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2aabc58 eb0abff 2aabc58 eb0abff 2aabc58 eb0abff 2aabc58 3475963 2aabc58 eb0abff 2aabc58 eb0abff 2aabc58 a9aec68 eb0abff a9aec68 2aabc58 eb0abff 2aabc58 eb0abff 2aabc58 eb0abff 2aabc58 eb0abff 2aabc58 eb0abff 2aabc58 089c7d1 a9aec68 089c7d1 a9aec68 089c7d1 a9aec68 2aabc58 a9aec68 2aabc58 a9aec68 eb0abff a9aec68 5b2ebd8 a9aec68 5b2ebd8 a9aec68 5b2ebd8 a9aec68 2aabc58 b67309b eb0abff 2aabc58 eb0abff b67309b eb0abff b67309b eb0abff 3475963 b67309b eb0abff f3a87c7 916f12b eb0abff f3a87c7 eb0abff 2aabc58 eb0abff 2aabc58 fa43f54 eb0abff fa43f54 62f8380 fa43f54 62f8380 eb0abff fa43f54 eb0abff fa43f54 eb0abff fa43f54 f3a87c7 eb0abff b67309b eb0abff b67309b f3a87c7 eb0abff a9aec68 eb0abff f3a87c7 eb0abff 2aabc58 a9aec68 eb0abff 2aabc58 eb0abff 2aabc58 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 | """Storage backend: Hugging Face Dataset repo, with local filesystem fallback for dev.
Layout inside the dataset repo:
submissions/<trial>__<user>__<stamp>.json (immutable: the submission)
reviews/<trial>__<user>__<stamp>/<stamp>__<rev>.json (one file per review)
Submissions are never rewritten. Each review is a brand-new file, so multiple
reviewers can review the same submission concurrently with no write conflict.
The "current status" of a submission is derived from its most recent review.
Env vars (set in HF Space → Settings → Variables and secrets):
HF_TOKEN - HF user access token with Write permission
HF_DATASET_REPO - e.g. "ttt-77/tdb-intake-submissions"
HF_DATASET_BRANCH - optional, defaults to "main"
ADMIN_PASSWORD - shared password for the Admin page
If HF_TOKEN or HF_DATASET_REPO is missing, all I/O goes to ./data/... so local
dev works without HF credentials.
"""
from __future__ import annotations
import io
import json
import os
import re
from datetime import datetime, timezone
from pathlib import Path
from typing import Any, Dict, List, Optional
import requests
from huggingface_hub import HfApi
from huggingface_hub.utils import HfHubHTTPError
from lib.schema import question_content_hash
HF_TOKEN = os.environ.get("HF_TOKEN", "").strip()
HF_DATASET_REPO = os.environ.get("HF_DATASET_REPO", "").strip()
HF_DATASET_BRANCH = os.environ.get("HF_DATASET_BRANCH", "main").strip() or "main"
ADMIN_PASSWORD = os.environ.get("ADMIN_PASSWORD", "")
hf_configured = bool(HF_TOKEN and HF_DATASET_REPO)
_api = HfApi(token=HF_TOKEN) if hf_configured else None
LOCAL_DATA_DIR = Path("data")
SUBMISSIONS_PREFIX = "submissions"
REVIEWS_PREFIX = "reviews"
def _safe(s: str) -> str:
return re.sub(r"[^a-zA-Z0-9_\-]", "_", (s or "").strip())
def _now_iso() -> str:
return datetime.now(timezone.utc).isoformat()
def _stamp(iso: Optional[str] = None) -> str:
return (iso or _now_iso()).replace(":", "-").replace(".", "-")
def _pair_dir(trial_id: str, username: str) -> str:
"""Folder holding all versions for a (trial_id, username) pair."""
return f"{SUBMISSIONS_PREFIX}/{_safe(trial_id)}__{_safe(username)}"
def _base_id(submission_id: str) -> str:
"""Path of a submission relative to the submissions/ prefix, without .json.
'submissions/NCT99__jdoe/2026-...json' -> 'NCT99__jdoe/2026-...'
Used to key the matching reviews/ folder so reviews stay grouped per
(pair, version).
