configs/workflow/directed_evolution.yaml

tools:
  - name: protein_uniprot_request        # 0
    inputs:
      accession: P42212
  - name: protein_question_answering     # 1
    inputs:
      text: What are the predicted domains or motifs present in this protein sequence?
  - name: protein_question_answering     # 2
    inputs:
      text: Does the protein sequence suggest any specific biological role or activity?
  - name: mutation_engineering           # 3
    inputs:
      text: Leads to enhanced fluorescence at 37 degrees Celsius.
  - name: apply_mutation_to_sequence     # 4
  - name: mutation_engineering           # 5
    inputs:
      text: Leads to enhanced fluorescence at 37 degrees Celsius.
  - name: apply_mutation_to_sequence     # 6
  - name: mutation_engineering           # 7
    inputs:
      text: Leads to enhanced fluorescence at 37 degrees Celsius.
  - name: apply_mutation_to_sequence     # 8
  - name: protein_folding                # 9
  - name: visualize_protein              # 10
edges:
  - start: 0
    end: 1
  - start: 0
    end: 2
  - start: 0
    end: 3
  - start: 0
    end: 4
  - start: 3
    end: 4
    name_mapping:
      output: mutation
  - start: 4
    end: 5
  - start: 4
    end: 6
  - start: 5
    end: 6
    name_mapping:
      output: mutation
  - start: 6
    end: 7
  - start: 6
    end: 8
  - start: 7
    end: 8
    name_mapping:
      output: mutation
  - start: 8
    end: 9
  - start: 9
    end: 10