Commit ·
d4ef6cc
1
Parent(s): f60bdbe
update: Add de logs
Browse files- app.py +9 -0
- src/models/inference.py +97 -16
app.py
CHANGED
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@@ -1,14 +1,23 @@
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import sys
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import os
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ROOT = os.path.dirname(__file__)
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SRC = os.path.join(ROOT, "src")
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if SRC not in sys.path:
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sys.path.insert(0, SRC)
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from main import demo
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if __name__ == "__main__":
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demo.launch(
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server_name="0.0.0.0",
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server_port=int(os.environ.get("PORT", 7860)),
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import sys
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import os
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import logging
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logging.info("[app.py] starting...")
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ROOT = os.path.dirname(__file__)
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SRC = os.path.join(ROOT, "src")
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logging.info(f"[app.py] ROOT={ROOT}")
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logging.info(f"[app.py] SRC={SRC}")
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if SRC not in sys.path:
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sys.path.insert(0, SRC)
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logging.info("[app.py] importing main...")
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from main import demo
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logging.info("[app.py] imported main successfully")
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if __name__ == "__main__":
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logging.info("[app.py] launching gradio...")
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demo.launch(
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server_name="0.0.0.0",
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server_port=int(os.environ.get("PORT", 7860)),
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src/models/inference.py
CHANGED
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@@ -1,16 +1,21 @@
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-
import torch
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import numpy as np
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import matplotlib.pyplot as plt
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import os
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from glob import glob
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from models.preprocessing import process_image_pil, process_metadata_pad20
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from models.model_loader import load_model, find_last_conv
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from models.cam import GradCAMPlusPlus
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DEVICE = torch.device("cuda" if torch.cuda.is_available() else "cpu")
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PROJECT_ROOT = os.path.abspath(os.path.join(os.path.dirname(__file__), "..", ".."))
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-
CLASS_LIST = ["NEV","BCC","ACK","SEK","SCC","MEL"]
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ENCODER_DIR = os.path.join(PROJECT_ROOT, "data", "preprocess_data")
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MODEL_ROOT_PATTERNS = [
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@@ -35,6 +40,7 @@ MODEL_ROOT_PATTERNS = [
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"model_*_with_one-hot-encoder_512_with_best_architecture",
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),
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]
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PREFERRED_FOLD = 3
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IMPLEMENTED_ATTENTION_MECHANISMS = {
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"no-metadata",
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@@ -56,9 +62,31 @@ MODEL_CONFIGS = {}
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MODEL_LABELS = {}
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MODEL_CACHE = {}
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DEFAULT_MODEL_KEY = None
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-
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prefix = "model_"
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suffix = "_with_one-hot-encoder_512_with_best_architecture"
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if not model_dir_name.startswith(prefix) or not model_dir_name.endswith(suffix):
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@@ -66,7 +94,7 @@ def _parse_cnn_model_name(model_dir_name):
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return model_dir_name[len(prefix):-len(suffix)]
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-
def _find_fold_dir(model_root, cnn_model_name):
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fold_dirs = sorted(glob(os.path.join(model_root, f"{cnn_model_name}_fold_*")))
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if not fold_dirs:
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return None
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@@ -82,12 +110,12 @@ def _find_fold_dir(model_root, cnn_model_name):
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return None
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-
def _extract_fold_number(fold_dir):
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name = os.path.basename(fold_dir)
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return name.split("_fold_")[-1] if "_fold_" in name else "?"
