# --- # jupyter: # jupytext: # text_representation: # extension: .py # format_name: percent # format_version: '1.3' # jupytext_version: 1.16.1 # kernelspec: # display_name: Python 3 (ipykernel) # language: python # name: python3 # --- # %% import os import numpy as np import librosa import librosa.display import matplotlib.pyplot as plt from sklearn.cluster import KMeans from sklearn.decomposition import PCA from IPython.display import Audio, display # %% # Load the entire audio file cwd = os.getcwd() relative_path = "data/soundscape_data/PER_001_S01_20190116_100007Z.flac" file_path = os.path.join(cwd, relative_path) y, sr = librosa.load(file_path, sr=44100) # %% # split soundfile in to 10s chunks window_size = 10 # window size in seconds hop_size = 10 # hop size in seconds # Convert window and hop size to samples window_samples = int(window_size * sr) hop_samples = int(hop_size * sr) # Total number of windows num_windows = (len(y) - window_samples) // hop_samples + 1 print(f"Total number of windows: {num_windows}") # %% # Define frequency bands (in Hz) bands = { "Sub-bass": (20, 60), "Bass": (60, 250), "Low Midrange": (250, 500), "Midrange": (500, 2000), "Upper Midrange": (2000, 4000), "Presence": (4000, 6000), "Brilliance": (6000, 20000), } # Initialize a list to hold the features all_features = [] for i in range(num_windows): start_sample = i * hop_samples end_sample = start_sample + window_samples y_window = y[start_sample:end_sample] # Compute STFT S = librosa.stft(y_window) S_db = librosa.amplitude_to_db(np.abs(S)) # Compute features for each band features = [] for band, (low_freq, high_freq) in bands.items(): low_bin = int(np.floor(low_freq * (S.shape[0] / sr))) high_bin = int(np.ceil(high_freq * (S.shape[0] / sr))) band_energy = np.mean(S_db[low_bin:high_bin, :], axis=0) features.append(band_energy) # Flatten the feature array and add to all_features features_flat = np.concatenate(features) all_features.append(features_flat) # Convert to numpy array all_features = np.array(all_features) # %% # Reduce dimensionality with PCA pca = PCA(n_components=2) features_reduced = pca.fit_transform(all_features) # Perform k-means clustering kmeans = KMeans(n_clusters=5) # Example: 5 clusters clusters = kmeans.fit_predict(features_reduced) # Plot the clusters plt.figure(figsize=(10, 6)) scatter = plt.scatter( features_reduced[:, 0], features_reduced[:, 1], c=clusters, cmap="viridis" ) plt.title("Clustered Frequency Band Features") plt.xlabel("Principal Component 1") plt.ylabel("Principal Component 2") plt.colorbar(scatter, label="Cluster") plt.show() # %% # Play the audio for a representative sample from each cluster for cluster_label in np.unique(clusters): # Find the first data point in the cluster representative_index = np.where(clusters == cluster_label)[0][0] # Use the original audio window at the representative index start_sample = representative_index * hop_samples end_sample = start_sample + window_samples y_representative = y[start_sample:end_sample] print(f"Cluster {cluster_label} representative audio:") display(Audio(data=y_representative, rate=sr)) # %% [markdown] # ## pipeline for all the files # %% import os import numpy as np import librosa from sklearn.preprocessing import StandardScaler import joblib import numpy as np from sklearn.cluster import KMeans from sklearn.decomposition import PCA import matplotlib.pyplot as plt import librosa from IPython.display import Audio, display from sklearn.model_selection import cross_val_score from sklearn.ensemble import RandomForestClassifier # %% # Directory containing the audio files # audio_dir = "data/soundscape_data" audio_dir = ( "data/SoundMeters_Ingles_Primary-20240519T132658Z-002/SoundMeters_Ingles_Primary" ) # Parameters for windowing window_size = 10 # window size in seconds hop_size = 10 # hop size in seconds # Define frequency bands (in Hz) bands = { "Sub-bass": (20, 60), "Bass": (60, 250), "Low Midrange": (250, 500), "Midrange": (500, 2000), "Upper Midrange": (2000, 4000), "Presence": (4000, 6000), "Brilliance": (6000, 20000), } # Directory to save features features_dir = "features" os.makedirs(features_dir, exist_ok=True) # Iterate over each audio file in the directory for filename in os.listdir(audio_dir): if filename.endswith(".wav"): file_path = os.path.join(audio_dir, filename) y, sr = librosa.load(file_path, sr=44100) # Convert window and hop size to samples window_samples = int(window_size * sr) hop_samples = int(hop_size * sr) # Total number of windows in the current file num_windows = (len(y) - window_samples) // hop_samples + 1 all_features = [] for i in range(num_windows): start_sample = i * hop_samples end_sample = start_sample + window_samples y_window = y[start_sample:end_sample] # Compute STFT S = librosa.stft(y_window) S_db = librosa.amplitude_to_db(np.abs(S)) # Compute features for each band features = [] for band, (low_freq, high_freq) in bands.items(): low_bin = int(np.floor(low_freq * (S.shape[0] / sr))) high_bin = int(np.ceil(high_freq * (S.shape[0] / sr))) band_energy = np.mean(S_db[low_bin:high_bin, :], axis=0) features.append(band_energy) # Flatten the feature array and add to all_features features_flat = np.concatenate(features) all_features.append(features_flat) # Convert to numpy array all_features = np.array(all_features) # Standardize features scaler = StandardScaler() all_features = scaler.fit_transform(all_features) # Save features to disk feature_file = os.path.join( features_dir, f"{os.path.splitext(filename)[0]}_features.npy" ) joblib.dump((all_features, scaler), feature_file) # %% # Directory to load features features_dir = "features" n_clusters = 5 # Load all features all_features = [] for feature_file in os.listdir(features_dir): if