Spaces:
Running
Running
File size: 10,600 Bytes
ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 673a52e ca41776 |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 |
"""
Phase 4 UI Feature Tests
Tests all the new UI components and their API integrations
"""
import time
import json
def test_visualization_api():
"""Test the search API that powers the visualization page"""
import requests
print("=" * 60)
print("Testing Visualization API (Search)")
print("=" * 60)
try:
# Test search endpoint
response = requests.post(
"http://localhost:8000/api/search",
json={
"query": "EGFR inhibitor for lung cancer",
"top_k": 10,
"use_mmr": True
},
timeout=30
)
if response.status_code == 200:
data = response.json()
print(f"[OK] Search API works: {len(data.get('results', []))} results")
# Check result structure
if data.get('results'):
result = data['results'][0]
required_fields = ['content', 'score', 'modality']
for field in required_fields:
if field in result:
print(f" [OK] Has '{field}' field")
else:
print(f" ✗ Missing '{field}' field")
return True
else:
print(f"[FAIL] Search API failed: {response.status_code}")
print(f" Response: {response.text[:200]}")
return False
except Exception as e:
print(f"[ERROR] Search API error: {e}")
return False
def test_workflow_api():
"""Test the workflow API that powers the workflow builder"""
import requests
print("\n" + "=" * 60)
print("Testing Workflow API (Agent Pipeline)")
print("=" * 60)
try:
# Test workflow endpoint
response = requests.post(
"http://localhost:8000/api/agents/workflow",
json={
"query": "kinase inhibitor drug",
"num_candidates": 3,
"validation_checks": ["lipinski", "qed"],
"ranking_weights": {"qed": 0.5, "validity": 0.5}
},
timeout=60
)
if response.status_code == 200:
data = response.json()
print(f"[OK] Workflow API works")
print(f" Steps completed: {data.get('steps_completed', 0)}")
print(f" Total time: {data.get('total_time_ms', 0):.1f}ms")
candidates = data.get("top_candidates") or data.get("candidates", [])
print(f" Candidates: {len(candidates)}")
# Check candidate structure
if candidates:
candidate = candidates[0]
print(f"\n Sample candidate:")
print(f" - Name: {candidate.get('name', 'N/A')}")
print(f" - SMILES: {candidate.get('smiles', 'N/A')[:30]}...")
print(f" - Score: {candidate.get('score', 0):.3f}")
validation = candidate.get('validation', {})
print(f" - Valid: {validation.get('is_valid', False)}")
return True
else:
print(f"[FAIL] Workflow API failed: {response.status_code}")
print(f" Response: {response.text[:200]}")
return False
except Exception as e:
print(f"[ERROR] Workflow API error: {e}")
return False
def test_generate_api():
"""Test the generate API endpoint"""
import requests
print("\n" + "=" * 60)
print("Testing Generate API")
print("=" * 60)
try:
response = requests.post(
"http://localhost:8000/api/agents/generate",
json={
"prompt": "anti-inflammatory compound",
"mode": "text",
"num_samples": 3
},
timeout=30
)
if response.status_code == 200:
data = response.json()
molecules = data.get('molecules', [])
print(f"[OK] Generate API works: {len(molecules)} molecules")
for mol in molecules[:2]:
if isinstance(mol, dict):
print(f" - {mol.get('name', 'N/A')}: {mol.get('smiles', '')[:40]}...")
else:
print(f" - {str(mol)[:50]}...")