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def _extract_path_metadata(model_root):
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parts = os.path.normpath(model_root).split(os.sep)
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mechanism = os.path.basename(os.path.dirname(model_root))
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unfreeze_weights = "unfrozen_weights"
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@@ -105,25 +133,45 @@ def _extract_path_metadata(model_root):
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return mechanism, unfreeze_weights, num_heads
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def _discover_models():
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global DEFAULT_MODEL_KEY
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model_roots = sorted({
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path
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for pattern in MODEL_ROOT_PATTERNS
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for path in glob(pattern)
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})
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for model_root in model_roots:
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mechanism, unfreeze_weights, num_heads = _extract_path_metadata(model_root)
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model_dir_name = os.path.basename(model_root)
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cnn_model_name = _parse_cnn_model_name(model_dir_name)
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if cnn_model_name is None:
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continue
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fold_dir = _find_fold_dir(model_root, cnn_model_name)
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if fold_dir is None:
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continue
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model_path = os.path.join(fold_dir, "model.pth")
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fold_number = _extract_fold_number(fold_dir)
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model_key = f"{mechanism}|{cnn_model_name}|{unfreeze_weights}|{num_heads}|{fold_number}"
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supported = mechanism in IMPLEMENTED_ATTENTION_MECHANISMS
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@@ -140,6 +188,7 @@ def _discover_models():
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"label": label,
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}
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MODEL_LABELS[model_key] = label
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preferred_defaults = [
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key for key, cfg in MODEL_CONFIGS.items()
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@@ -154,27 +203,49 @@ def _discover_models():
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elif MODEL_CONFIGS:
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DEFAULT_MODEL_KEY = sorted(MODEL_CONFIGS.keys())[0]
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-
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def get_available_model_choices():
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return [(MODEL_LABELS[key], key) for key in sorted(MODEL_LABELS.keys())]
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def get_default_model_key():
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return DEFAULT_MODEL_KEY
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def get_model_label(model_key):
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return MODEL_LABELS.get(model_key, "Unknown model")
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def _get_model_and_cam(model_key):
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if not MODEL_CONFIGS:
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raise RuntimeError(
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f"No compatible model checkpoints were found in
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-
"
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)
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if model_key is None:
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@@ -195,7 +266,8 @@ def _get_model_and_cam(model_key):
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if model_key not in MODEL_CACHE:
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model_path = cfg["model_path"]
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print(f"
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model = load_model(
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device=DEVICE,
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model_path=model_path,
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@@ -204,9 +276,13 @@ def _get_model_and_cam(model_key):
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num_heads=cfg["num_heads"],
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unfreeze_weights=cfg["unfreeze_weights"],
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)
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target_layer = find_last_conv(model.image_encoder)
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MODEL_CACHE[model_key] = (model, GradCAMPlusPlus(model, target_layer))
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print("
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return MODEL_CACHE[model_key]
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@@ -214,14 +290,17 @@ def _get_model_and_cam(model_key):
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def run_inference(image_pil, metadata_text, model_key=None):
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model, cam = _get_model_and_cam(model_key)
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image_tensor = process_image_pil(image_pil, DEVICE)
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metadata_tensor = process_metadata_pad20(
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metadata_text,
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ENCODER_DIR,
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DEVICE
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)
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with torch.no_grad():
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logits = model(image_tensor, metadata_tensor)
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probs = torch.softmax(logits, dim=1)
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pred_class = torch.argmax(probs, dim=1).item()
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confidence = probs[0, pred_class].item()
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heatmap = cam.generate(
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image_tensor,
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metadata_tensor,
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pred_class
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)
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fig, ax = plt.subplots(figsize=(6,6))
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ax.imshow(image_pil)
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ax.imshow(heatmap, cmap="jet", alpha=0.4)
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ax.axis("off")
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result = np.array(fig.canvas.renderer.buffer_rgba())
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plt.close(fig)
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-
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import os
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import logging
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from glob import glob
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import matplotlib.pyplot as plt
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import numpy as np
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import torch
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from models.preprocessing import process_image_pil, process_metadata_pad20
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from models.model_loader import load_model, find_last_conv
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from models.cam import GradCAMPlusPlus
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logging.basicConfig(level=logging.INFO)
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DEVICE = torch.device("cuda" if torch.cuda.is_available() else "cpu")
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PROJECT_ROOT = os.path.abspath(os.path.join(os.path.dirname(__file__), "..", ".."))
