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Upload required 4 files
Browse files- Dockerfile +34 -0
- app.py +107 -0
- process_data.R +26 -0
- requirements.txt +6 -0
Dockerfile
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# Use a base image that includes both Python and R. rocker/r-ver is a popular choice for R, with an R base and Python installed.
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FROM rocker/r-ver:4.1.0
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# Install Python, pip, and system dependencies for your Python packages, e.g., for matplotlib.
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# Dependencies being installed:
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# - libfreetype6-dev, libxft-dev for matplotlib
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# - libpcre2-dev for -lpcre2-8, liblzma-dev for -llzma, libbz2-dev for -lbz2, libicu-dev for -licuuc and -licui18n for rpy2 compilation requirements
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RUN apt-get update && apt-get install -y \
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python3-pip \
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python3-dev \
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libfreetype6-dev \
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libxft-dev \
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libpcre2-dev \
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liblzma-dev \
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libbz2-dev \
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libicu-dev \
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&& rm -rf /var/lib/apt/lists/*
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# Install R packages
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RUN R -e "install.packages(c('relaimpo', 'readxl'), repos='http://cran.rstudio.com/')"
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# Copy the requirements.txt file, your app script, and the R script into the container.
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COPY requirements.txt /requirements.txt
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COPY app.py /app.py
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COPY process_data.R /process_data.R
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# Install Python dependencies from requirements.txt.
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RUN pip3 install --no-cache-dir -r /requirements.txt
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# Expose the port Gradio runs on.
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EXPOSE 7860
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# Command to run your app.
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CMD ["python3", "/app.py"]
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app.py
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# Import libraries
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import subprocess
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import pandas as pd
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import matplotlib.pyplot as plt
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import seaborn as sns
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import gradio as gr
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import tempfile
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import logging
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from PIL import Image
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import io
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logging.basicConfig(level=logging.INFO)
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def analyze_excel(file_path):
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# Temporary file for the textual output
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with tempfile.NamedTemporaryFile(
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delete=True, suffix=".txt", mode="r+"
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) as text_output_temp:
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text_output_path = text_output_temp.name
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# Temporary file for the CSV data
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with tempfile.NamedTemporaryFile(
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delete=True, suffix=".csv", mode="r+"
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) as csv_output_temp:
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csv_output_path = csv_output_temp.name
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# Call the R script, passing paths for both outputs
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command = [
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"Rscript",
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"process_data.R",
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file_path,
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text_output_path,
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csv_output_path,
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]
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try:
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subprocess.run(command, check=True)
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except subprocess.CalledProcessError as e:
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logging.error("R script failed with error: %s", e)
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return None, "Error executing R script. Please check the input file format."
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# Read the detailed textual output
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with open(text_output_path, "r") as file:
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calc_relaimpo_text = file.read()
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# Read the CSV data into a DataFrame for plotting
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results_df = pd.read_csv(csv_output_path)
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# Create a new column for plotting with values Importance * 100
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results_df["Importance_percent"] = results_df["Importance"] * 100
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# Plotting
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fig, ax = plt.subplots(figsize=(12, 10))
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sns.barplot(
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x="Importance_percent", y="Predictor", data=results_df, color="skyblue", ax=ax
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)
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# Add percentage annotations to the bars
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for index, value in enumerate(results_df["Importance_percent"]):
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ax.text(value + 1, index, f"{value:.2f}%", va="center", fontsize=8)
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plt.xlabel("Relative Importance (%)")
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plt.ylabel("Predictors")
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plt.title("Relative Importance Ranking of Predictors (LMG)")
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# Adjust the x-axis limit to create space for annotations
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plt.xlim(0, (results_df["Importance"].max() * 100) + 10)
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plt.tight_layout()
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# Convert plot to image data
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img_data = io.BytesIO()
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plt.savefig(img_data, format="png")
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img_data.seek(0)
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img = Image.open(img_data)
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plt.close(fig) # Close the figure to free memory
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# Return both the image and the detailed textual output
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return img, calc_relaimpo_text
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# Define instruction text and the Gradio app interface as before
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instruction_text = """
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## Instructions
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Please upload an Excel file with your data. The file should contain columns for Stability, Development, Relationship, Benefit, Vision, and Competence, along with Trust as the target variable.
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The app will analyze the data, calculate the relative importance of predictors using Shapley values, and display the results.
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**Note:** The analysis may take a few seconds. Please wait for the results to be displayed.
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"""
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iface = gr.Interface(
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fn=analyze_excel,
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inputs=["file"],
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outputs=[
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gr.Image(type="pil", label="Shapley Regression Plot"),
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gr.Textbox(label="Calculation Output"),
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],
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title="TrustLogic: Trust Driver Analysis",
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description=instruction_text,
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allow_flagging="never",
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)
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iface.launch(server_name="0.0.0.0")
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process_data.R
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library(readxl)
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library(relaimpo)
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args <- commandArgs(trailingOnly = TRUE)
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input_file <- args[1]
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output_text_file <- args[2]
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output_csv_file <- args[3]
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# Read the data
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data <- read_excel(input_file)
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# Fit the model
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model <- lm(Trust ~ Stability + Development + Relationship + Benefit + Vision + Competence, data = data)
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# Calculate relative importance
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calc_relaimpo <- calc.relimp(model, type = "lmg", rela = TRUE)
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# Write the detailed output to a text file
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full_output <- capture.output(print(calc_relaimpo))
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writeLines(full_output, output_text_file)
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# Extract relevant data from calc_relaimpo for plotting
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results <- data.frame(Predictor = names(calc_relaimpo$lmg), Importance = calc_relaimpo$lmg)
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# Save the plotting data to a CSV file
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write.csv(results, file = output_csv_file, row.names = FALSE)
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requirements.txt
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pandas
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matplotlib
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seaborn
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gradio
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Pillow
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openpyxl
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