Spaces:
Sleeping
Sleeping
add logic for 0 ssms
Browse files- methods/utilities.py +8 -2
methods/utilities.py
CHANGED
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@@ -187,8 +187,14 @@ def get_ssm_frequency(
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for mut in mutation_list:
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print('mutation: {}'.format(mut))
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for ce in cancer_entities:
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-
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print('total case count: {}'.format(
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total_case_count[ce]))
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for mut in mutation_list:
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print('mutation: {}'.format(mut))
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for ce in cancer_entities:
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try:
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print('number of cases with mutation: {}'.format(
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ssm_statistics[mut][ce]["ssm_counts"]))
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except Exception as e:
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# if no ssms, this will be empty
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print('number of cases with mutation: {}'.format(
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ssm_statistics
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))
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print('total case count: {}'.format(
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total_case_count[ce]))
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