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"""
This file contains Dataset classes that are used by torch dataloaders
to fetch batches from hdf5 files.
"""
import os
import h5py
import numpy as np
from copy import deepcopy
from contextlib import contextmanager
from collections import OrderedDict
import torch.utils.data
import robomimic.utils.tensor_utils as TensorUtils
import robomimic.utils.obs_utils as ObsUtils
import robomimic.utils.action_utils as AcUtils
import robomimic.utils.log_utils as LogUtils
class SequenceDataset(torch.utils.data.Dataset):
def __init__(
self,
hdf5_path,
obs_keys,
action_keys,
dataset_keys,
action_config,
frame_stack=1,
seq_length=1,
pad_frame_stack=True,
pad_seq_length=True,
get_pad_mask=False,
goal_mode=None,
hdf5_cache_mode=None,
hdf5_use_swmr=True,
hdf5_normalize_obs=False,
filter_by_attribute=None,
load_next_obs=True,
):
"""
Dataset class for fetching sequences of experience.
Length of the fetched sequence is equal to (@frame_stack - 1 + @seq_length)
Args:
hdf5_path (str): path to hdf5
obs_keys (tuple, list): keys to observation items (image, object, etc) to be fetched from the dataset
action_config (dict): TODO
dataset_keys (tuple, list): keys to dataset items (actions, rewards, etc) to be fetched from the dataset
frame_stack (int): numbers of stacked frames to fetch. Defaults to 1 (single frame).
seq_length (int): length of sequences to sample. Defaults to 1 (single frame).
pad_frame_stack (int): whether to pad sequence for frame stacking at the beginning of a demo. This
ensures that partial frame stacks are observed, such as (s_0, s_0, s_0, s_1). Otherwise, the
first frame stacked observation would be (s_0, s_1, s_2, s_3).
pad_seq_length (int): whether to pad sequence for sequence fetching at the end of a demo. This
ensures that partial sequences at the end of a demonstration are observed, such as
(s_{T-1}, s_{T}, s_{T}, s_{T}). Otherwise, the last sequence provided would be
(s_{T-3}, s_{T-2}, s_{T-1}, s_{T}).
get_pad_mask (bool): if True, also provide padding masks as part of the batch. This can be
useful for masking loss functions on padded parts of the data.
goal_mode (str): either "last" or None. Defaults to None, which is to not fetch goals
hdf5_cache_mode (str): one of ["all", "low_dim", or None]. Set to "all" to cache entire hdf5
in memory - this is by far the fastest for data loading. Set to "low_dim" to cache all
non-image data. Set to None to use no caching - in this case, every batch sample is
retrieved via file i/o. You should almost never set this to None, even for large
image datasets.
hdf5_use_swmr (bool): whether to use swmr feature when opening the hdf5 file. This ensures
that multiple Dataset instances can all access the same hdf5 file without problems.
hdf5_normalize_obs (bool): if True, normalize observations by computing the mean observation
and std of each observation (in each dimension and modality), and normalizing to unit
mean and variance in each dimension.
filter_by_attribute (str): if provided, use the provided filter key to look up a subset of
demonstrations to load
load_next_obs (bool): whether to load next_obs from the dataset
"""
super(SequenceDataset, self).__init__()
self.hdf5_path = os.path.expandvars(os.path.expanduser(hdf5_path))
self.hdf5_use_swmr = hdf5_use_swmr
self.hdf5_normalize_obs = hdf5_normalize_obs
self._hdf5_file = None
assert hdf5_cache_mode in ["all", "low_dim", None]
self.hdf5_cache_mode = hdf5_cache_mode
self.load_next_obs = load_next_obs
self.filter_by_attribute = filter_by_attribute
# get all keys that needs to be fetched
self.obs_keys = tuple(obs_keys)
self.action_keys = tuple(action_keys)
self.dataset_keys = tuple(dataset_keys)
# add action keys to dataset keys
if self.action_keys is not None:
self.dataset_keys = tuple(set(self.dataset_keys).union(set(self.action_keys)))
self.action_config = action_config
self.n_frame_stack = frame_stack
assert self.n_frame_stack >= 1
self.seq_length = seq_length
assert self.seq_length >= 1
self.goal_mode = goal_mode
if self.goal_mode is not None:
assert self.goal_mode in ["last"]
if not self.load_next_obs:
assert self.goal_mode != "last" # we use last next_obs as goal
self.pad_seq_length = pad_seq_length
self.pad_frame_stack = pad_frame_stack
self.get_pad_mask = get_pad_mask
self.load_demo_info(filter_by_attribute=self.filter_by_attribute)
# maybe prepare for observation normalization
self.obs_normalization_stats = None
if self.hdf5_normalize_obs:
self.obs_normalization_stats = self.normalize_obs()
# prepare for action normalization
self.action_normalization_stats = None
# maybe store dataset in memory for fast access
if self.hdf5_cache_mode in ["all", "low_dim"]:
obs_keys_in_memory = self.obs_keys
if self.hdf5_cache_mode == "low_dim":
# only store low-dim observations
obs_keys_in_memory = []
for k in self.obs_keys:
if ObsUtils.key_is_obs_modality(k, "low_dim"):
obs_keys_in_memory.append(k)
self.obs_keys_in_memory = obs_keys_in_memory
self.hdf5_cache = self.load_dataset_in_memory(
demo_list=self.demos,
hdf5_file=self.hdf5_file,
obs_keys=self.obs_keys_in_memory,
dataset_keys=self.dataset_keys,
load_next_obs=self.load_next_obs
)
if self.hdf5_cache_mode == "all":
# cache getitem calls for even more speedup. We don't do this for
# "low-dim" since image observations require calls to getitem anyways.
print("SequenceDataset: caching get_item calls...")
