Fixed environment startup version

.python-version

@@ -1 +1 @@
-3.10
+3.14

Dockerfile

@@ -1,4 +1,4 @@
-FROM python:3.10
+FROM python:3.14
 
 WORKDIR /code
 

app.py

@@ -6,6 +6,7 @@ import numpy as np
 
 import matplotlib.pyplot as plt
 from matplotlib.figure import Figure
+from matplotlib.patches import Circle
 import matplotlib as mpl
 
 from pypdf import PdfWriter
@@ -92,8 +93,10 @@ def draw_tray(
     fontsize=14,
     plaque_index: str | None = None,
     print_coordinates: bool = False,
+    print_index: bool = False,
     coord_bf: bool = False,
     coord_font_size: int = 10,
+    leaf_size: int|None = None,
 ):
     t = np.zeros((row_count * discs_per_leaf, col_count))
     if is_valid_forbibden_position(forbidden_position):
@@ -121,9 +124,39 @@ def draw_tray(
 
     def is_valid(a, i, j):
         return a is not None and 0 <= i < a.shape[0] and 0 <= j < a.shape[1]
+    
+    leaf_index = 0
 
     for i, line in enumerate(axii):
         for j, ax in enumerate(line):
+            if t[i, j] != 1:
+                leaf_index +=1
+            # Draw background
+            if i == 0 and j == 0 and plaque_index is not None and t[i, j] == 1:
+                ax.set_facecolor("xkcd:light grey")
+            else:
+                if t[i, j] == 1:
+                    ax.set_facecolor("xkcd:black")
+                elif color_data is None:
+                    match t[i, j]:
+                        case 0:
+                            ax.set_facecolor("xkcd:white")
+                        case 2:
+                            ax.set_facecolor("xkcd:salmon")
+                elif is_valid(color_data, i, j) and np.isnan(color_data[i, j]) != True:
+                    ax.set_facecolor(colors[int(color_data[i, j].astype(int))])
+            # Draw leafs
+            if leaf_size is not None and leaf_size > 0 and t[i, j] != 1:
+                ax.add_patch(
+                    Circle(
+                        xy=(0.5,0.5), 
+                        radius=leaf_size / 2, 
+                        edgecolor="green",
+                        facecolor="lime",
+                        linewidth=1,
+                    )
+                )
+            # Write text
             if print_coordinates is True:
                 ax.text(
                     left + 0.02,
@@ -145,6 +178,16 @@ def draw_tray(
                     transform_rotates_text=True,
                     fontweight="bold" if coord_bf is True else "normal",
                 )
+            if print_index is True:
+                ax.text(
+                    0.5,
+                    0.5,
+                    str(leaf_index),
+                    dict(size=fontsize),
+                    horizontalalignment="center",
+                    verticalalignment="center",
+                    transform=ax.transAxes,
+                )
             if i == 0 and j == 0 and plaque_index is not None and t[i, j] == 1:
                 ax.set_facecolor("xkcd:light grey")
                 ax.text(
@@ -155,31 +198,20 @@ def draw_tray(
                     horizontalalignment="center",
                     verticalalignment="center",
                 )
-            else:
-                if t[i, j] == 1:
-                    ax.set_facecolor("xkcd:black")
-                elif color_data is None:
-                    match t[i, j]:
-                        case 0:
-                            ax.set_facecolor("xkcd:white")
-                        case 2:
-                            ax.set_facecolor("xkcd:salmon")
-                elif is_valid(color_data, i, j) and np.isnan(color_data[i, j]) != True:
-                    ax.set_facecolor(colors[int(color_data[i, j].astype(int))])
-                if (
-                    text_data is not None
-                    and is_valid(text_data, i, j)
-                    and isinstance(text_data[i, j], str) is True
-                ):
-                    ax.text(
-                        0.5,
-                        0.5,
-                        text_data[i, j],
-                        dict(size=fontsize),
-                        horizontalalignment="center",
-                        verticalalignment="center",
-                        transform=ax.transAxes,
-                    )
+            if (
+                text_data is not None
+                and is_valid(text_data, i, j)
+                and isinstance(text_data[i, j], str) is True
+            ):
+                ax.text(
+                    0.5,
+                    0.5,
+                    text_data[i, j],
+                    dict(size=fontsize),
+                    horizontalalignment="center",
+                    verticalalignment="center",
+                    transform=ax.transAxes,
+                )
             ax.set_xticklabels([])
             ax.set_yticklabels([])
             ax.set_xticks([])

