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total_seqs_AssemblePairs_align Total seqs in AssemblePairs step # Total seq. AssemblePairs pre processing
total_seqs_FilterSeq_quality Total seqs FilterSeq quality step # Total seq. FilterSeq pre processing
pass_seqs_AssemblePairs_align Number of passed seqs in AssemblePairs # Passed seq. AssemblePairs pre processing
pass_seqs_FilterSeq_quality Number of passed seqs in FilterSeq # Passed seq. FilterSeq pre processing
fail_seqs_AssemblePairs_align Number of failed seqs in AssemblePairs # Failed seq. AssemblePairs pre processing
fail_seqs_FilterSeq_quality Number of failed seqs in FilterSeq # Failed seq. FilterSeq pre processing
percentage_pass_seqs_AssemblePairs_align Percentage of passed seqs in AssemblePairs % Passed seq. AssemblePairs pre processing
percentage_pass_seqs_FilterSeq_quality Percentage of passed seqs in FilterSeq % Passed seq. FilterSeq pre processing
median_overlap_AssemblePairs_align Median overlap AssemblePairs step Median Overlap AssemblePairs pre processing
median_quality_FilterSeq_quality Median quality FilterSeq step Median Quality FilterSeq pre processing
percentage_of_gc_content Percentage of GC content % of GC content FastQC FastQC
median_quality_per_sequence Median quality per sequence Median quality per sequence FastQC FastQC
mean_quality_last_10_bases Mean quality of last 10 bases Mean quality of last 10 bases FastQC FastQC
over_represented_sequences Number of over represented sequences # over Rep. Seq. FastQC FastQC
max_percentage_represented_sequences max percentage represented sequences Max % over Rep. Seq. FastQC FastQC
duplicated_percentage_represented_sequences duplicated percentage represented sequences duplicated percentage represented sequences FastQC FastQC
median_v_germline_sequence_start median v germline sequence start Median V germ. seq. Start IgBlast Annotation analysis
NA percentage v germline sequence start % V germ. seq. Start IgBlast Annotation analysis
median_5utr_length median 5utr length Median 5utr length IgBlast Annotation analysis
median_cdr3_length median cdr3 length Median cdr3 length IgBlast Annotation analysis
median_total_sequence_length median total sequence length Median seqs. Lengths IgBlast Annotation analysis
average_percentage_of_muated_based average percentage of muated based Avg % of muated based IgBlast Annotation analysis
percentage_of_sequence_loss percentage of sequence loss % seq. loss From raw read to Clone inference Annotation analysis
percentage_of_singletones percentage of singletones % singletones Clone inference Annotation analysis
median_clone_size median clone size Median clone size Clone inference Annotation analysis
max_clone_size max clone size Max clone size Clone inference Annotation analysis
quantile_99_clone_size 99 quantile clone size 99 Quantile clone size Clone inference Annotation analysis
quantile_90_clone_size 90 quantile clone size 90 Quantile clone size Clone inference Annotation analysis
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