vitarisk-ml / api /utils.py
xDzaky
Deploy Vitarisk ML service
c4035de
"""Helper functions for model loading and prediction."""
import os
import subprocess
import sys
import warnings
import joblib
import pandas as pd
from sklearn.exceptions import InconsistentVersionWarning
BASE_DIR = os.path.dirname(os.path.abspath(__file__))
MODELS_DIR = os.path.join(BASE_DIR, "..", "models")
ML_DIR = os.path.abspath(os.path.join(BASE_DIR, ".."))
DISEASES = ("heart", "diabetes", "cholesterol")
def load_all_models():
"""Load all models + scalers + feature metadata at startup."""
loaded = {}
load_errors = {}
for d in DISEASES:
model_path = os.path.join(MODELS_DIR, f"{d}_model.joblib")
scaler_path = os.path.join(MODELS_DIR, f"{d}_scaler.joblib")
feat_path = os.path.join(MODELS_DIR, f"{d}_features.joblib")
try:
with warnings.catch_warnings():
warnings.simplefilter("error", InconsistentVersionWarning)
loaded[f"{d}_model"] = joblib.load(model_path)
loaded[f"{d}_scaler"] = joblib.load(scaler_path)
loaded[f"{d}_features"] = joblib.load(feat_path)
print(f" {d.capitalize()} model loaded")
except FileNotFoundError:
print(f" {d.capitalize()} model not found at {model_path}")
print(f" Run: python ml/train_{d}.py first")
loaded[f"{d}_model"] = None
loaded[f"{d}_scaler"] = None
loaded[f"{d}_features"] = None
load_errors[d] = "model files not found"
except InconsistentVersionWarning as exc:
print(f" {d.capitalize()} model version mismatch detected")
print(f" {exc}")
loaded[f"{d}_model"] = None
loaded[f"{d}_scaler"] = None
loaded[f"{d}_features"] = None
load_errors[d] = f"incompatible artifact: {exc}"
except Exception as exc:
print(f" {d.capitalize()} model failed to load")
print(f" {type(exc).__name__}: {exc}")
loaded[f"{d}_model"] = None
loaded[f"{d}_scaler"] = None
loaded[f"{d}_features"] = None
load_errors[d] = f"{type(exc).__name__}: {exc}"
loaded["_load_errors"] = load_errors
return loaded
def get_missing_or_failed_diseases(models: dict) -> list[str]:
"""Return diseases with missing or failed model bundles."""
unavailable = []
for disease in DISEASES:
if (
models.get(f"{disease}_model") is None
or models.get(f"{disease}_scaler") is None
or models.get(f"{disease}_features") is None
):
unavailable.append(disease)
return unavailable
def retrain_models(diseases: list[str] | tuple[str, ...] | None = None) -> None:
"""Rebuild one or more model bundles using the current runtime dependencies."""
diseases_to_train = list(diseases or DISEASES)
for disease in diseases_to_train:
script_path = os.path.join(ML_DIR, f"train_{disease}.py")
print(f" Rebuilding {disease} model from {script_path}")
completed = subprocess.run(
[sys.executable, script_path],
cwd=ML_DIR,
check=False,
capture_output=True,
text=True,
)
if completed.stdout:
print(completed.stdout)
if completed.stderr:
print(completed.stderr)
if completed.returncode != 0:
raise RuntimeError(
f"Training script failed for {disease} with exit code {completed.returncode}"
)
def ensure_models_ready(auto_rebuild: bool = True) -> dict:
"""Load models and rebuild them automatically when artifacts are incompatible."""
models = load_all_models()
failed_diseases = get_missing_or_failed_diseases(models)
if not failed_diseases or not auto_rebuild:
return models
print("Some model artifacts are missing or incompatible with this runtime.")
print(f" Affected diseases: {', '.join(failed_diseases)}")
print(" Attempting to rebuild all models using the current environment...")
retrain_models()
models = load_all_models()
remaining_failures = get_missing_or_failed_diseases(models)
if remaining_failures:
raise RuntimeError(
"Model rebuild completed but some models are still unavailable: "
+ ", ".join(remaining_failures)
)
print("Model rebuild complete. All models loaded successfully.")
return models
def validate_input(data: dict, required_fields: list) -> str | None:
"""Returns error string if validation fails, None if OK."""
for field in required_fields:
if field not in data or data[field] is None or data[field] == "":
return f"Field '{field}' wajib diisi"
return None
def get_risk_level(probability: float) -> dict:
"""Convert probability (0-1) to risk level label + color."""