"""
s = submission_id
if s.startswith(f"{SUBMISSIONS_PREFIX}/"):
s = s[len(SUBMISSIONS_PREFIX) + 1 :]
if s.endswith(".json"):
s = s[:-5]
return s
# ---- low-level read/write/list (HF or local) -----------------------------
def _hf_upload_json(path_in_repo: str, payload: Dict[str, Any], commit_message: str) -> None:
assert _api is not None
content = json.dumps(payload, indent=2, ensure_ascii=False).encode("utf-8")
_api.upload_file(
path_or_fileobj=io.BytesIO(content),
path_in_repo=path_in_repo,
repo_id=HF_DATASET_REPO,
repo_type="dataset",
revision=HF_DATASET_BRANCH,
commit_message=commit_message,
)
def _hf_read_json(path_in_repo: str) -> Optional[Dict[str, Any]]:
url = (
f"https://huggingface.co/datasets/{HF_DATASET_REPO}"
f"/resolve/{HF_DATASET_BRANCH}/{path_in_repo}"
)
r = requests.get(url, headers={"Authorization": f"Bearer {HF_TOKEN}"}, timeout=20)
if r.status_code == 404:
return None
r.raise_for_status()
return r.json()
def _write_json(path_in_repo: str, payload: Dict[str, Any], commit_message: str) -> None:
if hf_configured:
_hf_upload_json(path_in_repo, payload, commit_message)
return
p = LOCAL_DATA_DIR / path_in_repo
p.parent.mkdir(parents=True, exist_ok=True)
p.write_text(json.dumps(payload, indent=2, ensure_ascii=False), encoding="utf-8")
def _read_json(path_in_repo: str) -> Optional[Dict[str, Any]]:
if hf_configured:
return _hf_read_json(path_in_repo)
p = LOCAL_DATA_DIR / path_in_repo
if not p.exists():
return None
try:
return json.loads(p.read_text(encoding="utf-8"))
except Exception:
return None
def _all_files() -> List[str]:
"""List every file path in the repo (HF) or under ./data (local)."""
if hf_configured:
assert _api is not None
try:
return _api.list_repo_files(
repo_id=HF_DATASET_REPO,
repo_type="dataset",
revision=HF_DATASET_BRANCH,
)
except HfHubHTTPError as e:
if e.response is not None and e.response.status_code == 404:
return []
raise
if not LOCAL_DATA_DIR.exists():
return []
return [p.relative_to(LOCAL_DATA_DIR).as_posix() for p in LOCAL_DATA_DIR.rglob("*.json")]
# ---- public API ----------------------------------------------------------
def save_submission(trial_id: str, username: str, comparison: Dict[str, Any]) -> Dict[str, Any]:
"""Save a NEW version for (trial_id, username).
Every submit creates a new version file under
submissions/<trial>__<user>/<stamp>.json — nothing is overwritten, so the
full version history is kept and any version can be loaded back.
"""
now = _now_iso()
version = _stamp(now)
submission_id = f"{_pair_dir(trial_id, username)}/{version}.json"
record = {
"submissionId": submission_id,
"version": version,
"submittedAt": now,
"trial_id": trial_id,
"username": username,
"comparison": comparison,
}
_write_json(
submission_id,
record,
f"Add submission: {trial_id} — {username} ({version})",
)
url = (
f"https://huggingface.co/datasets/{HF_DATASET_REPO}"
f"/blob/{HF_DATASET_BRANCH}/{submission_id}"
if hf_configured
else None
)
return {"submissionId": submission_id, "url": url, "record": record, "version": version}
def list_versions(
trial_id: str, username: str, all_files: Optional[List[str]] = None
) -> List[Dict[str, Any]]:
"""All saved versions for (trial_id, username), newest first.
Each item: submissionId, version, submittedAt, num_questions, status,
review_count, reviews (full timeline for that version).
"""
prefix = f"{_pair_dir(trial_id, username)}/"
files = all_files if all_files is not None else _all_files()
paths = sorted(
(f for f in files if f.startswith(prefix) and f.endswith(".json")),
reverse=True,
)
out: List[Dict[str, Any]] = []
for p in paths:
rec = _read_json(p)
if not rec:
continue
prompts = (rec.get("comparison") or {}).get("prompts") or []
reviews = list_reviews(p, all_files=files)
latest = reviews[-1] if reviews else None
out.append(
{
"submissionId": p,
"version": rec.get("version", ""),
"submittedAt": rec.get("submittedAt", ""),
"num_questions": len(prompts),
"status": latest["status"] if latest else "pending",
"review_count": len(reviews),
"reviews": reviews,
}
)
return out
def add_review(
submission_id: str,
status: str,
reviewer: str,
note: str = "",
question_id: str = "",
) -> Dict[str, Any]:
"""Append a review as its own file under reviews/<base>/.
Each review is a new file (never overwrites), so concurrent reviews by
different people cannot conflict. If ``question_id`` is given, the review
targets that specific question; otherwise it is an overall (whole-version)
review.
"""
base = _base_id(submission_id)
now = _now_iso()
review = {
"submissionId": submission_id,
"at": now,
"reviewer": reviewer,
"status": status,
"note": note,
"question_id": question_id,
}
# Snapshot the reviewed question's content so we can later tell if it was
# edited (which invalidates this review).
if question_id:
sub = get_submission(submission_id)
prompts = (sub.get("comparison") or {}).get("prompts") or [] if sub else []
q = next((x for x in prompts if x.get("id") == question_id), None)
if q is not None:
review["question_hash"] = question_content_hash(q)
qtag = _safe(question_id) if question_id else "all"
review_path = (
f"{REVIEWS_PREFIX}/{base}/{_stamp(now)}__{_safe(reviewer) or 'anon'}__{qtag}.json"
)
target = f"Q {question_id}" if question_id else "overall"
_write_json(
review_path,
review,
f"Review ({status}, {target}) by {reviewer or 'anon'} on {base}",
)
return review
def list_pair_reviews(
pair_key: str, all_files: Optional[List[str]] = None
) -> List[Dict[str, Any]]:
"""Every review across ALL versions of a (trial_id, username) pair.
pair_key is '<trial>__<user>'. Each returned review is tagged with the
`version` it was made on. Oldest first.
