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varientlens / backend /tests

505 kB

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History: 19 commits

Codex

Founder-variant catalogue + curator-context notes

a2e2385 18 days ago

fixtures
Public-data VUS-reclassification benchmark — 200 variants 21 days ago
__init__.py

0 Bytes
Initial VariantLens clinical readiness scaffold about 1 month ago
conftest.py

893 Bytes
Initial VariantLens clinical readiness scaffold about 1 month ago
test_acmg_combiner.py

4.68 kB
Initial VariantLens clinical readiness scaffold about 1 month ago
test_chunker.py

1.04 kB
Initial VariantLens clinical readiness scaffold about 1 month ago
test_clinvar_residue.py

8.16 kB
Add runtime ClinVar residue-level lookup for PS1 / PM5 28 days ago
test_founder_variants.py

2.18 kB
Founder-variant catalogue + curator-context notes 18 days ago
test_full_text_fetcher.py

19.1 kB
Expand RAG sources: bioRxiv, PDF extraction, Tier-2 TDM stubs, OMIM client 26 days ago
test_gnomad_hgvs_fallback.py

4.72 kB
Fix silent-failure bug: gnomAD lookup never returns empty without explanation 27 days ago
test_hallucination_guard.py

6.2 kB
Initial VariantLens clinical readiness scaffold about 1 month ago
test_known_variants.py

3.88 kB
Initial VariantLens clinical readiness scaffold about 1 month ago
test_narrative.py

4.56 kB
Five new VCEPs + curator triage + evidence-narrative generator 18 days ago
test_normalization.py

1.73 kB
Initial VariantLens clinical readiness scaffold about 1 month ago
test_omim.py

6.54 kB
Expand RAG sources: bioRxiv, PDF extraction, Tier-2 TDM stubs, OMIM client 26 days ago
test_prompt_specificity.py

2.63 kB
Context-aware PM2 upgrade + tightened RAG prompt (87.4% → 94% baseline) 27 days ago
test_rag_query.py

3.27 kB
RAG: expand PubMed query with protein forms; full-text on by default 24 days ago
test_rules_engine.py

25.6 kB
ACMG rule fixes: PP2 implementation, BP4 AM-concordance, PVS1 consequence-gate 24 days ago
test_triage.py

4.58 kB
Five new VCEPs + curator triage + evidence-narrative generator 18 days ago
test_vcep_coverage.py

2.74 kB
Five new VCEPs + curator triage + evidence-narrative generator 18 days ago