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1de2a7d | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 | #!/bin/sh
echo "Job Start Time is `date "+%Y/%m/%d -- %H:%M:%S"`"
taxonNameFile=~/yytao/16S/16S.names.txt
cd ~/yytao/16S/remove1
less $taxonNameFile | while read line
do
query=$line
queryfile=query.$query
cat $queryfile taxa.$line > taxafile
treefile=tipars.binary_tree.$query
treefile_opt=tipars.binary_tree.opt.$query
logfile=tipars.log.$query
~/yytao/package/fasttree/FastTreeDbl -gamma -nt -gtr -nome -mllen -intree $treefile -log $logfile taxafile > $treefile_opt
echo $query" finished"
done
echo "Job Finish Time is `date "+%Y/%m/%d -- %H:%M:%S"`"
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