self.getitem_cache = [self.get_item(i) for i in LogUtils.custom_tqdm(range(len(self)))]
# don't need the previous cache anymore
del self.hdf5_cache
self.hdf5_cache = None
else:
self.hdf5_cache = None
self.close_and_delete_hdf5_handle()
def load_demo_info(self, filter_by_attribute=None, demos=None):
"""
Args:
filter_by_attribute (str): if provided, use the provided filter key
to select a subset of demonstration trajectories to load
demos (list): list of demonstration keys to load from the hdf5 file. If
omitted, all demos in the file (or under the @filter_by_attribute
filter key) are used.
"""
# filter demo trajectory by mask
if demos is not None:
self.demos = demos
elif filter_by_attribute is not None:
self.demos = [elem.decode("utf-8") for elem in np.array(self.hdf5_file["mask/{}".format(filter_by_attribute)][:])]
else:
self.demos = list(self.hdf5_file["data"].keys())
# sort demo keys
inds = np.argsort([int(elem[5:]) for elem in self.demos])
self.demos = [self.demos[i] for i in inds]
self.n_demos = len(self.demos)
# keep internal index maps to know which transitions belong to which demos
self._index_to_demo_id = dict() # maps every index to a demo id
self._demo_id_to_start_indices = dict() # gives start index per demo id
self._demo_id_to_demo_length = dict()
# determine index mapping
self.total_num_sequences = 0
for ep in self.demos:
demo_length = self.hdf5_file["data/{}".format(ep)].attrs["num_samples"]
self._demo_id_to_start_indices[ep] = self.total_num_sequences
self._demo_id_to_demo_length[ep] = demo_length
num_sequences = demo_length
# determine actual number of sequences taking into account whether to pad for frame_stack and seq_length
if not self.pad_frame_stack:
num_sequences -= (self.n_frame_stack - 1)
if not self.pad_seq_length:
num_sequences -= (self.seq_length - 1)
if self.pad_seq_length:
assert demo_length >= 1 # sequence needs to have at least one sample
num_sequences = max(num_sequences, 1)
else:
assert num_sequences >= 1 # assume demo_length >= (self.n_frame_stack - 1 + self.seq_length)
for _ in range(num_sequences):
self._index_to_demo_id[self.total_num_sequences] = ep
self.total_num_sequences += 1
@property
def hdf5_file(self):
"""
This property allows for a lazy hdf5 file open.
"""
if self._hdf5_file is None:
self._hdf5_file = h5py.File(self.hdf5_path, 'r', swmr=self.hdf5_use_swmr, libver='latest')
return self._hdf5_file
def close_and_delete_hdf5_handle(self):
"""
Maybe close the file handle.
"""
if self._hdf5_file is not None:
self._hdf5_file.close()
self._hdf5_file = None
@contextmanager
def hdf5_file_opened(self):
"""
Convenient context manager to open the file on entering the scope
and then close it on leaving.
"""
should_close = self._hdf5_file is None
yield self.hdf5_file
if should_close:
self.close_and_delete_hdf5_handle()
def __del__(self):
self.close_and_delete_hdf5_handle()
def __repr__(self):
"""
Pretty print the class and important attributes on a call to `print`.
"""
msg = str(self.__class__.__name__)
msg += " (\n\tpath={}\n\tobs_keys={}\n\tseq_length={}\n\tfilter_key={}\n\tframe_stack={}\n"
msg += "\tpad_seq_length={}\n\tpad_frame_stack={}\n\tgoal_mode={}\n"
msg += "\tcache_mode={}\n"
msg += "\tnum_demos={}\n\tnum_sequences={}\n)"
filter_key_str = self.filter_by_attribute if self.filter_by_attribute is not None else "none"
goal_mode_str = self.goal_mode if self.goal_mode is not None else "none"
cache_mode_str = self.hdf5_cache_mode if self.hdf5_cache_mode is not None else "none"
msg = msg.format(self.hdf5_path, self.obs_keys, self.seq_length, filter_key_str, self.n_frame_stack,
self.pad_seq_length, self.pad_frame_stack, goal_mode_str, cache_mode_str,
self.n_demos, self.total_num_sequences)
return msg
def __len__(self):
"""
Ensure that the torch dataloader will do a complete pass through all sequences in
the dataset before starting a new iteration.
"""
return self.total_num_sequences
def load_dataset_in_memory(self, demo_list, hdf5_file, obs_keys, dataset_keys, load_next_obs):
"""
Loads the hdf5 dataset into memory, preserving the structure of the file. Note that this
differs from `self.getitem_cache`, which, if active, actually caches the outputs of the
`getitem` operation.
