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404c45f 2e410e4 404c45f 2e410e4 404c45f 2e410e4 404c45f | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 | """
OpenEnv-native environment adapter for Clinical Trial Triage.
This module exposes a Meta OpenEnv Environment implementation while reusing
existing domain logic from server.environment. It enables native OpenEnv
HTTP/WebSocket operation via openenv.core.env_server.create_fastapi_app.
"""
from __future__ import annotations
import random
from typing import Any, Dict, Optional
from pydantic import Field, model_validator
from openenv.core.env_server import (
Action,
Environment,
Observation,
State,
)
from openenv.core.env_server.types import EnvironmentMetadata
from models import (
AdverseEventTriageAction,
ProtocolDeviationAction,
SafetyNarrativeAction,
TaskID,
TriageAction,
)
from server.environment import ClinicalTrialEnvironment
_SCORE_EPS = 1e-3
def _clamp_open_score(value: float) -> float:
return max(_SCORE_EPS, min(1.0 - _SCORE_EPS, float(value)))
class OpenEnvTriageAction(Action):
"""OpenEnv action wrapper for the clinical triage tasks."""
task_id: TaskID = Field(..., description="Task to execute action against")
ae_triage: Optional[AdverseEventTriageAction] = None
deviation_audit: Optional[ProtocolDeviationAction] = None
safety_narrative: Optional[SafetyNarrativeAction] = None
@model_validator(mode="after")
def validate_task_payload(self) -> "OpenEnvTriageAction":
has_ae = self.ae_triage is not None
has_dev = self.deviation_audit is not None
has_nr = self.safety_narrative is not None
if sum([has_ae, has_dev, has_nr]) != 1:
raise ValueError(
"Exactly one payload must be provided: ae_triage, deviation_audit, or safety_narrative"
)
if self.task_id == TaskID.ADVERSE_EVENT_TRIAGE and not has_ae:
raise ValueError("task_id=adverse_event_triage requires ae_triage payload")
if self.task_id == TaskID.PROTOCOL_DEVIATION_AUDIT and not has_dev:
raise ValueError("task_id=protocol_deviation_audit requires deviation_audit payload")
if self.task_id == TaskID.SAFETY_NARRATIVE_GENERATION and not has_nr:
raise ValueError("task_id=safety_narrative_generation requires safety_narrative payload")
return self
class OpenEnvTriageObservation(Observation):
"""OpenEnv observation wrapper with full domain payload."""
task_id: TaskID
payload: Dict[str, Any] = Field(default_factory=dict)
message: str = ""
class OpenEnvTriageState(State):
"""OpenEnv state object for environment introspection."""
task_id: Optional[TaskID] = None
max_steps: int = 0
done: bool = False
cumulative_reward: float = 0.0
current_case_id: Optional[str] = None
class ClinicalTrialOpenEnv(
Environment[OpenEnvTriageAction, OpenEnvTriageObservation, OpenEnvTriageState]
):
"""
Native OpenEnv environment implementation for clinical trial triage.
Supports:
- task-specific episodes via reset(task_id=...)
- mixed-task curriculum via reset(task_id="mixed")
- complete reward + done semantics in OpenEnv Observation
"""
SUPPORTS_CONCURRENT_SESSIONS = False
def __init__(self) -> None:
super().__init__()
self._core = ClinicalTrialEnvironment()
self._task_rng = random.Random(42)
self._last_task_id: Optional[TaskID] = None
def _to_openenv_observation(
self,
payload: Dict[str, Any],
task_id: TaskID,
reward: Optional[float],
done: bool,
message: str,
reward_detail: Optional[Dict[str, Any]] = None,
) -> OpenEnvTriageObservation:
metadata = {}
if reward_detail is not None:
metadata["reward_detail"] = reward_detail
return OpenEnvTriageObservation(
task_id=task_id,
payload=payload,
message=message,
reward=reward,
done=done,
metadata=metadata,
)
def reset(
self,
seed: Optional[int] = None,
episode_id: Optional[str] = None,
**kwargs: Any,
) -> OpenEnvTriageObservation:
if seed is not None:
self._task_rng.seed(seed)
requested_task = kwargs.get("task_id", TaskID.ADVERSE_EVENT_TRIAGE)
if requested_task == "mixed":
chosen_task = self._task_rng.choice(
[
TaskID.ADVERSE_EVENT_TRIAGE,
TaskID.PROTOCOL_DEVIATION_AUDIT,
TaskID.SAFETY_NARRATIVE_GENERATION,
]
)
else:
chosen_task = TaskID(requested_task)
self._last_task_id = chosen_task
obs = self._core.reset(task_id=chosen_task)
payload = obs.model_dump()
return self._to_openenv_observation(
payload=payload,
task_id=chosen_task,
reward=None,
done=False,
message=obs.message,
)
def step(
self,
action: OpenEnvTriageAction,
timeout_s: Optional[float] = None,
**kwargs: Any,
) -> OpenEnvTriageObservation:
triage_action = TriageAction(
task_id=action.task_id,
ae_triage=action.ae_triage,
deviation_audit=action.deviation_audit,
safety_narrative=action.safety_narrative,
)
step_result = self._core.step(triage_action)
obs = step_result.observation
payload = obs.model_dump()
return self._to_openenv_observation(
payload=payload,
task_id=TaskID(obs.task_id),
reward=step_result.reward,
done=step_result.done,
message=obs.message,
reward_detail=step_result.reward_detail.model_dump(),
)
@property
def state(self) -> OpenEnvTriageState:
state = self._core.state()
normalized_cumulative = _clamp_open_score(
state.cumulative_reward / state.step_count if state.step_count > 0 else _SCORE_EPS
)
return OpenEnvTriageState(
episode_id=state.episode_id,
step_count=state.step_count,
task_id=TaskID(state.task_id),
max_steps=state.max_steps,
done=state.done,
cumulative_reward=normalized_cumulative,
current_case_id=state.current_case_id,
)
def get_metadata(self) -> EnvironmentMetadata:
return EnvironmentMetadata(
name="Clinical Trial Triage OpenEnv",
description=(
"Production-grade multi-task environment for adverse event triage, "
"protocol deviation auditing, and safety narrative generation."
),
version="2.0.0",
author="OpenEnv Hackathon Submission",
documentation_url="/docs",
)
def close(self) -> None:
# Core env has no external handles to close today.
return
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