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Update app.py
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app.py
CHANGED
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@@ -6,9 +6,10 @@ from slowapi import Limiter
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from slowapi.util import get_remote_address
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import tensorflow as tf
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from tensorflow.keras.models import Model, load_model
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from tensorflow.keras.layers import Input
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from tensorflow.keras.preprocessing.image import img_to_array
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from tensorflow.keras.applications.densenet import
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import numpy as np
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from PIL import Image
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import matplotlib.pyplot as plt
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@@ -27,7 +28,7 @@ HEATMAP_EXPIRY = 300 # 5 minutes in seconds
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app = FastAPI(
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title="ChexNet Medical Imaging API",
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description="API for chest X-ray analysis with Grad-CAM visualization",
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version="
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)
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# Rate limiter setup
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@@ -57,37 +58,47 @@ class_names = [
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'Pneumonia', 'Fibrosis', 'Edema', 'Consolidation', 'No Finding'
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]
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def
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"""Build
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base_model = DenseNet121(
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x = base_model.output
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x =
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return Model(inputs=base_model.input, outputs=predictions)
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def
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"""
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try:
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#
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model =
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model.load_weights('pretrained_model.h5')
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return model
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except Exception as e:
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print(f"
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try:
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#
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model =
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return model
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except Exception as e:
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print(f"
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raise RuntimeError("
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# Load model
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try:
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model =
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print("✅ Model loaded successfully!")
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except Exception as e:
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print(f"❌ Model loading failed: {e}")
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raise
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@@ -133,10 +144,11 @@ def generate_gradcam(img):
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return Image.blend(original_img, heatmap_img, 0.5)
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def process_predictions(predictions):
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"""Format predictions with top
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decoded = []
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for pred in predictions:
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decoded.append([(class_names[i], float(pred[i])) for i in top_indices])
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return decoded
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@@ -162,7 +174,8 @@ async def health_check():
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return {
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"status": "healthy" if model else "unhealthy",
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"timestamp": datetime.now().isoformat(),
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"model_loaded": bool(model)
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}
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@app.get("/model/classes")
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@@ -172,6 +185,7 @@ async def get_class_names():
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@app.post("/analyze")
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@limiter.limit("5/minute")
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async def analyze_image(request: Request, file: UploadFile = File(...)):
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if not file.content_type.startswith('image/'):
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raise HTTPException(400, "Only image files are accepted")
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@@ -215,6 +229,7 @@ async def analyze_image(request: Request, file: UploadFile = File(...)):
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@app.get("/static/heatmap/{session_id}")
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async def get_heatmap(session_id: str):
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if session_id not in heatmap_store:
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raise HTTPException(404, "Session expired or invalid")
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return StreamingResponse(
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@@ -225,10 +240,12 @@ async def get_heatmap(session_id: str):
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@app.get("/model/info")
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async def model_info():
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return {
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"model_type": "DenseNet121",
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"input_size": "540x540",
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"classes": len(class_names),
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"gradcam_layer": layer_name,
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"rate_limit": "5 requests/minute"
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}
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from slowapi.util import get_remote_address
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import tensorflow as tf
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from tensorflow.keras.models import Model, load_model
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from tensorflow.keras.layers import Input, GlobalAveragePooling2D, Dense
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from tensorflow.keras.applications import DenseNet121
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from tensorflow.keras.preprocessing.image import img_to_array
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from tensorflow.keras.applications.densenet import preprocess_input
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import numpy as np
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from PIL import Image
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import matplotlib.pyplot as plt
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app = FastAPI(
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title="ChexNet Medical Imaging API",
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description="API for chest X-ray analysis with Grad-CAM visualization",
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version="3.0.0"
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)
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# Rate limiter setup
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'Pneumonia', 'Fibrosis', 'Edema', 'Consolidation', 'No Finding'
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]
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def build_custom_model():
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"""Build model with correct output shape matching your weights"""
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base_model = DenseNet121(
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weights=None,
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include_top=False,
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input_shape=(None, None, 3)
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)
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x = base_model.output
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x = GlobalAveragePooling2D()(x)
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# Match the output shape in your pretrained weights (14 classes)
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predictions = Dense(14, activation='sigmoid')(x)
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return Model(inputs=base_model.input, outputs=predictions)
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def load_model_with_retry():
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"""Enhanced model loading with shape compatibility handling"""
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try:
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# First try loading with custom architecture
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model = build_custom_model()
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model.load_weights('pretrained_model.h5')
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return model
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except Exception as e:
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print(f"Loading with custom architecture failed: {e}")
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try:
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# Fallback to direct loading with compile=False
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model = load_model('Densenet.h5', compile=False)
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# Ensure output layer matches our class names
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if model.layers[-1].output_shape[-1] != len(class_names):
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print("Adjusting output layer to match class names")
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x = model.layers[-2].output
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predictions = Dense(len(class_names), activation='sigmoid')(x)
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model = Model(inputs=model.input, outputs=predictions)
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return model
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except Exception as e:
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print(f"All loading attempts failed: {e}")
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raise RuntimeError(f"Could not load model: {str(e)}")
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# Load model
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try:
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model = load_model_with_retry()
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print("✅ Model loaded successfully!")
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print(f"Model output shape: {model.output_shape}")
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except Exception as e:
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print(f"❌ Model loading failed: {e}")
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raise
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return Image.blend(original_img, heatmap_img, 0.5)
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def process_predictions(predictions):
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"""Format predictions with top classes"""
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decoded = []
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for pred in predictions:
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# Get indices sorted by probability (descending)
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top_indices = np.argsort(pred)[::-1][:len(class_names)]
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decoded.append([(class_names[i], float(pred[i])) for i in top_indices])
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return decoded
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return {
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"status": "healthy" if model else "unhealthy",
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"timestamp": datetime.now().isoformat(),
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"model_loaded": bool(model),
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"model_output_shape": str(model.output_shape) if model else "N/A"
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}
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@app.get("/model/classes")
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@app.post("/analyze")
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@limiter.limit("5/minute")
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async def analyze_image(request: Request, file: UploadFile = File(...)):
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"""Analyze chest X-ray image"""
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if not file.content_type.startswith('image/'):
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raise HTTPException(400, "Only image files are accepted")
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@app.get("/static/heatmap/{session_id}")
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async def get_heatmap(session_id: str):
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"""Retrieve Grad-CAM visualization"""
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if session_id not in heatmap_store:
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raise HTTPException(404, "Session expired or invalid")
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return StreamingResponse(
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@app.get("/model/info")
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async def model_info():
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"""Get model metadata"""
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return {
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"model_type": "DenseNet121",
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"input_size": "540x540",
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"classes": len(class_names),
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"output_shape": str(model.output_shape),
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"gradcam_layer": layer_name,
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"rate_limit": "5 requests/minute"
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}
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