app/data_indexing.py

import os
import uuid
from pathlib import Path
from pinecone.grpc import PineconeGRPC as Pinecone
from pinecone import ServerlessSpec
from langchain_community.vectorstores import Chroma
from langchain_openai import OpenAIEmbeddings

current_dir = Path(__file__).resolve().parent


os.environ['PINECONE_API_KEY'] = "pcsk_58McSb_4t7jpWwPSpCAHoi41Hgmj9v4xzPAuVq8753vEN2Ec4pShXvcUAv8KcapeLpumTu"
os.environ['OPENAI_API_KEY'] = ' bkFJE3ZqJD3V1MVR_d_EpoM5n-rK5_k6F6f0Hg4letVnAA'


class DataIndexer:

    source_file =  os.path.join(current_dir, 'sources.txt')

    def __init__(self, index_name='langchain-repo') -> None:
        # self.embedding_client = InferenceClient(
        #     "dunzhang/stella_en_1.5B_v5",
        # )
        self.embedding_client = OpenAIEmbeddings()

        self.index_name = index_name
        self.pinecone_client = Pinecone(api_key=os.environ.get('PINECONE_API_KEY'))

        if index_name not in self.pinecone_client.list_indexes().names():
            self.pinecone_client.create_index(
                name=index_name,
                dimension=1536,
                metric='cosine',
                spec=ServerlessSpec(
                    cloud='aws', 
                    region='us-east-1'
                ) 
            ) 

        self.index = self.pinecone_client.Index(self.index_name)
        # self.source_index = self.get_source_index()
        self.source_index = None

    def get_source_index(self):
        if not os.path.isfile(self.source_file):
            print('No source file')
            return None
        
        print('create source index')
        
        with open(self.source_file, 'r') as file:
            sources = file.readlines()
            
        sources = [s.rstrip('\n') for s in sources]
        vectorstore = Chroma.from_texts(
            sources, embedding=self.embedding_client
        )
        return vectorstore

    def index_data(self, docs, batch_size=32):
        for i in range(0, len(docs), batch_size):
            batch = docs[i: i + batch_size]
            values = self.embedding_client.embed_documents([
                doc.page_content for doc in batch
            ])

            vector_ids = [str(uuid.uuid4()) for _ in batch]
            metadatas = [{
                'text': doc.page_content,
                **doc.metadata
            } for doc in batch]

            vectors = [{
                'id': vector_id,
                'values': value,
                'metadata': metadata
            } for vector_id, value, metadata in zip(vector_ids, values, metadatas
            )]

            try: 
                upsert_response = self.index.upsert(vectors=vectors)
                print(upsert_response)
            except Exception as e:
                print(e)

    def search(self,text_query, top_k=5):
        vector = self.embedding_client.embed_query(text_query)
        result = self.index.query(
            vector=vector,
            top_k=top_k,
            include_metadata=True,
        )

        docs = []
        for res in result["matches"]:
            metadata = res["metadata"]
            text = metadata.pop('text')
            docs.append(text)
        return docs
    

if __name__ == '__main__':

    from langchain_community.document_loaders import GitLoader
    from langchain_text_splitters import (
        Language,
        RecursiveCharacterTextSplitter,
    )

    loader = GitLoader(
        clone_url="https://github.com/langchain-ai/langchain",
        repo_path="./code_data/langchain_repo/",
        branch="master",
    )

    python_splitter = RecursiveCharacterTextSplitter.from_language(
        language=Language.PYTHON, chunk_size=10000, chunk_overlap=100
    )

    docs = loader.load()
    docs = [doc for doc in docs if doc.metadata['file_type'] in ['.py', '.md']]
    docs = [doc for doc in docs if len(doc.page_content) < 50000]
    docs = python_splitter.split_documents(docs)
    for doc in docs:
        doc.page_content = '# {}\n\n'.format(doc.metadata['source']) + doc.page_content

    indexer = DataIndexer()
    with open('/app/sources.txt', 'a') as file:
        for doc in docs:
            file.writelines(doc.metadata['source'] + '\n')
    print('DONE')
    indexer.index_data(docs)