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CLASS_LIST = ["NEV", "BCC", "ACK", "SEK", "SCC", "MEL"]
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ENCODER_DIR = os.path.join(PROJECT_ROOT, "data", "preprocess_data")
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MODEL_ROOT_PATTERNS = [
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"model_*_with_one-hot-encoder_512_with_best_architecture",
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),
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]
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+
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PREFERRED_FOLD = 3
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IMPLEMENTED_ATTENTION_MECHANISMS = {
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"no-metadata",
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MODEL_LABELS = {}
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MODEL_CACHE = {}
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DEFAULT_MODEL_KEY = None
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_DISCOVERED = False
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def _debug_paths() -> None:
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print(f"[inference] DEVICE={DEVICE}")
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print(f"[inference] PROJECT_ROOT={PROJECT_ROOT}")
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print(f"[inference] ENCODER_DIR={ENCODER_DIR}")
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print(f"[inference] ENCODER_DIR exists? {os.path.exists(ENCODER_DIR)}")
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data_root = os.path.join(PROJECT_ROOT, "data")
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weights_root = os.path.join(data_root, "weights")
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to_be_used_root = os.path.join(weights_root, "TO_BE_USED")
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print(f"[inference] data root={data_root}")
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print(f"[inference] data root exists? {os.path.exists(data_root)}")
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print(f"[inference] weights root={weights_root}")
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print(f"[inference] weights root exists? {os.path.exists(weights_root)}")
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print(f"[inference] TO_BE_USED root={to_be_used_root}")
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print(f"[inference] TO_BE_USED root exists? {os.path.exists(to_be_used_root)}")
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for pattern in MODEL_ROOT_PATTERNS:
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print(f"[inference] MODEL_ROOT_PATTERN={pattern}")
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def _parse_cnn_model_name(model_dir_name: str):
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prefix = "model_"
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suffix = "_with_one-hot-encoder_512_with_best_architecture"
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if not model_dir_name.startswith(prefix) or not model_dir_name.endswith(suffix):
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return model_dir_name[len(prefix):-len(suffix)]
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def _find_fold_dir(model_root: str, cnn_model_name: str):
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fold_dirs = sorted(glob(os.path.join(model_root, f"{cnn_model_name}_fold_*")))
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if not fold_dirs:
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return None
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return None
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+
def _extract_fold_number(fold_dir: str) -> str:
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name = os.path.basename(fold_dir)
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return name.split("_fold_")[-1] if "_fold_" in name else "?"
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def _extract_path_metadata(model_root: str):
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parts = os.path.normpath(model_root).split(os.sep)
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mechanism = os.path.basename(os.path.dirname(model_root))
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unfreeze_weights = "unfrozen_weights"
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return mechanism, unfreeze_weights, num_heads
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+
def _discover_models() -> None:
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global DEFAULT_MODEL_KEY
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print("[inference] starting model discovery...")
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MODEL_CONFIGS.clear()
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MODEL_LABELS.clear()
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DEFAULT_MODEL_KEY = None
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model_roots = sorted({
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path
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for pattern in MODEL_ROOT_PATTERNS
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for path in glob(pattern)
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})
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+
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print(f"[inference] candidate model roots found: {len(model_roots)}")
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for idx, path in enumerate(model_roots[:20], start=1):
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print(f"[inference] candidate[{idx}] = {path}")
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if len(model_roots) > 20:
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print("[inference] ... additional candidates omitted from log ...")
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for model_root in model_roots:
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mechanism, unfreeze_weights, num_heads = _extract_path_metadata(model_root)
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model_dir_name = os.path.basename(model_root)
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cnn_model_name = _parse_cnn_model_name(model_dir_name)
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+
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if cnn_model_name is None:
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print(f"[inference] skipping invalid model dir name: {model_dir_name}")
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continue
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fold_dir = _find_fold_dir(model_root, cnn_model_name)
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if fold_dir is None:
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print(f"[inference] no valid fold dir found for: {model_root}")
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continue
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model_path = os.path.join(fold_dir, "model.pth")
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if not os.path.exists(model_path):
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print(f"[inference] missing model.pth: {model_path}")
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continue
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+
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fold_number = _extract_fold_number(fold_dir)
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model_key = f"{mechanism}|{cnn_model_name}|{unfreeze_weights}|{num_heads}|{fold_number}"
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supported = mechanism in IMPLEMENTED_ATTENTION_MECHANISMS
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"label": label,
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}
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MODEL_LABELS[model_key] = label
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print(f"[inference] registered model: {label}")
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preferred_defaults = [
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key for key, cfg in MODEL_CONFIGS.items()
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elif MODEL_CONFIGS:
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DEFAULT_MODEL_KEY = sorted(MODEL_CONFIGS.keys())[0]
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print(f"[inference] discovery done. models={len(MODEL_CONFIGS)}")
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print(f"[inference] DEFAULT_MODEL_KEY={DEFAULT_MODEL_KEY}")
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+
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+
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def ensure_models_discovered() -> None:
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global _DISCOVERED
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if _DISCOVERED:
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return
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_debug_paths()
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_discover_models()
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_DISCOVERED = True
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def get_available_model_choices():
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ensure_models_discovered()
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return [(MODEL_LABELS[key], key) for key in sorted(MODEL_LABELS.keys())]
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def get_default_model_key():
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ensure_models_discovered()
|
| 227 |
return DEFAULT_MODEL_KEY
|
| 228 |
|
| 229 |
|
| 230 |
def get_model_label(model_key):
|
| 231 |
+
ensure_models_discovered()
|
| 232 |
return MODEL_LABELS.get(model_key, "Unknown model")
|
| 233 |
|
| 234 |
|
| 235 |
def _get_model_and_cam(model_key):
|
| 236 |
+
ensure_models_discovered()
|
| 237 |
+
|
| 238 |
if not MODEL_CONFIGS:
|
| 239 |
raise RuntimeError(
|
| 240 |
+
f"No compatible model checkpoints were found in "
|
| 241 |
+
f"{os.path.join(PROJECT_ROOT, 'data', 'weights')}. "
|
| 242 |
+
f"Please verify that the model assets were uploaded to the Space."