Args:
demo_list (list): list of demo keys, e.g., 'demo_0'
hdf5_file (h5py.File): file handle to the hdf5 dataset.
obs_keys (list, tuple): observation keys to fetch, e.g., 'images'
dataset_keys (list, tuple): dataset keys to fetch, e.g., 'actions'
load_next_obs (bool): whether to load next_obs from the dataset
Returns:
all_data (dict): dictionary of loaded data.
"""
all_data = dict()
print("SequenceDataset: loading dataset into memory...")
for ep in LogUtils.custom_tqdm(demo_list):
all_data[ep] = {}
all_data[ep]["attrs"] = {}
all_data[ep]["attrs"]["num_samples"] = hdf5_file["data/{}".format(ep)].attrs["num_samples"]
# get obs
all_data[ep]["obs"] = {k: hdf5_file["data/{}/obs/{}".format(ep, k)][()] for k in obs_keys}
if load_next_obs:
all_data[ep]["next_obs"] = {k: hdf5_file["data/{}/next_obs/{}".format(ep, k)][()] for k in obs_keys}
# get other dataset keys
for k in dataset_keys:
if k in hdf5_file["data/{}".format(ep)]:
all_data[ep][k] = hdf5_file["data/{}/{}".format(ep, k)][()].astype('float32')
else:
all_data[ep][k] = np.zeros((all_data[ep]["attrs"]["num_samples"], 1), dtype=np.float32)
if "model_file" in hdf5_file["data/{}".format(ep)].attrs:
all_data[ep]["attrs"]["model_file"] = hdf5_file["data/{}".format(ep)].attrs["model_file"]
return all_data
def normalize_obs(self):
"""
Computes a dataset-wide mean and standard deviation for the observations
(per dimension and per obs key) and returns it.
"""
# Run through all trajectories. For each one, compute minimal observation statistics, and then aggregate
# with the previous statistics.
ep = self.demos[0]
obs_traj = {k: self.hdf5_file["data/{}/obs/{}".format(ep, k)][()].astype('float32') for k in self.obs_keys}
obs_traj = ObsUtils.process_obs_dict(obs_traj)
merged_stats = _compute_traj_stats(obs_traj)
print("SequenceDataset: normalizing observations...")
for ep in LogUtils.custom_tqdm(self.demos[1:]):
obs_traj = {k: self.hdf5_file["data/{}/obs/{}".format(ep, k)][()].astype('float32') for k in self.obs_keys}
obs_traj = ObsUtils.process_obs_dict(obs_traj)
traj_stats = _compute_traj_stats(obs_traj)
merged_stats = _aggregate_traj_stats(merged_stats, traj_stats)
obs_normalization_stats = { k : {} for k in merged_stats }
for k in merged_stats:
# note we add a small tolerance of 1e-3 for std
obs_normalization_stats[k]["mean"] = merged_stats[k]["mean"].astype(np.float32)
obs_normalization_stats[k]["std"] = (np.sqrt(merged_stats[k]["sqdiff"] / merged_stats[k]["n"]) + 1e-3).astype(np.float32)
return obs_normalization_stats
def get_obs_normalization_stats(self):
"""
Returns dictionary of mean and std for each observation key if using
observation normalization, otherwise None.
Returns:
obs_normalization_stats (dict): a dictionary for observation
normalization. This maps observation keys to dicts
with a "mean" and "std" of shape (1, ...) where ... is the default
shape for the observation.
"""
assert self.hdf5_normalize_obs, "not using observation normalization!"
return deepcopy(self.obs_normalization_stats)
def get_action_traj(self, ep):
action_traj = dict()
for key in self.action_keys:
action_traj[key] = self.hdf5_file["data/{}/{}".format(ep, key)][()].astype('float32')
return action_traj
def get_action_stats(self):
ep = self.demos[0]
action_traj = self.get_action_traj(ep)
action_stats = _compute_traj_stats(action_traj)
print("SequenceDataset: normalizing actions...")
for ep in LogUtils.custom_tqdm(self.demos[1:]):
action_traj = self.get_action_traj(ep)
traj_stats = _compute_traj_stats(action_traj)
action_stats = _aggregate_traj_stats(action_stats, traj_stats)
return action_stats
def set_action_normalization_stats(self, action_normalization_stats):
self.action_normalization_stats = action_normalization_stats
def get_action_normalization_stats(self):
"""
Computes a dataset-wide min, max, mean and standard deviation for the actions
(per dimension) and returns it.
"""
# Run through all trajectories. For each one, compute minimal observation statistics, and then aggregate
# with the previous statistics.
if self.action_normalization_stats is None:
action_stats = self.get_action_stats()
self.action_normalization_stats = action_stats_to_normalization_stats(
action_stats, self.action_config)
return self.action_normalization_stats
def get_dataset_for_ep(self, ep, key):
"""
Helper utility to get a dataset for a specific demonstration.
Takes into account whether the dataset has been loaded into memory.