main.py

@@ -0,0 +1,6 @@
+def main():
+    print("Hello from vitis-exp-builder!")
+
+
+if __name__ == "__main__":
+    main()

pyproject.toml

@@ -3,13 +3,15 @@ name = "vitis-exp-builder"
 version = "0.1.0"
 description = "Add your description here"
 readme = "README.md"
-requires-python = ">=3.10"
+requires-python = ">=3.14"
 dependencies = [
+    "black>=26.3.1",
     "ipywidgets-bokeh>=1.7.0",
     "jupyter>=1.1.1",
+    "jupyter-bokeh>=4.0.5",
     "matplotlib>=3.10.8",
-    "numpy>=2.2.6",
-    "pandas>=2.3.3",
+    "numpy>=2.4.4",
+    "pandas>=3.0.2",
     "panel>=1.8.10",
     "pypdf>=6.9.2",
     "watchfiles>=1.1.1",

requirements.txt

@@ -25,6 +25,8 @@ babel==2.18.0
     # via jupyterlab-server
 beautifulsoup4==4.14.3
     # via nbconvert
+black==26.3.1
+    # via vitis-exp-builder
 bleach==6.3.0
     # via
     #   nbconvert
@@ -32,6 +34,7 @@ bleach==6.3.0
 bokeh==3.9.0
     # via
     #   ipywidgets-bokeh
+    #   jupyter-bokeh
     #   panel
 certifi==2026.2.25
     # via
@@ -42,21 +45,20 @@ cffi==2.0.0
     # via
     #   argon2-cffi-bindings
     #   pyzmq
-charset-normalizer==3.4.6
+charset-normalizer==3.4.7
     # via requests
+click==8.3.2
+    # via black
 colorama==0.4.6 ; sys_platform == 'win32'
     # via
+    #   click
     #   ipython
     #   tqdm
 comm==0.2.3
     # via
     #   ipykernel
     #   ipywidgets
-contourpy==1.3.2 ; python_full_version < '3.11'
-    # via
-    #   bokeh
-    #   matplotlib
-contourpy==1.3.3 ; python_full_version >= '3.11'
+contourpy==1.3.3
     # via
     #   bokeh
     #   matplotlib
@@ -68,10 +70,6 @@ decorator==5.2.1
     # via ipython
 defusedxml==0.7.1
     # via nbconvert
-exceptiongroup==1.3.1 ; python_full_version < '3.11'
-    # via
-    #   anyio
-    #   ipython
 executing==2.2.1
     # via stack-data
 fastjsonschema==2.21.2
@@ -98,27 +96,18 @@ ipykernel==6.31.0
     #   jupyter
     #   jupyter-console
     #   jupyterlab
-ipython==8.39.0 ; python_full_version < '3.11'
-    # via
-    #   ipykernel
-    #   ipywidgets
-    #   jupyter-console
-ipython==9.10.1 ; python_full_version == '3.11.*'
-    # via
-    #   ipykernel
-    #   ipywidgets
-    #   jupyter-console
-ipython==9.12.0 ; python_full_version >= '3.12'
+ipython==9.12.0
     # via
     #   ipykernel
     #   ipywidgets
     #   jupyter-console
-ipython-pygments-lexers==1.1.1 ; python_full_version >= '3.11'
+ipython-pygments-lexers==1.1.1
     # via ipython
 ipywidgets==8.1.8
     # via
     #   ipywidgets-bokeh
     #   jupyter
+    #   jupyter-bokeh
 ipywidgets-bokeh==1.7.0
     # via vitis-exp-builder
 isoduration==20.11.0
@@ -132,7 +121,7 @@ jinja2==3.1.6
     #   jupyterlab
     #   jupyterlab-server
     #   nbconvert
-json5==0.13.0
+json5==0.14.0
     # via jupyterlab-server
 jsonpointer==3.1.1
     # via jsonschema
@@ -145,6 +134,8 @@ jsonschema-specifications==2025.9.1
     # via jsonschema
 jupyter==1.1.1
     # via vitis-exp-builder
+jupyter-bokeh==4.0.5
+    # via vitis-exp-builder
 jupyter-client==8.8.0
     # via
     #   ipykernel
@@ -165,7 +156,7 @@ jupyter-core==5.9.1
     #   nbformat
 jupyter-events==0.12.0
     # via jupyter-server
-jupyter-lsp==2.3.0
+jupyter-lsp==2.3.1
     # via jupyterlab
 jupyter-server==2.17.0
     # via
@@ -216,13 +207,15 @@ mdurl==0.1.2
     # via markdown-it-py
