Upload 4 files
Browse files- .gitattributes +1 -0
- Dockerfile +8 -0
- app.py +115 -0
- papers_index.faiss +3 -0
- requirements.txt +7 -0
.gitattributes
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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papers_index.faiss filter=lfs diff=lfs merge=lfs -text
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Dockerfile
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FROM python:3.11
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WORKDIR /app
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COPY . /app
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RUN pip install --no-cache-dir -r requirements.txt
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EXPOSE 7860
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CMD ["uvicorn", "app:app", "--host", "0.0.0.0", "--port", "7860"]
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app.py
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from fastapi import FastAPI, HTTPException, Query
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from fastapi.middleware.cors import CORSMiddleware
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from pydantic import BaseModel
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import pandas as pd
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import numpy as np
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import faiss
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from sentence_transformers import SentenceTransformer
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import os
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import gdown
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app = FastAPI(title="Research Paper Recommendation API")
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app.add_middleware(
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CORSMiddleware,
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allow_origins=["*"], # Allow Next.js frontend
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allow_credentials=True,
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allow_methods=["*"],
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allow_headers=["*"],
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)
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print("🔄 Loading dataset and FAISS index...")
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def download_from_drive(file_id, output):
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if not os.path.exists(output):
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print(f"📥 Downloading {output} from Google Drive...")
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url = f"https://drive.google.com/uc?id={file_id}"
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gdown.download(url, output, quiet=False)
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else:
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print(f"✅ {output} already exists, skipping download.")
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download_from_drive("1ME6Bb5WjVbIYr4-0iF0kUa35-82DTsUn", "papers_with_embeddings.csv")
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download_from_drive("1IwOkhBu-odM2GYmvZdS1Q5AHkf0pDV02", "embeddings.npy")
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download_from_drive("1MEB_4ZGunbxi65jW9UN0L8bnp9VUCH8s", "papers_index.faiss")
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try:
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df = pd.read_csv("papers_with_embeddings.csv")
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embeddings = np.load("embeddings.npy")
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index = faiss.read_index("papers_index.faiss")
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except Exception as e:
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raise RuntimeError(f" Failed to load files: {e}")
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model = SentenceTransformer("allenai/specter2_base")
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print(f" Loaded {len(df)} papers and FAISS index with {index.ntotal} vectors.")
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class Paper(BaseModel):
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id: str
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title: str
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authors: str
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update_date: str
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abstract: str | None = None
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category_code: str | None = None
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def get_recommendations(paper_id: str, top_k: int = 6):
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paper = df[df["id"].astype(str) == str(paper_id)]
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if paper.empty:
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raise HTTPException(status_code=404, detail="Paper not found")
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text = f"{paper.iloc[0]['title']}. {paper.iloc[0]['abstract']}"
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query_vec = model.encode([text], normalize_embeddings=True)
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D, I = index.search(query_vec, top_k + 1)
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recs = df.iloc[I[0]].copy()
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recs["similarity"] = D[0]
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# Exclude the query paper itself
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recs = recs[recs["id"].astype(str) != str(paper_id)]
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return recs[["id", "title", "authors", "update_date", "abstract", "similarity"]].head(top_k).to_dict(orient="records")
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def search_papers(query_text: str, top_k: int = 50):
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if not query_text.strip():
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raise HTTPException(status_code=400, detail="Query cannot be empty.")
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query_vec = model.encode([query_text], normalize_embeddings=True)
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D, I = index.search(query_vec, top_k)
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recs = df.iloc[I[0]].copy()
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recs["similarity"] = D[0]
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# Include abstract in output
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return recs[["id", "title", "authors", "update_date", "abstract", "similarity"]].to_dict(orient="records")
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@app.get("/")
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def root():
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return {"message": "SPECTER + FAISS Recommendation API is running 🚀"}
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@app.get("/paper/{paper_id}")
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def get_paper(paper_id: str):
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paper = df[df["id"].astype(str) == str(paper_id)]
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if paper.empty:
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raise HTTPException(status_code=404, detail="Paper not found")
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return paper.iloc[0].to_dict()
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@app.get("/recommend/{paper_id}")
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def recommend_papers(paper_id: str, top_k: int = 6):
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try:
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recs = get_recommendations(paper_id, top_k)
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return recs
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except HTTPException:
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raise
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except Exception as e:
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raise HTTPException(status_code=500, detail=f"Recommendation error: {e}")
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@app.get("/search")
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def search_endpoint(query: str = Query(..., description="Search text query"), top_k: int = 50):
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"""
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Search for semantically similar papers using SPECTER embeddings.
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Example: /search?query=graph neural networks
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"""
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try:
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results = search_papers(query, top_k)
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return results
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except Exception as e:
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raise HTTPException(status_code=500, detail=f"Search error: {e}")
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papers_index.faiss
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version https://git-lfs.github.com/spec/v1
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oid sha256:3fb48220b52b84c794b9409e70e4df599500f6a11f8d6e68c67630cfdb125455
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size 596167725
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requirements.txt
ADDED
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@@ -0,0 +1,7 @@
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fastapi
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uvicorn
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pandas
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numpy
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faiss-cpu
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sentence-transformers
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gdown
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