"""
# check if this key should be in memory
key_should_be_in_memory = (self.hdf5_cache_mode in ["all", "low_dim"])
if key_should_be_in_memory:
# if key is an observation, it may not be in memory
if '/' in key:
key1, key2 = key.split('/')
assert(key1 in ['obs', 'next_obs', 'action_dict'])
if key2 not in self.obs_keys_in_memory:
key_should_be_in_memory = False
if key_should_be_in_memory:
# read cache
if '/' in key:
key1, key2 = key.split('/')
assert(key1 in ['obs', 'next_obs', 'action_dict'])
ret = self.hdf5_cache[ep][key1][key2]
else:
ret = self.hdf5_cache[ep][key]
else:
# read from file
hd5key = "data/{}/{}".format(ep, key)
ret = self.hdf5_file[hd5key]
return ret
def __getitem__(self, index):
"""
Fetch dataset sequence @index (inferred through internal index map), using the getitem_cache if available.
"""
if self.hdf5_cache_mode == "all":
return self.getitem_cache[index]
return self.get_item(index)
def get_item(self, index):
"""
Main implementation of getitem when not using cache.
"""
demo_id = self._index_to_demo_id[index]
demo_start_index = self._demo_id_to_start_indices[demo_id]
demo_length = self._demo_id_to_demo_length[demo_id]
# start at offset index if not padding for frame stacking
demo_index_offset = 0 if self.pad_frame_stack else (self.n_frame_stack - 1)
index_in_demo = index - demo_start_index + demo_index_offset
# end at offset index if not padding for seq length
demo_length_offset = 0 if self.pad_seq_length else (self.seq_length - 1)
end_index_in_demo = demo_length - demo_length_offset
meta = self.get_dataset_sequence_from_demo(
demo_id,
index_in_demo=index_in_demo,
keys=self.dataset_keys,
num_frames_to_stack=self.n_frame_stack - 1, # note: need to decrement self.n_frame_stack by one
seq_length=self.seq_length
)
# determine goal index
goal_index = None
if self.goal_mode == "last":
goal_index = end_index_in_demo - 1
meta["obs"] = self.get_obs_sequence_from_demo(
demo_id,
index_in_demo=index_in_demo,
keys=self.obs_keys,
num_frames_to_stack=self.n_frame_stack - 1,
seq_length=self.seq_length,
prefix="obs"
)
if self.load_next_obs:
meta["next_obs"] = self.get_obs_sequence_from_demo(
demo_id,
index_in_demo=index_in_demo,
keys=self.obs_keys,
num_frames_to_stack=self.n_frame_stack - 1,
seq_length=self.seq_length,
prefix="next_obs"
)
if goal_index is not None:
goal = self.get_obs_sequence_from_demo(
demo_id,
index_in_demo=goal_index,
keys=self.obs_keys,
num_frames_to_stack=0,
seq_length=1,
prefix="next_obs",
)
meta["goal_obs"] = {k: goal[k][0] for k in goal} # remove sequence dimension for goal
# get action components
ac_dict = OrderedDict()
for k in self.action_keys:
ac = meta[k]
# expand action shape if needed
if len(ac.shape) == 1:
ac = ac.reshape(-1, 1)
ac_dict[k] = ac
# normalize actions
action_normalization_stats = self.get_action_normalization_stats()
ac_dict = ObsUtils.normalize_dict(ac_dict, normalization_stats=action_normalization_stats)
# concatenate all action components
meta["actions"] = AcUtils.action_dict_to_vector(ac_dict)
# also return the sampled index
meta["index"] = index
return meta
def get_sequence_from_demo(self, demo_id, index_in_demo, keys, num_frames_to_stack=0, seq_length=1):
"""
Extract a (sub)sequence of data items from a demo given the @keys of the items.
Args:
demo_id (str): id of the demo, e.g., demo_0
index_in_demo (int): beginning index of the sequence wrt the demo
keys (tuple): list of keys to extract
num_frames_to_stack (int): numbers of frame to stack. Seq gets prepended with repeated items if out of range
seq_length (int): sequence length to extract. Seq gets post-pended with repeated items if out of range
Returns:
a dictionary of extracted items.
"""
assert num_frames_to_stack >= 0
assert seq_length >= 1
demo_length = self._demo_id_to_demo_length[demo_id]
assert index_in_demo < demo_length
# determine begin and end of sequence
seq_begin_index = max(0, index_in_demo - num_frames_to_stack)
seq_end_index = min(demo_length, index_in_demo + seq_length)
# determine sequence padding
seq_begin_pad = max(0, num_frames_to_stack - index_in_demo) # pad for frame stacking
seq_end_pad = max(0, index_in_demo + seq_length - demo_length) # pad for sequence length
# make sure we are not padding if specified.
if not self.pad_frame_stack:
assert seq_begin_pad == 0
if not self.pad_seq_length:
assert seq_end_pad == 0
# fetch observation from the dataset file
seq = dict()
for k in keys:
data = self.get_dataset_for_ep(demo_id, k)
seq[k] = data[seq_begin_index: seq_end_index]
seq = TensorUtils.pad_sequence(seq, padding=(seq_begin_pad, seq_end_pad), pad_same=True)
pad_mask = np.array([0] * seq_begin_pad + [1] * (seq_end_index - seq_begin_index) + [0] * seq_end_pad)
pad_mask = pad_mask[:, None].astype(bool)
return seq, pad_mask
def get_obs_sequence_from_demo(self, demo_id, index_in_demo, keys, num_frames_to_stack=0, seq_length=1, prefix="obs"):
"""
Extract a (sub)sequence of observation items from a demo given the @keys of the items.