 mistune==3.2.0
     # via nbconvert
-narwhals==2.18.1
+mypy-extensions==1.1.0
+    # via black
+narwhals==2.19.0
     # via
     #   bokeh
     #   panel
 nbclient==0.10.4
     # via nbconvert
-nbconvert==7.17.0
+nbconvert==7.17.1
     # via
     #   jupyter
     #   jupyter-server
@@ -239,24 +232,16 @@ notebook-shim==0.2.4
     # via
     #   jupyterlab
     #   notebook
-numpy==2.2.6 ; python_full_version < '3.11'
+numpy==2.4.4
     # via
     #   bokeh
     #   contourpy
     #   matplotlib
     #   pandas
     #   vitis-exp-builder
-numpy==2.4.3 ; python_full_version >= '3.11'
-    # via
-    #   bokeh
-    #   contourpy
-    #   matplotlib
-    #   pandas
-    #   vitis-exp-builder
-overrides==7.7.0 ; python_full_version < '3.12'
-    # via jupyter-server
 packaging==26.0
     # via
+    #   black
     #   bokeh
     #   ipykernel
     #   jupyter-events
@@ -266,11 +251,7 @@ packaging==26.0
     #   matplotlib
     #   nbconvert
     #   panel
-pandas==2.3.3 ; python_full_version < '3.11'
-    # via
-    #   panel
-    #   vitis-exp-builder
-pandas==3.0.1 ; python_full_version >= '3.11'
+pandas==3.0.2
     # via
     #   panel
     #   vitis-exp-builder
@@ -278,20 +259,24 @@ pandocfilters==1.5.1
     # via nbconvert
 panel==1.8.10
     # via vitis-exp-builder
-param==2.3.2
+param==2.3.3
     # via
     #   panel
     #   pyviz-comms
 parso==0.8.6
     # via jedi
+pathspec==1.0.4
+    # via black
 pexpect==4.9.0 ; sys_platform != 'emscripten' and sys_platform != 'win32'
     # via ipython
-pillow==12.1.1
+pillow==12.2.0
     # via
     #   bokeh
     #   matplotlib
 platformdirs==4.9.4
-    # via jupyter-core
+    # via
+    #   black
+    #   jupyter-core
 prometheus-client==0.24.1
     # via jupyter-server
 prompt-toolkit==3.0.52
@@ -308,7 +293,7 @@ pure-eval==0.2.3
     # via stack-data
 pycparser==3.0 ; implementation_name != 'PyPy'
     # via cffi
-pygments==2.19.2
+pygments==2.20.0
     # via
     #   ipython
     #   ipython-pygments-lexers
@@ -324,10 +309,10 @@ python-dateutil==2.9.0.post0
     #   jupyter-client
     #   matplotlib
     #   pandas
-python-json-logger==4.0.0
+python-json-logger==4.1.0
     # via jupyter-events
-pytz==2026.1.post1 ; python_full_version < '3.11'
-    # via pandas
+pytokens==0.4.1
+    # via black
 pyviz-comms==3.0.6
     # via panel
 pywinpty==3.0.3 ; os_name == 'nt'
@@ -350,7 +335,7 @@ referencing==0.37.0
     #   jsonschema
     #   jsonschema-specifications
     #   jupyter-events
-requests==2.33.0
+requests==2.33.1
     # via
     #   jupyterlab-server
     #   panel
@@ -386,8 +371,6 @@ terminado==0.18.1
     #   jupyter-server-terminals
 tinycss2==1.4.0
     # via bleach
-tomli==2.4.1 ; python_full_version < '3.11'
-    # via jupyterlab
 tornado==6.5.5
     # via
     #   bokeh
@@ -416,16 +399,9 @@ traitlets==5.14.3
     #   nbformat
 typing-extensions==4.15.0
     # via
-    #   anyio
-    #   async-lru
     #   beautifulsoup4
-    #   exceptiongroup
-    #   ipython
-    #   mistune
     #   panel
-    #   pypdf
-    #   referencing
-tzdata==2025.3
+tzdata==2026.1
     # via
     #   arrow
     #   pandas
@@ -449,5 +425,5 @@ websocket-client==1.9.0
     # via jupyter-server
 widgetsnbextension==4.0.15
     # via ipywidgets
-xyzservices==2025.11.0
+xyzservices==2026.3.0
     # via bokeh