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Commit History
add some handling around 0 cases with cnvs
d33069e
verified
add logic for 0 ssms
1d3a1f0
verified
clarify single gene cnv frequency
3516642
verified
print log for single gene cnvs
580fcb1
verified
clean up utils
fe1b300
verified
clean up utilities
4d11372
verified
return gdc_qag_base_stat after postprocessing
f851e96
verified
utility functions for natural lang output
1c051fc
verified
move step 5 logs for ssm freq
d2d678f
verified
add step 5 to logs
fa13c21
verified
add step 5 logs for ssm_freq
0bd0f4d
verified
add build API call statements to logs
f3d8341
verified
handle spacy warnings, upgrade in subsequent releases
5bf77b4
verified
cleanup logs for single and joint ssm freq
2d3f79d
verified
streamline logs, move prints
a7e35ec
verified
more clean up
556e5a5
verified
test logging for ssm frequencies and cleanup
eb74dd9
verified
clean up cnv info
31b49ce
verified
fix typo
9521181
verified
more formatting changes
04a7c12
verified
formatting error
b77ccf0
verified
add debug information about API calls to logs
8bdcd0a
verified
no ssms, set to 0 counts, for melanoma type queries
c6a0fb1
verified
update ssm freq methods in utilities
4d2fe3c
verified
optimize get ssm counts
48cd1b2
verified
order final columns in output
4cba529
verified
remove intent inference from util
5fbbce6
verified
push change to infer intent
c1ab6b1
verified
copy to cuda in app.py code
a89a6fc
verified
cuda model changes
b758d7d
Michael
commited on
move zero GPU decorator to generation
20f7df2
verified
add spaces.GPU when loading model to cuda
aa4f11e
verified
keep copy to cuda and add device map auto
8ef467a
verified
move copy model to cuda in pipeline code
4a3823b
verified
test device_map auto
5974cda
verified
comment out torch.float16, retest
3af0765
verified
add token to bert model
557d5ce
Michael
commited on
update data loading
f93f173
Michael
commited on
dummy commit
b914322
Michael
commited on
use load_dataset
eb7a7b2
Michael
commited on
add methods
0b31237
Michael
commited on