Args:
demo_id (str): id of the demo, e.g., demo_0
index_in_demo (int): beginning index of the sequence wrt the demo
keys (tuple): list of keys to extract
num_frames_to_stack (int): numbers of frame to stack. Seq gets prepended with repeated items if out of range
seq_length (int): sequence length to extract. Seq gets post-pended with repeated items if out of range
prefix (str): one of "obs", "next_obs"
Returns:
a dictionary of extracted items.
"""
obs, pad_mask = self.get_sequence_from_demo(
demo_id,
index_in_demo=index_in_demo,
keys=tuple('{}/{}'.format(prefix, k) for k in keys),
num_frames_to_stack=num_frames_to_stack,
seq_length=seq_length,
)
obs = {'/'.join(k.split('/')[1:]): obs[k] for k in obs} # strip the prefix
if self.get_pad_mask:
obs["pad_mask"] = pad_mask
return obs
def get_dataset_sequence_from_demo(self, demo_id, index_in_demo, keys, num_frames_to_stack=0, seq_length=1):
"""
Extract a (sub)sequence of dataset items from a demo given the @keys of the items (e.g., states, actions).
Args:
demo_id (str): id of the demo, e.g., demo_0
index_in_demo (int): beginning index of the sequence wrt the demo
keys (tuple): list of keys to extract
num_frames_to_stack (int): numbers of frame to stack. Seq gets prepended with repeated items if out of range
seq_length (int): sequence length to extract. Seq gets post-pended with repeated items if out of range
Returns:
a dictionary of extracted items.
"""
data, pad_mask = self.get_sequence_from_demo(
demo_id,
index_in_demo=index_in_demo,
keys=keys,
num_frames_to_stack=num_frames_to_stack,
seq_length=seq_length,
)
if self.get_pad_mask:
data["pad_mask"] = pad_mask
return data
def get_trajectory_at_index(self, index):
"""
Method provided as a utility to get an entire trajectory, given
the corresponding @index.
"""
demo_id = self.demos[index]
demo_length = self._demo_id_to_demo_length[demo_id]
meta = self.get_dataset_sequence_from_demo(
demo_id,
index_in_demo=0,
keys=self.dataset_keys,
num_frames_to_stack=self.n_frame_stack - 1, # note: need to decrement self.n_frame_stack by one
seq_length=demo_length
)
meta["obs"] = self.get_obs_sequence_from_demo(
demo_id,
index_in_demo=0,
keys=self.obs_keys,
seq_length=demo_length
)
if self.load_next_obs:
meta["next_obs"] = self.get_obs_sequence_from_demo(
demo_id,
index_in_demo=0,
keys=self.obs_keys,
seq_length=demo_length,
prefix="next_obs"
)
meta["ep"] = demo_id
return meta
def get_dataset_sampler(self):
"""
Return instance of torch.utils.data.Sampler or None. Allows
for dataset to define custom sampling logic, such as
re-weighting the probability of samples being drawn.
See the `train` function in scripts/train.py, and torch
`DataLoader` documentation, for more info.
"""
return None
class R2D2Dataset(SequenceDataset):
def get_action_traj(self, ep):
action_traj = dict()
for key in self.action_keys:
action_traj[key] = self.hdf5_file[key][()].astype('float32')
if len(action_traj[key].shape) == 1:
action_traj[key] = np.reshape(action_traj[key], (-1, 1))
return action_traj
def load_demo_info(self, filter_by_attribute=None, demos=None, n_demos=None):
"""
Args:
filter_by_attribute (str): if provided, use the provided filter key
to select a subset of demonstration trajectories to load
demos (list): list of demonstration keys to load from the hdf5 file. If
omitted, all demos in the file (or under the @filter_by_attribute
filter key) are used.
"""
self.demos = ["demo"]
self.n_demos = len(self.demos)
# keep internal index maps to know which transitions belong to which demos
self._index_to_demo_id = dict() # maps every index to a demo id
self._demo_id_to_start_indices = dict() # gives start index per demo id
self._demo_id_to_demo_length = dict()
# segment time stamps
self._demo_id_to_segments = dict()
ep = self.demos[0]
# determine index mapping
self.total_num_sequences = 0
demo_length = self.hdf5_file["action/cartesian_velocity"].shape[0]
self._demo_id_to_start_indices[ep] = self.total_num_sequences
self._demo_id_to_demo_length[ep] = demo_length
# seperate demo into segments for better alignment
gripper_actions = list(self.hdf5_file["action/gripper_position"])
gripper_closed = [1 if x > 0 else 0 for x in gripper_actions]
try:
# find when the gripper fist opens/closes
gripper_close = gripper_closed.index(1)
gripper_open = gripper_close + gripper_closed[gripper_close:].index(0)
except ValueError:
# special case for (invalid) trajectories
gripper_close, gripper_open = int(demo_length / 3), int(demo_length / 3 * 2)
print("No gripper action:", gripper_actions)
self._demo_id_to_segments[ep] = [0, gripper_close, gripper_open, demo_length - 1]
num_sequences = demo_length
# determine actual number of sequences taking into account whether to pad for frame_stack and seq_length
if not self.pad_frame_stack:
num_sequences -= (self.n_frame_stack - 1)
if not self.pad_seq_length:
num_sequences -= (self.seq_length - 1)
if self.pad_seq_length:
assert demo_length >= 1 # sequence needs to have at least one sample
num_sequences = max(num_sequences, 1)
else:
assert num_sequences >= 1 # assume demo_length >= (self.n_frame_stack - 1 + self.seq_length)
for _ in range(num_sequences):
self._index_to_demo_id[self.total_num_sequences] = ep
self.total_num_sequences += 1
def load_dataset_in_memory(self, demo_list, hdf5_file, obs_keys, dataset_keys, load_next_obs):
"""
Loads the hdf5 dataset into memory, preserving the structure of the file. Note that this
differs from `self.getitem_cache`, which, if active, actually caches the outputs of the
`getitem` operation.
