Fix API response handling: extract molecules/proteins arrays from wrapped response

Fix Next.js 16 build: disable cacheComponents, add force-dynamic to all API routes and pages with server fetches

Fix all TypeScript errors: remove unused imports, delete orphan reactflow components

Fix Next.js 15 breaking change: await params in API routes

fix: PR review fixes - dockerfile, encoders, orchestrator, paths

Merge Rami into main-merge-rami (manual conflict resolution)

Fix explorer/ingestion UI and 3D endpoints

feat: enhance visualization with mock data fallback and update readme

fix: remove /dashboard prefix, fix theme toggle position, fix 3D viewer, remove langflow

feat: merge Rami's bioflow architecture with core-progress fixes

feat: Complete Phase 4 UI/UX Polish with 3D visualization and workflow builder

fix: resolve 3Dmol viewer background color crash

fix: restructure dashboard pages and fix 404 errors

fix: move theme toggle to status section and reduce visualization spacing

feat: add complete visualization system from feat/raed-ui

Phase 1: FastAPI integration with DeepPurpose DTI predictor

fix: Replace batch runner with Python script and ensure Lucide icons usage

chore: restructure app into dashboard architecture; move routes, add dashboard layout, theme toggle, providers, and error handling

feat: add molecular and protein visualization dashboard

feat: Complete BioFlow Orchestrator hackathon implementation

improve sidebar (cherry-picked from feat/raed-ui)

feat: Complete Qdrant pipeline with real PCA + cleanup

improve sidebar

chore: integrate UI snapshot from raed-ui branch

Improve sidebar

refactor

Improve UI and unify api, types and schemas

add loading and metadata to layout

Dashboard

ui init