pct = round(probability * 100, 1)
if probability <= 0.30:
return {"risk_percent": pct, "risk_level": "Rendah", "risk_color": "green"}
elif probability <= 0.60:
return {"risk_percent": pct, "risk_level": "Sedang", "risk_color": "yellow"}
else:
return {"risk_percent": pct, "risk_level": "Tinggi", "risk_color": "red"}
def get_top_factors(feature_importance: dict, top_n: int = 5) -> list:
"""Return top N most important features as human-readable labels."""
sorted_feats = sorted(
feature_importance.items(),
key=lambda x: x[1]["importance"],
reverse=True
)
return [data["label_id"] for _, data in sorted_feats[:top_n]]
MODIFIERS = {
# (field, value_check_fn): probability_delta
"family_history_yes": +0.05,
"smoking_active": +0.08,
"smoking_occasional": +0.03,
"diet_fat_daily": +0.05,
"diet_fat_frequent": +0.03,
"diet_sweet_daily": +0.05,
"diet_sweet_frequent": +0.02,
"exercise_never": +0.05,
"alcohol_frequent": +0.03,
}
def apply_lifestyle_modifiers(base_prob: float, data: dict) -> float:
"""Add lifestyle risk modifiers not present in training dataset."""
delta = 0.0
# Family history
if str(data.get("family_history", "tidak")).lower() in ("ya", "yes", "1", "true"):
delta += MODIFIERS["family_history_yes"]
# Smoking
smoking = str(data.get("smoking", "tidak")).lower()
if smoking in ("aktif setiap hari", "active", "yes", "ya", "1", "true"):
delta += MODIFIERS["smoking_active"]
elif smoking in ("kadang-kadang", "occasional"):
delta += MODIFIERS["smoking_occasional"]
# Diet fat (for cholesterol & heart)
diet_fat = str(data.get("diet_fat", "jarang")).lower()
if diet_fat in ("setiap hari", "daily"):
delta += MODIFIERS["diet_fat_daily"]
elif diet_fat in ("3-5x seminggu", "frequent"):
delta += MODIFIERS["diet_fat_frequent"]
# Diet sweet (for diabetes)
diet_sweet = str(data.get("diet_sweet", "jarang")).lower()
if diet_sweet in ("setiap hari", "daily"):
delta += MODIFIERS["diet_sweet_daily"]
elif diet_sweet in ("3-5x seminggu", "frequent"):
delta += MODIFIERS["diet_sweet_frequent"]
# Exercise
exercise = str(data.get("exercise_freq", "jarang")).lower()
if exercise in ("tidak pernah", "never", "0"):
delta += MODIFIERS["exercise_never"]
# Alcohol
alcohol = str(data.get("alcohol", "tidak")).lower()
if alcohol in ("sering", "frequent", "yes"):
delta += MODIFIERS["alcohol_frequent"]
# Cap between 0 and 1
return min(1.0, max(0.0, base_prob + delta))
MEDIANS = {
# Heart
"trestbps": 122.0,
"chol": 246.0,
"thalach": 149.0,
"oldpeak": 1.0,
"restecg": 0.0,
"slope": 1.0,
"ca": 0.0,
"thal": 2.0,
# Diabetes
"BloodPressure": 72.0,
"SkinThickness": 29.0,
"Insulin": 125.0,
"DiabetesPedigreeFunction": 0.47,
# Cholesterol
"bmi_default": 27.5,
}
def safe_float(val, fallback: float) -> float:
"""Convert to float, or return fallback if unknown/invalid."""
if val is None:
return fallback
s = str(val).lower().strip()
if s in ("tidak tahu", "unknown", "", "none", "null"):
return fallback
try:
return float(val)
except (ValueError, TypeError):
return fallback
def sex_to_int(val) -> int:
"""Convert sex field to 0/1 (0=female, 1=male)."""
s = str(val).lower().strip()
if s in ("laki-laki", "male", "l", "1"):
return 1
return 0
def fbs_to_int(val) -> int:
"""Fasting blood sugar > 120 mg/dL β†’ 1, else 0."""
s = str(val).lower().strip()
if s in ("ya", "yes", "1", "true"):
return 1
return 0
def cp_to_int(val) -> int:
"""Chest pain type 0-3."""
cp_map = {
"tidak pernah": 0, "none": 0,
"nyeri ringan": 1, "mild": 1,
"nyeri sedang": 2, "moderate": 2,
"nyeri berat": 3, "severe": 3,
}
s = str(val).lower().strip()
return cp_map.get(s, safe_float(val, 0))
def exang_to_int(val) -> int:
"""Exercise induced angina 0/1."""
