Upload 7 files
Browse files- .gitattributes +1 -0
- Model_2021_CNN_Xception-V09.hdf5 +3 -0
- Procfile +3 -0
- app.py +176 -0
- requirements-ORIGINAL.txt +6 -0
- requirements.txt +6 -0
- run_app.sh +1 -0
- runtime.txt +1 -0
.gitattributes
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@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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Model_2021_CNN_Xception-V09.hdf5 filter=lfs diff=lfs merge=lfs -text
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Model_2021_CNN_Xception-V09.hdf5
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@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:95d36d811b2876ca2608cbaae73edd1a38e8f8b18e9c15a2745c1465f3f4e46e
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size 95097856
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Procfile
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web: python app.py
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app.py
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import os
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from flask import Flask, flash, request, redirect, url_for, render_template
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from werkzeug.utils import secure_filename
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import math
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# export FLASK_APP=app
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# flask run
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arquivo_modelo = 'Model_2021_CNN_Xception-V09.hdf5' #'Model_2021_CNN_VGG19-V01.hdf5' # 'model_Titan-v02.hdf5' S贸 CCN
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UPLOAD_FOLDER = '/tmp'
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ALLOWED_EXTENSIONS = {'txt', 'pdf', 'png', 'jpg', 'jpeg', 'gif'}
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def escolhe_lesao_aleatoria():
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import glob
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from random import seed
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from random import randint
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arquivos = list(glob.glob("static/tmp/*.*"))
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arquivos = [ arquivo.split('/')[2] for arquivo in arquivos]
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lesao = randint(0,len(arquivos)-1)
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print(lesao)
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return arquivos[lesao]
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def prever_doencas_de_pele(model, file):
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import numpy as np
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from PIL import Image
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import pandas as pd
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folder = 'static/tmp/'
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dict_idx_doenca = {0: ['Actinic keratoses', 'Queratose Act铆nica'],
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1: ['Basal cell carcinoma', 'Carcinoma de C茅lulas Basais' ],
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2: ['Benign keratosis-like lesions ', 'Queratoses Benignas'],
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3: ['Dermatofibroma', 'Dermatofibroma'], # (Histiocitoma Fibroso Benigno)' ],
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4: ['Melanocytic nevi', 'Nevo Melan贸cito (Sinal)'], # (Nevo Pigmentado, Sinal)
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5: [ 'Melanoma', 'Melanoma'],
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6: ['Vascular lesions', 'Les玫es de Pele Vasculares'],
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7: ['Acne', 'Acne'],
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8: ['AlopeciaAreata', 'AlopeciaAreata']}
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indices = []
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doencas_en = []
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doencas_pt = []
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for idx, doenca in (dict_idx_doenca.items()):
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indices.append(idx)
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doencas_en.append(doenca[0])
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doencas_pt.append(doenca[1])
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media_scale_image = 158.4125188825441
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std_scale_image = 47.42283803971779
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x = folder + file
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#x_pred = np.asarray(Image.open(x).resize((100,75)))
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SIZE = 299 # 224
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x_pred = np.asarray(Image.open(x).resize((SIZE,SIZE)))
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x_pred = x_pred.reshape(1, SIZE, SIZE, 3)
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x_pred = (x_pred - media_scale_image) / std_scale_image
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#classe = model.predict_classes(x_pred)[0]
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pred = np.argmax(model.predict(x_pred), axis=-1)
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probs = model.predict(x_pred)[0]
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probs = np.array(probs) * 100
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df = pd.DataFrame()
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df['probs'] = probs
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print('probs:', probs )
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df['probs'] = df['probs'].apply(lambda x : int(x))
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df['doenca_en'] = doencas_en
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df['doenca_pt'] = doencas_pt
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df['idx'] = indices
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df_ordenado = df.sort_values(by=['probs'], ascending=False).reset_index()
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df_ordenado = df_ordenado[ df_ordenado.probs > 0]
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numero_probilidades_maior_que_zero = len(df_ordenado)
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if numero_probilidades_maior_que_zero > 3:
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numero_probilidades_maior_que_zero = 3
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probs = df_ordenado['probs'][:numero_probilidades_maior_que_zero]
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doencas = df_ordenado['doenca_pt'][:numero_probilidades_maior_que_zero]
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#probs = df_ordenado['probs'][:3]
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#doencas = df_ordenado['doenca_pt'][:3]
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#print('diagn贸stico:', doenca, ' - prob:', prob)
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#print(doenca)
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#print(prob)
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return doencas, probs
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def allowed_file(filename):
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return '.' in filename and \
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filename.rsplit('.', 1)[1].lower() in ALLOWED_EXTENSIONS
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app = Flask(__name__, template_folder='templates')
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app.secret_key = "super secret key"
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app.config['UPLOAD_FOLDER'] = 'static/tmp'
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app.config['MAX_CONTENT_LENGTH'] = 16 * 1024 * 1024
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probs = []
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classesprev = []
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model = None
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app.add_url_rule('/static', view_func=app.send_static_file)
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@app.route('/', methods=['GET', 'POST'])
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def upload_file():
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#from app import model
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global model
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import numpy as np
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import tensorflow as tf
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#from keras.models import load_model
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if model is None:
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print('carregando o modelo...')
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file_model = arquivo_modelo
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from tensorflow import keras
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# model = keras.models.load_model(file_model)
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model = tf.keras.models.load_model(file_model,
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custom_objects={'Functional':tf.keras.models.Model})
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#model = tf.keras.models.load_model(file_model)
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#model = load_model(file_model)
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print('modelo carregado.')
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UPLOAD_FOLDER = '/tmp'
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ALLOWED_EXTENSIONS = {'txt', 'pdf', 'png', 'jpg', 'jpeg', 'gif'}
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if request.method == 'POST':
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print('request == POST')
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d = request.form.to_dict(flat=False)
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print(d)
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if "photo" in d.keys() and "prever_lesao" in d.keys() and d['photo'][0] != '': # request.form["prever_lesao"]:
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file = request.form['photo']
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doencas, probs = prever_doencas_de_pele(model, file)
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return render_template("index.html", file='tmp/'+file, probs=probs, classesprev=doencas)
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else:
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file = escolhe_lesao_aleatoria()
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print(file)
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doencas, probs = prever_doencas_de_pele(model, file)
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return render_template("index.html", file='tmp/'+file, probs=probs, classesprev=doencas)
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else:
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print("elsseeeeee")
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file = escolhe_lesao_aleatoria()
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doencas, probs = prever_doencas_de_pele(model, file)
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return render_template("index.html", file='tmp/'+file, probs=probs, classesprev=doencas) #, upload_file=global_file)
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@app.route('/about/')
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def about():
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return render_template('About.html')
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if __name__ == "__main__":
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app.config['SESSION_TYPE'] = 'filesystem'
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port = int(os.environ.get("PORT", 5000))
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app.debug = True
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app.run(host='0.0.0.0', port=port)
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requirements-ORIGINAL.txt
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@@ -0,0 +1,6 @@
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Flask==1.1.2
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tensorflow==2.0.0
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werkzeug==1.0.1
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pandas==1.0.3
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numpy==1.18.1
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Pillow==7.1.2
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requirements.txt
ADDED
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@@ -0,0 +1,6 @@
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Flask==2.0.2
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numpy==1.19.5
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pandas==1.3.4
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Pillow==8.4.0
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tensorflow_cpu==2.5.0
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Werkzeug==2.0.2
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run_app.sh
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flask --app app.py run
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runtime.txt
ADDED
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python-3.7.10
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