Dockerfile

FROM rocker/shiny-verse:4.3.1
RUN apt-get update && apt-get install -y libbz2-dev

# Workaround for renv cache
RUN mkdir /.cache
RUN chmod 777 /.cache

WORKDIR /code



RUN install2.r --error \
    BiocManager 
CMD ["R", "--quiet", "-e", "BiocManager::install("cBioPortalData")"]

RUN install2.r --error \
    shiny \
    DT \
    rhino \
    data.table \
    gargoyle \
    thematic \
    shinyWidgets \
    stats \
    plotly \
    shinyjs 

# Install development packages from GitHub
RUN installGithub.r \
    rstudio/bslib \
    rstudio/httpuv \
    RinteRface/bs4Dash \
    vojtam/g3viz
 
COPY . .

# Copy application code
COPY . .

# Install dependencies
#RUN Rscript -e 'options(renv.config.cache.enabled = FALSE); renv::restore(prompt = FALSE)'

CMD ["R", "--quiet", "-e", "shiny::runApp(host='0.0.0.0', port=7860)"]