s = str(val).lower().strip()
if s in ("ya", "yes", "1", "true"):
return 1
return 0
def bmi_from_input(data: dict) -> float:
"""Get BMI from direct input or calculate from weight/height."""
if "bmi" in data and data["bmi"]:
return safe_float(data["bmi"], MEDIANS["bmi_default"])
if "weight_kg" in data and "height_cm" in data:
w = safe_float(data["weight_kg"], 65)
h = safe_float(data["height_cm"], 165) / 100
if h > 0:
return round(w / (h * h), 1)
return MEDIANS["bmi_default"]
def pregnancies_from_input(data: dict) -> int:
"""Get pregnancies count; 0 for males."""
if sex_to_int(data.get("sex", "perempuan")) == 1:
return 0 # male
return int(safe_float(data.get("pregnancies", 0), 0))
def build_feature_frame(feature_names: list, feature_values: list) -> pd.DataFrame:
"""Build a single-row DataFrame to preserve training feature names."""
return pd.DataFrame([feature_values], columns=feature_names)
def predict_scaled_probability(model, scaler, feature_names: list, feature_values: list) -> float:
"""Run scaler + model prediction with consistent feature names."""
feature_frame = build_feature_frame(feature_names, feature_values)
scaled_features = scaler.transform(feature_frame)
return float(model.predict_proba(scaled_features)[0][1])
# ─────────────────────────────────────────────
# 7. PREDICT HEART
# ─────────────────────────────────────────────
def predict_heart(data: dict, models: dict) -> dict:
model = models["heart_model"]
scaler = models["heart_scaler"]
meta = models["heart_features"]
if model is None:
raise RuntimeError("Heart model not loaded. Run train_heart.py first.")
feature_names = meta["feature_names"]
# Build feature vector matching training feature order
feature_values = []
defaults = {
"age": 25, "sex": 1, "cp": 0, "trestbps": 122, "chol": 246,
"fbs": 0, "restecg": 0, "thalach": 149, "exang": 0,
"oldpeak": 1.0, "slope": 1, "ca": 0, "thal": 2
}
for feat in feature_names:
if feat == "age":
feature_values.append(safe_float(data.get("age"), defaults["age"]))
elif feat == "sex":
feature_values.append(sex_to_int(data.get("sex", "laki-laki")))
elif feat == "cp":
feature_values.append(cp_to_int(data.get("cp", 0)))
elif feat == "trestbps":
feature_values.append(safe_float(data.get("trestbps"), MEDIANS["trestbps"]))
elif feat == "chol":
feature_values.append(safe_float(data.get("chol"), MEDIANS["chol"]))
elif feat == "fbs":
feature_values.append(fbs_to_int(data.get("fbs", "tidak")))
elif feat == "restecg":
feature_values.append(safe_float(data.get("restecg"), MEDIANS["restecg"]))
elif feat in ("thalach", "thalch"):
feature_values.append(safe_float(data.get("thalach"), MEDIANS["thalach"]))
elif feat == "exang":
feature_values.append(exang_to_int(data.get("exang", "tidak")))
elif feat == "oldpeak":
feature_values.append(safe_float(data.get("oldpeak"), MEDIANS["oldpeak"]))
elif feat == "slope":
feature_values.append(safe_float(data.get("slope"), MEDIANS["slope"]))
elif feat == "ca":
feature_values.append(safe_float(data.get("ca"), MEDIANS["ca"]))
elif feat == "thal":
feature_values.append(safe_float(data.get("thal"), MEDIANS["thal"]))
else:
feature_values.append(defaults.get(feat, 0))
base_prob = predict_scaled_probability(model, scaler, feature_names, feature_values)
# Apply lifestyle modifiers
final_prob = apply_lifestyle_modifiers(base_prob, data)
risk = get_risk_level(final_prob)
top_factors = get_top_factors(meta["feature_importance"])
return {
"disease": "Penyakit Jantung",
"risk_percent": risk["risk_percent"],
"risk_level": risk["risk_level"],
"risk_color": risk["risk_color"],
"top_factors": top_factors,
"base_probability": round(base_prob * 100, 1),
"lifestyle_adjustment": round((final_prob - base_prob) * 100, 1),
"disclaimer": "Hasil ini adalah estimasi berdasarkan model Machine Learning dan tidak menggantikan diagnosis dokter."
