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Create app.py
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app.py
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from transformers import pipeline
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import streamlit as st
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col_left, col_middle, col_right= st.columns(3)
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col_middle.title("MedBotDash")
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st.divider()
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@st.cache_resource()
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def load_model():
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model = pipeline("token-classification",
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model="Clinical-AI-Apollo/Medical-NER",
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aggregation_strategy='simple')
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return model
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pipe = load_model()
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st.subheader("Enter Detailed Description of your condition")
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condition = st.text_input("enter the condition")
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data = pipe(condition)
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#st.write(data)
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severity = []
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sign_symptom = []
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biological_structure = []
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age = []
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sex = []
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lab_value = []
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# Iterate through the data and append words to their respective lists based on entity_group
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for entity in data:
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if entity['entity_group'] == 'SEVERITY':
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severity.append(entity['word'])
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elif entity['entity_group'] == 'SIGN_SYMPTOM':
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sign_symptom.append(entity['word'])
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elif entity['entity_group'] == 'BIOLOGICAL_STRUCTURE':
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biological_structure.append(entity['word'])
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elif entity['entity_group'] == 'AGE':
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age.append(entity['word'])
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elif entity['entity_group'] == 'SEX':
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sex.append(entity['word'])
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elif entity['entity_group'] == 'LAB_VALUE':
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lab_value.append(entity['word'])
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col1, col2= st.columns(2)
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col1.metric("Age", age[0] if age else 'NA')
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col2.metric("Sex", sex[0] if sex else 'NA')
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st.divider()
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sign_symptom = set(sign_symptom)
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severity = set(severity)
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biological_structure = set(biological_structure)
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age = set(age)
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sex = set(age)
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lab_value = set(lab_value)
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tab1, tab2, tab3 = st.tabs(["Signs", "Biological Structure", "Severity"])
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#st.subheader("Signs")
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with tab1:
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for sign in sign_symptom:
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st.text(sign)
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#st.subheader("Severity")
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with tab2:
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for bio in biological_structure:
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st.text(bio)
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with tab3:
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for severity in severity:
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st.text(severity)
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#st.subheader("Biological Structure")
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