gpustat on pip

add gpustats python package

move step 5 logs for ssm freq

add output for step 7

Update app.py

test remove gpustats warning, final output clean up

format completed step in log

add step 5 to logs

add step 5 logs for ssm_freq

add step numbers

add build API call statements to logs

update toml, remove gpustats

remove gpustat

add pynvml for gpustats

revert back

not collecting gpustats

update requirements.txt

add gpustat and sklearn to toml

minor updates to results colnames, remove unwanted prints

handle spacy warnings, upgrade in subsequent releases

log for final steps

cleanup logs for single and joint ssm freq

streamline logs, move prints

more clean up

test logging for ssm frequencies and cleanup

clean up cnv info

fix typo

more formatting changes

formatting error

add debug information about API calls to logs

Update app.py

token-fix (#3)

add_pre_commit_hooks (#2)

tjw2: Adding two license files to meet open source compliance

update instructions

expand index for multiple cancer entities

check result for melanoma

no ssms, set to 0 counts, for melanoma type queries

simplified filtering for melanoma and other broad cancer types

add examples where llama base stat is not 0

fix formatting

dummy commit

change df to dict

finish up result string

fix string escape

update pipeline response

add example queries

update ssm freq methods in utilities

optimize get ssm counts

delete old_app file