi.util import get_remote_address
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import tensorflow as tf
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from tensorflow.keras.models import Model, load_model
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from tensorflow.keras.layers import Input
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from tensorflow.keras.preprocessing.image import img_to_array
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from tensorflow.keras.applications.densenet import DenseNet121, preprocess_input
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import numpy as np
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from PIL import Image
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import matplotlib.pyplot as plt
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app = FastAPI(
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title="ChexNet Medical Imaging API",
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description="API for chest X-ray analysis with Grad-CAM visualization",
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version="2.3.0"
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)
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# Rate limiter setup
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# Session storage for heatmaps
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heatmap_store: Dict[str, dict] = {}
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# Model configuration
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layer_name = 'conv5_block16_concat'
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class_names = [
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'Pneumonia', 'Fibrosis', 'Edema', 'Consolidation', 'No Finding'
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]
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def build_model():
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"""Build DenseNet121 model architecture"""
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base_model = DenseNet121(weights=None, include_top=False, input_shape=(None, None, 3))
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x = base_model.output
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x = tf.keras.layers.GlobalAveragePooling2D()(x)
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predictions = tf.keras.layers.Dense(len(class_names), activation='sigmoid')(x)
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return Model(inputs=base_model.input, outputs=predictions)
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def load_model_with_fallback():
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"""Attempt multiple strategies to load the model"""
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try:
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# Strategy 1: Try direct loading
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model = load_model('Densenet.h5', compile=False)
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model.load_weights('pretrained_model.h5')
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return model
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except Exception as e:
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print(f"Direct loading failed: {e}")
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try:
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# Strategy 2: Build architecture and load weights
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model = build_model()
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model.load_weights('pretrained_model.h5')
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return model
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except Exception as e:
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print(f"Architecture rebuild failed: {e}")
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raise RuntimeError("All model loading strategies failed")
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# Load model
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try:
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model = load_model_with_fallback()
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print("✅ Model loaded successfully!")
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except Exception as e:
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print(f"❌ Model loading failed: {e}")
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raise
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def cleanup_expired_heatmaps():
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"""Remove heatmaps older than HEATMAP_EXPIRY seconds"""
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now = datetime.now()
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for sid in expired:
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del heatmap_store[sid]
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def generate_gradcam(img):
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"""Generate Grad-CAM heatmap overlay"""
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img_array = img_to_array(img)
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img_array = np.expand_dims(img_array, axis=0)
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heatmap_img = heatmap_img.resize(original_img.size)
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return Image.blend(original_img, heatmap_img, 0.5)
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def process_predictions(predictions):
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"""Format predictions with top 4 classes"""
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decoded = []
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for pred in predictions:
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top_indices = pred.argsort()[-4:][::-1]
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decoded.append([(class_names[i], float(pred[i])) for i in top_indices])
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return decoded
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def preprocess_image(file_bytes):
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@app.get("/", include_in_schema=False)
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async def root():
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return {
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"message": "ChexNet API is operational",
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"endpoints": {
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"docs": "/docs",
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"health": "/health",
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"analyze": "POST /analyze"
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}
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}
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@app.get("/health")
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async def health_check():
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return {
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"status": "healthy" if model else "unhealthy",
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"timestamp": datetime.now().isoformat(),
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"model_loaded": bool(model)
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}
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@app.get("/model/classes")
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@app.post("/analyze")
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@limiter.limit("5/minute")
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async def analyze_image(request: Request, file: UploadFile = File(...)):
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if not file.content_type.startswith('image/'):
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raise HTTPException(400, "Only image files are accepted")
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if file.size > MAX_FILE_SIZE:
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raise HTTPException(413, f"Max file size is {MAX_FILE_SIZE//(1024*1024)}MB")
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try:
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contents = await file.read()
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img = preprocess_image(contents)
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# Prepare input tensor
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img_array = img_to_array(img)
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# Get predictions
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predictions = model.predict(img_array)
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decoded = process_predictions(predictions)
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# Generate Grad-CAM
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heatmap = generate_gradcam(img)
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# Store heatmap with session ID
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session_id = str(uuid.uuid4())
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"predictions": decoded[0],
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"heatmap_url": f"{request.base_url}static/heatmap/{session_id}"
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}
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except Exception as e:
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raise HTTPException(500, f"Processing failed: {str(e)}")
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@app.get("/static/heatmap/{session_id}")
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async def get_heatmap(session_id: str):
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if session_id not in heatmap_store:
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raise HTTPException(404, "Session expired or invalid")
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return StreamingResponse(
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io.BytesIO(heatmap_store[session_id]['image']),
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media_type="image/png",
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@app.get("/model/info")
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async def model_info():
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return {
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"model_type": "DenseNet121",
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"input_size": "540x540",
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"rate_limit": "5 requests/minute"
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}
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@app.exception_handler(HTTPException)
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async def http_handler(request: Request, exc: HTTPException):
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return JSONResponse(
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status_code=exc.status_code,
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content={"error": exc.detail}
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)
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@app.exception_handler(Exception)
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async def generic_handler(request: Request, exc: Exception):
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return JSONResponse(
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status_code=500,
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content={"error": "Internal server error"}
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