Args:
demo_list (list): list of demo keys, e.g., 'demo_0'
hdf5_file (h5py.File): file handle to the hdf5 dataset.
obs_keys (list, tuple): observation keys to fetch, e.g., 'images'
dataset_keys (list, tuple): dataset keys to fetch, e.g., 'actions'
load_next_obs (bool): whether to load next_obs from the dataset
Returns:
all_data (dict): dictionary of loaded data.
"""
all_data = dict()
print("SequenceDataset: loading dataset into memory...")
for ep in LogUtils.custom_tqdm(demo_list):
all_data[ep] = {}
all_data[ep]["attrs"] = {}
all_data[ep]["attrs"]["num_samples"] = hdf5_file["action/cartesian_velocity"].shape[0] # hack to get traj len
# get obs
all_data[ep]["obs"] = {k: hdf5_file["observation/{}".format(k)][()].astype('float32') for k in obs_keys}
if load_next_obs:
raise NotImplementedError
# get other dataset keys
for k in dataset_keys:
if k in hdf5_file.keys():
all_data[ep][k] = hdf5_file["{}".format(k)][()].astype('float32')
else:
raise NotImplementedError
return all_data
def get_dataset_for_ep(self, ep, key, try_to_use_cache=True):
"""
Helper utility to get a dataset for a specific demonstration.
Takes into account whether the dataset has been loaded into memory.
"""
# check if this key should be in memory
key_should_be_in_memory = try_to_use_cache and (self.hdf5_cache_mode in ["all", "low_dim"])
if key_should_be_in_memory:
# if key is an observation, it may not be in memory
if '/' in key:
key_splits = key.split('/')
key1 = key_splits[0]
key2 = "/".join(key_splits[1:])
if key1 == "observation" and key2 not in self.obs_keys_in_memory:
key_should_be_in_memory = False
if key_should_be_in_memory:
# read cache
if '/' in key:
key_splits = key.split('/')
key1 = key_splits[0]
key2 = "/".join(key_splits[1:])
if key1 == "observation":
ret = self.hdf5_cache[ep]["obs"][key2]
else:
ret = self.hdf5_cache[ep][key]
else:
ret = self.hdf5_cache[ep][key]
else:
# read from file
hd5key = "{}".format(key) #"data/{}/{}".format(ep, key)
ret = self.hdf5_file[hd5key]
return ret
def get_sequence_from_demo(self, demo_id, index_in_demo, keys, num_frames_to_stack=0, seq_length=1):
"""
Extract a (sub)sequence of data items from a demo given the @keys of the items.
Args:
demo_id (str): id of the demo, e.g., demo_0
index_in_demo (int): beginning index of the sequence wrt the demo
keys (tuple): list of keys to extract
num_frames_to_stack (int): numbers of frame to stack. Seq gets prepended with repeated items if out of range
seq_length (int): sequence length to extract. Seq gets post-pended with repeated items if out of range
Returns:
a dictionary of extracted items.
"""
assert num_frames_to_stack >= 0
assert seq_length >= 1
demo_length = self._demo_id_to_demo_length[demo_id]
assert index_in_demo < demo_length
# determine begin and end of sequence
seq_begin_index = max(0, index_in_demo - num_frames_to_stack)
seq_end_index = min(demo_length, index_in_demo + seq_length)
# determine sequence padding
seq_begin_pad = max(0, num_frames_to_stack - index_in_demo) # pad for frame stacking
seq_end_pad = max(0, index_in_demo + seq_length - demo_length) # pad for sequence length
# make sure we are not padding if specified.
if not self.pad_frame_stack:
assert seq_begin_pad == 0
if not self.pad_seq_length:
assert seq_end_pad == 0
# fetch observation from the dataset file
seq = dict()
for k in keys:
data = self.get_dataset_for_ep(demo_id, k)
seq[k] = data[seq_begin_index: seq_end_index].astype("float32")
seq = TensorUtils.pad_sequence(seq, padding=(seq_begin_pad, seq_end_pad), pad_same=True)
pad_mask = np.array([0] * seq_begin_pad + [1] * (seq_end_index - seq_begin_index) + [0] * seq_end_pad)
pad_mask = pad_mask[:, None].astype(bool)
return seq, pad_mask
def get_item(self, index):
"""
Main implementation of getitem when not using cache.