}
# ─────────────────────────────────────────────
# 8. PREDICT DIABETES
# ─────────────────────────────────────────────
def predict_diabetes(data: dict, models: dict) -> dict:
model = models["diabetes_model"]
scaler = models["diabetes_scaler"]
meta = models["diabetes_features"]
if model is None:
raise RuntimeError("Diabetes model not loaded. Run train_diabetes.py first.")
feature_names = meta["feature_names"]
bmi = bmi_from_input(data)
pregnancies = pregnancies_from_input(data)
feature_values = []
for feat in feature_names:
if feat == "Pregnancies":
feature_values.append(pregnancies)
elif feat == "Glucose":
feature_values.append(safe_float(data.get("glucose"), 120))
elif feat == "BloodPressure":
feature_values.append(safe_float(data.get("blood_pressure"), MEDIANS["BloodPressure"]))
elif feat == "SkinThickness":
feature_values.append(safe_float(data.get("skin_thickness"), MEDIANS["SkinThickness"]))
elif feat == "Insulin":
feature_values.append(safe_float(data.get("insulin"), MEDIANS["Insulin"]))
elif feat == "BMI":
feature_values.append(bmi)
elif feat == "DiabetesPedigreeFunction":
# Map family history (Ya/Tidak) β†’ DiabetesPedigreeFunction proxy
fam = str(data.get("family_history", "tidak")).lower()
if fam in ("ya", "yes", "1"):
feature_values.append(0.80) # higher pedigree function β†’ higher risk
elif fam in ("tidak tahu", "unknown"):
feature_values.append(MEDIANS["DiabetesPedigreeFunction"])
else:
feature_values.append(0.25) # low pedigree
elif feat == "Age":
feature_values.append(safe_float(data.get("age"), 25))
else:
feature_values.append(0)
base_prob = predict_scaled_probability(model, scaler, feature_names, feature_values)
final_prob = apply_lifestyle_modifiers(base_prob, data)
risk = get_risk_level(final_prob)
top_factors = get_top_factors(meta["feature_importance"])
return {
"disease": "Diabetes",
"risk_percent": risk["risk_percent"],
"risk_level": risk["risk_level"],
"risk_color": risk["risk_color"],
"top_factors": top_factors,
"base_probability": round(base_prob * 100, 1),
"lifestyle_adjustment": round((final_prob - base_prob) * 100, 1),
"bmi_used": bmi,
"disclaimer": "Hasil ini adalah estimasi berdasarkan model Machine Learning dan tidak menggantikan diagnosis dokter."
}
# ─────────────────────────────────────────────
# 9. PREDICT CHOLESTEROL
# ─────────────────────────────────────────────
def predict_cholesterol(data: dict, models: dict) -> dict:
model = models["cholesterol_model"]
scaler = models["cholesterol_scaler"]
meta = models["cholesterol_features"]
if model is None:
raise RuntimeError("Cholesterol model not loaded. Run train_cholesterol.py first.")
feature_names = meta["feature_names"]
feature_values = []
for feat in feature_names:
if feat == "age":
feature_values.append(safe_float(data.get("age"), 25))
elif feat == "sex":
feature_values.append(sex_to_int(data.get("sex", "laki-laki")))
elif feat == "cp":
feature_values.append(cp_to_int(data.get("cp", 0)))
elif feat == "trestbps":
feature_values.append(safe_float(data.get("trestbps"), MEDIANS["trestbps"]))
elif feat == "fbs":
feature_values.append(fbs_to_int(data.get("fbs", "tidak")))
elif feat == "restecg":
feature_values.append(safe_float(data.get("restecg"), MEDIANS["restecg"]))
elif feat == "thalch":
feature_values.append(safe_float(data.get("thalach"), MEDIANS["thalach"]))
elif feat == "exang":
feature_values.append(exang_to_int(data.get("exang", "tidak")))
elif feat == "oldpeak":
feature_values.append(safe_float(data.get("oldpeak"), MEDIANS["oldpeak"]))
elif feat == "slope":
feature_values.append(safe_float(data.get("slope"), MEDIANS["slope"]))
else:
feature_values.append(0)
base_prob = predict_scaled_probability(model, scaler, feature_names, feature_values)
# Apply lifestyle modifiers
final_prob = apply_lifestyle_modifiers(base_prob, data)
risk = get_risk_level(final_prob)
top_factors = get_top_factors(meta["feature_importance"])
return {
"disease": "Kolesterol Tinggi",
"risk_percent": risk["risk_percent"],
"risk_level": risk["risk_level"],
"risk_color": risk["risk_color"],
"top_factors": top_factors,
"base_probability": round(base_prob * 100, 1),
"lifestyle_adjustment": round((final_prob - base_prob) * 100, 1),
"disclaimer": "Hasil ini adalah estimasi berdasarkan model Machine Learning dan tidak menggantikan diagnosis dokter."
}