"""
prefix = f"{REVIEWS_PREFIX}/{pair_key}/"
files = all_files if all_files is not None else _all_files()
paths = sorted(f for f in files if f.startswith(prefix) and f.endswith(".json"))
out: List[Dict[str, Any]] = []
for p in paths:
rec = _read_json(p)
if not rec:
continue
# p = reviews/<pair>/<version>/<revfile>.json
parts = p[len(REVIEWS_PREFIX) + 1 :].split("/")
rec = dict(rec)
rec["version"] = parts[1] if len(parts) >= 3 else ""
out.append(rec)
out.sort(key=lambda r: r.get("at", ""))
return out
def pair_reviews(
trial_id: str, username: str, all_files: Optional[List[str]] = None
) -> List[Dict[str, Any]]:
"""All reviews across all versions for a (trial_id, username), oldest first.
Convenience wrapper around list_pair_reviews for callers that have the raw
trial_id / username (e.g. the public form).
"""
pair_key = f"{_safe(trial_id)}__{_safe(username)}"
return list_pair_reviews(pair_key, all_files=all_files)
def list_reviews(submission_id: str, all_files: Optional[List[str]] = None) -> List[Dict[str, Any]]:
"""All reviews for a single submission version, oldest first."""
base = _base_id(submission_id)
prefix = f"{REVIEWS_PREFIX}/{base}/"
files = all_files if all_files is not None else _all_files()
paths = sorted(f for f in files if f.startswith(prefix) and f.endswith(".json"))
reviews = [r for r in (_read_json(p) for p in paths) if r]
reviews.sort(key=lambda r: r.get("at", ""))
return reviews
def get_submission(submission_id: str) -> Optional[Dict[str, Any]]:
if not submission_id.startswith(f"{SUBMISSIONS_PREFIX}/"):
return None
return _read_json(submission_id)
def _pair_key_from_path(p: str) -> str:
"""Group key for a submission path = its (trial_id, username) folder.
'submissions/NCT99__jdoe/2026-...json' -> 'NCT99__jdoe'
'submissions/foo.json' (legacy flat) -> 'foo'
"""
rest = p[len(SUBMISSIONS_PREFIX) + 1 :]
if "/" in rest:
return rest.rsplit("/", 1)[0]
return rest[:-5] if rest.endswith(".json") else rest
def list_submissions() -> List[Dict[str, Any]]:
"""Latest version of each (trial_id, username), with its review timeline.
Reviewers see one row per trial — only the newest version. Each item:
submissionId, trial_id, username, version, submittedAt, status, reviewedAt,
reviewer, review_count, reviews (list), submission (full record).
"""
files = _all_files()
sub_paths = [
f for f in files if f.startswith(f"{SUBMISSIONS_PREFIX}/") and f.endswith(".json")
]
# Keep only the newest version path per pair (stamps sort lexically).
latest_by_pair: Dict[str, str] = {}
for sp in sub_paths:
key = _pair_key_from_path(sp)
if key not in latest_by_pair or sp > latest_by_pair[key]:
latest_by_pair[key] = sp
result: List[Dict[str, Any]] = []
for key, sp in latest_by_pair.items():
sub = _read_json(sp)
if not sub:
continue
# Overall reviews (not tied to a question) on the latest version drive
# the current status.
reviews = list_reviews(sp, all_files=files)
overall = [r for r in reviews if not r.get("question_id")]
latest = overall[-1] if overall else None
# All reviews across every version of this trial (tagged with version).
all_reviews = list_pair_reviews(key, all_files=files)
result.append(
{
"submissionId": sp,
"trial_id": sub.get("trial_id", ""),
"username": sub.get("username", ""),
"version": sub.get("version", ""),
"submittedAt": sub.get("submittedAt", ""),
"status": latest["status"] if latest else "pending",
"reviewedAt": latest["at"] if latest else "",
"reviewer": latest["reviewer"] if latest else "",
"review_count": len(reviews),
"reviews": reviews,
"all_reviews": all_reviews,
"submission": sub,
}
)
result.sort(key=lambda r: r.get("submittedAt", ""), reverse=True)
return result
# ---- admin gate ----------------------------------------------------------
def check_admin_password(supplied: str) -> bool:
if not ADMIN_PASSWORD:
return True # no password configured = open (dev mode)
return supplied == ADMIN_PASSWORD
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