"""
demo_id = self._index_to_demo_id[index]
demo_start_index = self._demo_id_to_start_indices[demo_id]
demo_length = self._demo_id_to_demo_length[demo_id]
# start at offset index if not padding for frame stacking
demo_index_offset = 0 if self.pad_frame_stack else (self.n_frame_stack - 1)
index_in_demo = index - demo_start_index + demo_index_offset
# end at offset index if not padding for seq length
demo_length_offset = 0 if self.pad_seq_length else (self.seq_length - 1)
end_index_in_demo = demo_length - demo_length_offset
meta = self.get_dataset_sequence_from_demo(
demo_id,
index_in_demo=index_in_demo,
keys=self.dataset_keys,
num_frames_to_stack=self.n_frame_stack - 1,
seq_length=self.seq_length,
)
# determine goal index
goal_index = None
if self.goal_mode == "last":
goal_index = end_index_in_demo - 1
meta["obs"] = self.get_obs_sequence_from_demo(
demo_id,
index_in_demo=index_in_demo,
keys=self.obs_keys,
num_frames_to_stack=self.n_frame_stack - 1,
seq_length=self.seq_length,
prefix="observation"
)
if self.load_next_obs:
meta["next_obs"] = self.get_obs_sequence_from_demo(
demo_id,
index_in_demo=index_in_demo,
keys=self.obs_keys,
num_frames_to_stack=self.n_frame_stack - 1,
seq_length=self.seq_length,
prefix="next_obs"
)
if goal_index is not None:
goal = self.get_obs_sequence_from_demo(
demo_id,
index_in_demo=goal_index,
keys=self.obs_keys,
num_frames_to_stack=0,
seq_length=1,
prefix="next_obs",
)
meta["goal_obs"] = {k: goal[k][0] for k in goal} # remove sequence dimension for goal
# get action components
ac_dict = OrderedDict()
for k in self.action_keys:
ac = meta[k]
# expand action shape if needed
if len(ac.shape) == 1:
ac = ac.reshape(-1, 1)
ac_dict[k] = ac
# normalize actions
action_normalization_stats = self.get_action_normalization_stats()
ac_dict = ObsUtils.normalize_dict(ac_dict, normalization_stats=action_normalization_stats)
# concatenate all action components
meta["actions"] = AcUtils.action_dict_to_vector(ac_dict)
# keys to reshape
for k in meta["obs"]:
if len(meta["obs"][k].shape) == 1:
meta["obs"][k] = np.expand_dims(meta["obs"][k], axis=1)
# also return the sampled index
meta["index"] = index
return meta
class MetaDataset(torch.utils.data.Dataset):
def __init__(
self,
datasets,
ds_weights,
normalize_weights_by_ds_size=False,
ds_labels=None,
):
super(MetaDataset, self).__init__()
self.datasets = datasets
ds_lens = np.array([len(ds) for ds in self.datasets])
if normalize_weights_by_ds_size:
self.ds_weights = np.array(ds_weights) / ds_lens
else:
self.ds_weights = ds_weights
self._ds_ind_bins = np.cumsum([0] + list(ds_lens))
# cache mode "all" not supported! The action normalization stats of each
# dataset will change after the datasets are already initialized
for ds in self.datasets:
assert ds.hdf5_cache_mode != "all"
# compute ds_labels to one hot ids
if ds_labels is None:
self.ds_labels = ["dummy"]
else:
self.ds_labels = ds_labels
unique_labels = sorted(set(self.ds_labels))
self.ds_labels_to_ids = {}
for i, label in enumerate(sorted(unique_labels)):
one_hot_id = np.zeros(len(unique_labels))
one_hot_id[i] = 1.0
self.ds_labels_to_ids[label] = one_hot_id
# TODO: comment
action_stats = self.get_action_stats()
self.action_normalization_stats = action_stats_to_normalization_stats(
action_stats, self.datasets[0].action_config)
self.set_action_normalization_stats(self.action_normalization_stats)
def __len__(self):
return np.sum([len(ds) for ds in self.datasets])
def __getitem__(self, idx):
ds_ind = np.digitize(idx, self._ds_ind_bins) - 1
ind_in_ds = idx - self._ds_ind_bins[ds_ind]
meta = self.datasets[ds_ind].__getitem__(ind_in_ds)
meta["index"] = idx
ds_label = self.ds_labels[ds_ind]
T = meta["actions"].shape[0]
return meta
def get_ds_label(self, idx):
ds_ind = np.digitize(idx, self._ds_ind_bins) - 1
ds_label = self.ds_labels[ds_ind]
return ds_label
def get_ds_id(self, idx):
ds_ind = np.digitize(idx, self._ds_ind_bins) - 1
ds_label = self.ds_labels[ds_ind]
return self.ds_labels_to_ids[ds_label]
def __repr__(self):
str_output = '\n'.join([ds.__repr__() for ds in self.datasets])
return str_output
def get_dataset_sampler(self):
weights = np.ones(len(self))
for i, (start, end) in enumerate(zip(self._ds_ind_bins[:-1], self._ds_ind_bins[1:])):
weights[start:end] = self.ds_weights[i]
sampler = torch.utils.data.WeightedRandomSampler(
weights=weights,
num_samples=len(self),
replacement=True,
)
return sampler
def get_action_stats(self):
meta_action_stats = self.datasets[0].get_action_stats()
for dataset in self.datasets[1:]:
ds_action_stats = dataset.get_action_stats()
meta_action_stats = _aggregate_traj_stats(meta_action_stats, ds_action_stats)
return meta_action_stats
def set_action_normalization_stats(self, action_normalization_stats):
self.action_normalization_stats = action_normalization_stats
for ds in self.datasets:
ds.set_action_normalization_stats(self.action_normalization_stats)
def get_action_normalization_stats(self):
"""
Computes a dataset-wide min, max, mean and standard deviation for the actions
(per dimension) and returns it.
