aatu18 commited on
Commit
1d3a1f0
·
verified ·
1 Parent(s): 36b6975

add logic for 0 ssms

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Files changed (1) hide show
  1. methods/utilities.py +8 -2
methods/utilities.py CHANGED
@@ -187,8 +187,14 @@ def get_ssm_frequency(
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  for mut in mutation_list:
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  print('mutation: {}'.format(mut))
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  for ce in cancer_entities:
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- print('number of cases with mutation: {}'.format(
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- ssm_statistics[mut][ce]["ssm_counts"]))
 
 
 
 
 
 
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  print('total case count: {}'.format(
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  total_case_count[ce]))
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  for mut in mutation_list:
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  print('mutation: {}'.format(mut))
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  for ce in cancer_entities:
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+ try:
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+ print('number of cases with mutation: {}'.format(
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+ ssm_statistics[mut][ce]["ssm_counts"]))
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+ except Exception as e:
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+ # if no ssms, this will be empty
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+ print('number of cases with mutation: {}'.format(
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+ ssm_statistics
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+ ))
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  print('total case count: {}'.format(
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  total_case_count[ce]))
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