feature_file.endswith("_features.npy"): features, _ = joblib.load(os.path.join(features_dir, feature_file)) all_features.append(features) # Combine all features into a single array all_features = np.vstack(all_features) # Perform PCA for 2D visualization pca = PCA(n_components=2) features_pca = pca.fit_transform(all_features) # Perform k-means clustering kmeans = KMeans(n_clusters=n_clusters) # Example: 5 clusters clusters = kmeans.fit_predict(all_features) # Plot the PCA-reduced features with cluster labels plt.figure(figsize=(10, 6)) scatter = plt.scatter( features_pca[:, 0], features_pca[:, 1], c=clusters, cmap="viridis" ) plt.title("PCA of Clustered Frequency Band Features") plt.xlabel("Principal Component 1") plt.ylabel("Principal Component 2") plt.colorbar(scatter, label="Cluster") plt.show() # Save clustering results clustering_results = {"clusters": clusters, "kmeans": kmeans, "pca": pca} joblib.dump(clustering_results, "clustering_results.pkl") # Plot the clusters plt.figure(figsize=(10, 6)) for i in range(n_clusters): plt.plot(all_features[clusters == i].mean(axis=0), label=f"Cluster {i}") plt.legend() plt.title("Clustered Frequency Band Features") plt.xlabel("Feature Index (Frequency Bands)") plt.ylabel("Mean Feature Value (Energy in dB)") plt.show() # %% # Directory containing the audio files # audio_dir = "data/soundscape_data" audio_dir = ( "data/SoundMeters_Ingles_Primary-20240519T132658Z-002/SoundMeters_Ingles_Primary" ) # Directory to load features features_dir = "features" # Parameters for windowing window_size = 10 # window size in seconds hop_size = 10 # hop size in seconds # Load clustering results clustering_results = joblib.load("clustering_results.pkl") clusters = clustering_results["clusters"] # Load all features all_features = [] audio_segments = [] for feature_file in os.listdir(features_dir): if feature_file.endswith("_features.npy"): features, scaler = joblib.load(os.path.join(features_dir, feature_file)) filename = feature_file.replace("_features.npy", ".wav") file_path = os.path.join(audio_dir, filename) y, sr = librosa.load(file_path, sr=44100) # Convert window and hop size to samples window_samples = int(window_size * sr) hop_samples = int(hop_size * sr) num_windows = (len(y) - window_samples) // hop_samples + 1 for i in range(num_windows): start_sample = i * hop_samples end_sample = start_sample + window_samples y_window = y[start_sample:end_sample] audio_segments.append(y_window) all_features.append(features) # Flatten the list of all features all_features = np.vstack(all_features) # Play the audio for a representative sample from each cluster for cluster_label in np.unique(clusters): try: # Find the first data point in the cluster representative_index = np.where(clusters == cluster_label)[0][0] # Use the original audio segment at the representative index y_representative = audio_segments[representative_index] # Check if y_representative is not empty if y_representative.size == 0: raise ValueError("The audio segment is empty") print(f"Cluster {cluster_label} representative audio:") display(Audio(data=y_representative, rate=sr)) except Exception as e: print(f"Could not play audio for cluster {cluster_label}: {e}") # %% # Fit PCA pca = PCA().fit(all_features_scaled) # Method 1: Variance Explained explained_variance = pca.explained_variance_ratio_ cumulative_explained_variance = np.cumsum(explained_variance) # Plot the cumulative explained variance plt.figure(figsize=(10, 6)) plt.plot(cumulative_explained_variance, marker="o") plt.xlabel("Number of Principal Components") plt.ylabel("Cumulative Explained Variance") plt.title("Explained Variance vs. Number of Principal Components") plt.grid(True) plt.show() # %% # Method 2: Scree Plot plt.figure(figsize=(10, 6)) plt.plot(np.arange(1, len(explained_variance) + 1), explained_variance, marker="o") plt.xlabel("Principal Component") plt.ylabel("Explained Variance") plt.title("Scree Plot") plt.grid(True) plt.show() # %% # Method 3: Kaiser Criterion eigenvalues = pca.explained_variance_ kaiser_criterion = np.sum(eigenvalues > 1) # IMO this doesnt make sense at the moment, we need to extract more features print(f"Number of components selected by Kaiser Criterion: {kaiser_criterion}") # %% # Method 4: Cross-Validation # Evaluate a classifier with different numbers of principal components ## do not run if you dont have time, this takes forever. # scores = [] # for n_components in range(1, len(explained_variance) + 1): # pca = PCA(n_components=n_components) # features_pca = pca.fit_transform(all_features_scaled) # classifier = RandomForestClassifier() # Use your preferred model here # score = np.mean(cross_val_score(classifier, features_pca, clusters, cv=n_clusters)) # Assuming `clusters` are your labels # scores.append(score) # # Plot cross-validation scores # plt.figure(figsize=(10, 6)) # plt.plot(range(1, len(explained_variance) + 1), scores, marker='o') # plt.xlabel('Number of Principal Components') # plt.ylabel('Cross-Validation Score') # plt.title('Cross-Validation Score vs. Number of Principal Components') # plt.grid(True) # plt.show() # # Choosing the number of components that explain at least 95% of the variance # n_components_variance = np.argmax(cumulative_explained_variance >= 0.95) + 1 # print(f"Number of components to retain 95% variance: {n_components_variance}") # # Choose the optimal number of components based on your analysis # optimal_n_components = n_components_variance # or based on the scree plot, cross-validation, etc. # print(f"Optimal number of components: {optimal_n_components}") # # Perform PCA with the selected number of components # pca = PCA(n_components=optimal_n_components) # features_pca = pca.fit_transform(all_features_scaled) # %% # %%