"""
# Run through all trajectories. For each one, compute minimal observation statistics, and then aggregate
# with the previous statistics.
if self.action_normalization_stats is None:
action_stats = self.get_action_stats()
self.action_normalization_stats = action_stats_to_normalization_stats(
action_stats, self.datasets[0].action_config)
return self.action_normalization_stats
def _compute_traj_stats(traj_obs_dict):
"""
Helper function to compute statistics over a single trajectory of observations.
"""
traj_stats = { k : {} for k in traj_obs_dict }
for k in traj_obs_dict:
traj_stats[k]["n"] = traj_obs_dict[k].shape[0]
traj_stats[k]["mean"] = traj_obs_dict[k].mean(axis=0, keepdims=True) # [1, ...]
traj_stats[k]["sqdiff"] = ((traj_obs_dict[k] - traj_stats[k]["mean"]) ** 2).sum(axis=0, keepdims=True) # [1, ...]
traj_stats[k]["min"] = traj_obs_dict[k].min(axis=0, keepdims=True)
traj_stats[k]["max"] = traj_obs_dict[k].max(axis=0, keepdims=True)
return traj_stats
def _aggregate_traj_stats(traj_stats_a, traj_stats_b):
"""
Helper function to aggregate trajectory statistics.
See https://en.wikipedia.org/wiki/Algorithms_for_calculating_variance#Parallel_algorithm
for more information.
"""
merged_stats = {}
for k in traj_stats_a:
n_a, avg_a, M2_a, min_a, max_a = traj_stats_a[k]["n"], traj_stats_a[k]["mean"], traj_stats_a[k]["sqdiff"], traj_stats_a[k]["min"], traj_stats_a[k]["max"]
n_b, avg_b, M2_b, min_b, max_b = traj_stats_b[k]["n"], traj_stats_b[k]["mean"], traj_stats_b[k]["sqdiff"], traj_stats_b[k]["min"], traj_stats_b[k]["max"]
n = n_a + n_b
mean = (n_a * avg_a + n_b * avg_b) / n
delta = (avg_b - avg_a)
M2 = M2_a + M2_b + (delta ** 2) * (n_a * n_b) / n
min_ = np.minimum(min_a, min_b)
max_ = np.maximum(max_a, max_b)
merged_stats[k] = dict(n=n, mean=mean, sqdiff=M2, min=min_, max=max_)
return merged_stats
def action_stats_to_normalization_stats(action_stats, action_config):
action_normalization_stats = OrderedDict()
for action_key in action_stats.keys():
# get how this action should be normalized from config, default to None
norm_method = action_config[action_key].get("normalization", None)
if norm_method is None:
# no normalization, unit scale, zero offset
action_normalization_stats[action_key] = {
"scale": np.ones_like(action_stats[action_key]["mean"], dtype=np.float32),
"offset": np.zeros_like(action_stats[action_key]["mean"], dtype=np.float32)
}
elif norm_method == "min_max":
# normalize min to -1 and max to 1
range_eps = 1e-4
input_min = action_stats[action_key]["min"].astype(np.float32)
input_max = action_stats[action_key]["max"].astype(np.float32)
# instead of -1 and 1 use numbers just below threshold to prevent numerical instability issues
output_min = -0.999999
output_max = 0.999999
# ignore input dimentions that is too small to prevent division by zero
input_range = input_max - input_min
ignore_dim = input_range < range_eps
input_range[ignore_dim] = output_max - output_min
# expected usage of scale and offset
# normalized_action = (raw_action - offset) / scale
# raw_action = scale * normalized_action + offset
# eq1: input_max = scale * output_max + offset
# eq2: input_min = scale * output_min + offset
# solution for scale and offset
# eq1 - eq2:
# input_max - input_min = scale * (output_max - output_min)
# (input_max - input_min) / (output_max - output_min) = scale <- eq3
# offset = input_min - scale * output_min <- eq4
scale = input_range / (output_max - output_min)
offset = input_min - scale * output_min
offset[ignore_dim] = input_min[ignore_dim] - (output_max + output_min) / 2
action_normalization_stats[action_key] = {
"scale": scale,
"offset": offset
}
elif norm_method == "gaussian":
# normalize to zero mean unit variance
input_mean = action_stats[action_key]["mean"].astype(np.float32)
input_std = np.sqrt(action_stats[action_key]["sqdiff"] / action_stats[action_key]["n"]).astype(np.float32)
# ignore input dimentions that is too small to prevent division by zero
std_eps = 1e-6
ignore_dim = input_std < std_eps
input_std[ignore_dim] = 1.0
action_normalization_stats[action_key] = {
"scale": input_mean,
"offset": input_std
}
else:
raise NotImplementedError(
'action_config.actions.normalization: "{}" is not supported'.format(norm_method))
return action_normalization_stats
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