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1de2a7d | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 | #!/bin/sh
echo "Job Start Time is `date "+%Y/%m/%d -- %H:%M:%S"`"
taxonNameFile=~/yytao/16S/16S.names.txt
cd ~/yytao/16S/remove1
less $taxonNameFile | while read line
do
query=$line
queryfile=query.$query
taxafile=taxa.$line
treefile=remove1.nwk.$query
outputfile=apples_jplace.$query
python ~/yytao/package/apples/run_apples.py -D -s $taxafile -q $queryfile -t $treefile > $outputfile
echo $query" finished"
done
echo "Job Finish Time is `date "+%Y/%m/%d -- %H:%M:%S"`"
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