return True
else:
print(f"[FAIL] Generate API failed: {response.status_code}")
print(f" Response: {response.text[:200]}")
return False
except Exception as e:
print(f"[ERROR] Generate API error: {e}")
return False
def test_validate_api():
"""Test the validate API endpoint"""
import requests
print("\n" + "=" * 60)
print("Testing Validate API")
print("=" * 60)
try:
response = requests.post(
"http://localhost:8000/api/agents/validate",
json={
"smiles": [
"CC(=O)OC1=CC=CC=C1C(=O)O", # Aspirin
"CCO" # Ethanol
],
"check_lipinski": True,
"check_admet": True,
"check_alerts": True
},
timeout=30
)
if response.status_code == 200:
data = response.json()
results = data.get('validations', [])
print(f"[OK] Validate API works: {len(results)} results")
for i, result in enumerate(results):
if isinstance(result, dict):
print(f" - SMILES {i+1}: Valid={result.get('is_valid', False)}")
else:
print(f" - SMILES {i+1}: {result}")
return True
else:
print(f"[FAIL] Validate API failed: {response.status_code}")
print(f" Response: {response.text[:200]}")
return False
except Exception as e:
print(f"[ERROR] Validate API error: {e}")
return False
def test_rank_api():
"""Test the rank API endpoint"""
import requests
print("\n" + "=" * 60)
print("Testing Rank API")
print("=" * 60)
try:
response = requests.post(
"http://localhost:8000/api/agents/rank",
json={
"candidates": [
{"smiles": "CC(=O)OC1=CC=CC=C1C(=O)O", "name": "Aspirin", "score": 0.8},
{"smiles": "CC(=O)NC1=CC=C(C=C1)O", "name": "Acetaminophen", "score": 0.7}
],
"weights": {"qed": 0.5, "validity": 0.5},
"top_k": 5
},
timeout=30
)
if response.status_code == 200:
data = response.json()
ranked = data.get('ranked', [])
print(f"[OK] Rank API works: {len(ranked)} ranked")
for item in ranked:
print(f" - {item.get('name', 'N/A')}: Score={item.get('score', 0):.3f}")
return True
else:
print(f"[FAIL] Rank API failed: {response.status_code}")
return False
except Exception as e:
print(f"[ERROR] Rank API error: {e}")
return False
def test_export_functions():
"""Test export functionality by simulating what the UI does"""
print("\n" + "=" * 60)
print("Testing Export Functions (Simulation)")
print("=" * 60)
# Simulate the data that would be exported
sample_results = [
{
"id": "1",
"content": "EGFR inhibitor compound",
"score": 0.95,
"modality": "text",
"source": "pubmed",
"citation": "Nature 2024"
},
{
"id": "2",
"content": "MTAAPRGPRL", # Protein sequence
"score": 0.88,
"modality": "protein",
"source": "uniprot",
"citation": "UniProt P12345"
}
]
# Test CSV export logic
try:
headers = ["id", "content", "score", "modality", "source", "citation"]
rows = []
for r in sample_results:
rows.append([
r['id'],
f'"{r["content"].replace(chr(34), chr(34)+chr(34))}"',
str(r['score']),
r['modality'],
r['source'],
r.get('citation', '')
])
csv_content = ",".join(headers) + "\n" + "\n".join([",".join(row) for row in rows])
print(f"[OK] CSV export works: {len(csv_content)} chars")
except Exception as e:
print(f"[ERROR] CSV export error: {e}")
# Test JSON export logic
try:
json_content = json.dumps(sample_results, indent=2)
print(f"[OK] JSON export works: {len(json_content)} chars")
except Exception as e:
print(f"[ERROR] JSON export error: {e}")
# Test FASTA export logic
try:
fasta_lines = []
for r in sample_results:
if r['modality'] == 'protein':
fasta_lines.append(f">{r['id']}\n{r['content']}")
fasta_content = "\n\n".join(fasta_lines)
if fasta_content:
print(f"[OK] FASTA export works: {len(fasta_content)} chars")
else:
print(f"ℹ️ FASTA export: No protein sequences to export")
except Exception as e:
print(f"[ERROR] FASTA export error: {e}")
return True
def run_all_tests():
"""Run all Phase 4 tests"""
print("\n" + "=" * 60)
print("[TEST] PHASE 4 UI FEATURE TESTS")
print("=" * 60)
results = []
# Run all tests
results.append(("Visualization API", test_visualization_api()))
results.append(("Generate API", test_generate_api()))
results.append(("Validate API", test_validate_api()))
results.append(("Rank API", test_rank_api()))
results.append(("Workflow API", test_workflow_api()))
results.append(("Export Functions", test_export_functions()))
# Summary
print("\n" + "=" * 60)
print("TEST SUMMARY")
print("=" * 60)
passed = sum(1 for _, result in results if result)
total = len(results)
for name, result in results:
status = "[PASS]" if result else "[FAIL]"
print(f" {status}: {name}")
print(f"\n Total: {passed}/{total} tests passed")
if passed == total:
print("\n All Phase 4 features working correctly!")
else:
print(f"\n [WARN] {total - passed} test(s) failed")
return passed == total
if __name__ == "__main__":
run_all_tests()
|