|
| 243 |
+
)
|
| 244 |
+
|
| 245 |
+
if not os.path.exists(ENCODER_DIR):
|
| 246 |
+
raise RuntimeError(
|
| 247 |
+
f"Metadata encoder directory not found: {ENCODER_DIR}. "
|
| 248 |
+
"Please verify that preprocess artifacts were uploaded to the Space."
|
| 249 |
)
|
| 250 |
|
| 251 |
if model_key is None:
|
|
|
|
| 266 |
|
| 267 |
if model_key not in MODEL_CACHE:
|
| 268 |
model_path = cfg["model_path"]
|
| 269 |
+
print(f"[inference] loading model from: {model_path}")
|
| 270 |
+
|
| 271 |
model = load_model(
|
| 272 |
device=DEVICE,
|
| 273 |
model_path=model_path,
|
|
|
|
| 276 |
num_heads=cfg["num_heads"],
|
| 277 |
unfreeze_weights=cfg["unfreeze_weights"],
|
| 278 |
)
|
| 279 |
+
|
| 280 |
+
print("[inference] locating final conv layer...")
|
| 281 |
target_layer = find_last_conv(model.image_encoder)
|
| 282 |
+
|
| 283 |
+
print("[inference] creating GradCAM++ object...")
|
| 284 |
MODEL_CACHE[model_key] = (model, GradCAMPlusPlus(model, target_layer))
|
| 285 |
+
print("[inference] model ready.")
|
| 286 |
|
| 287 |
return MODEL_CACHE[model_key]
|
| 288 |
|
|
|
|
| 290 |
def run_inference(image_pil, metadata_text, model_key=None):
|
| 291 |
model, cam = _get_model_and_cam(model_key)
|
| 292 |
|
| 293 |
+
print("[inference] processing image...")
|
| 294 |
image_tensor = process_image_pil(image_pil, DEVICE)
|
| 295 |
|
| 296 |
+
print("[inference] processing metadata...")
|
| 297 |
metadata_tensor = process_metadata_pad20(
|
| 298 |
metadata_text,
|
| 299 |
ENCODER_DIR,
|
| 300 |
DEVICE
|
| 301 |
)
|
| 302 |
|
| 303 |
+
print("[inference] running forward pass...")
|
| 304 |
with torch.no_grad():
|
| 305 |
logits = model(image_tensor, metadata_tensor)
|
| 306 |
probs = torch.softmax(logits, dim=1)
|
|
|
|
| 308 |
pred_class = torch.argmax(probs, dim=1).item()
|
| 309 |
confidence = probs[0, pred_class].item()
|
| 310 |
|
| 311 |
+
print("[inference] generating heatmap...")
|
| 312 |
heatmap = cam.generate(
|
| 313 |
image_tensor,
|
| 314 |
metadata_tensor,
|
| 315 |
pred_class
|
| 316 |
)
|
| 317 |
|
| 318 |
+
fig, ax = plt.subplots(figsize=(6, 6))
|
| 319 |
ax.imshow(image_pil)
|
| 320 |
ax.imshow(heatmap, cmap="jet", alpha=0.4)
|
| 321 |
ax.axis("off")
|
|
|
|
| 327 |
result = np.array(fig.canvas.renderer.buffer_rgba())
|
| 328 |
plt.close(fig)
|
| 329 |
|
| 330 |
+
print(f"[inference] inference complete: {title}")
|
| 331 |
+
return result, title
|