Spaces:
Paused
Paused
Update app.py
Browse files
app.py
CHANGED
|
@@ -255,7 +255,7 @@ def predict_peptide_from_file(base_model_path, finetuned_model_path, file_obj, m
|
|
| 255 |
for i, row in input.iterrows():
|
| 256 |
protein_seq = row['Receptor Sequence']
|
| 257 |
peptide_seq = row['Binder']
|
| 258 |
-
peptide_length = min([len(peptide_seq) max_peptide_length]) # use the same length of ground truth peptide length for prediction limited to max_peptide_length
|
| 259 |
|
| 260 |
#get metrics for ground truth peptide
|
| 261 |
ppl_value = compute_pseudo_perplexity(loaded_model, tokenizer, protein_seq, peptide_seq)
|
|
|
|
| 255 |
for i, row in input.iterrows():
|
| 256 |
protein_seq = row['Receptor Sequence']
|
| 257 |
peptide_seq = row['Binder']
|
| 258 |
+
peptide_length = min([len(peptide_seq), max_peptide_length]) # use the same length of ground truth peptide length for prediction limited to max_peptide_length
|
| 259 |
|
| 260 |
#get metrics for ground truth peptide
|
| 261 |
ppl_value = compute_pseudo_perplexity(loaded_model, tokenizer, protein_seq, peptide_seq)
|