key	text	y_axis	tool	category
total_seqs_AssemblePairs_align	Total seqs in AssemblePairs step	# Total seq.	AssemblePairs	pre processing
total_seqs_FilterSeq_quality	Total seqs FilterSeq quality step	# Total seq.	FilterSeq	pre processing
pass_seqs_AssemblePairs_align	Number of passed seqs in AssemblePairs	# Passed seq.	AssemblePairs	pre processing
pass_seqs_FilterSeq_quality	Number of passed seqs in FilterSeq	# Passed seq.	FilterSeq	pre processing
fail_seqs_AssemblePairs_align	Number of failed seqs in AssemblePairs	# Failed seq.	AssemblePairs	pre processing
fail_seqs_FilterSeq_quality	Number of failed seqs in FilterSeq	# Failed seq.	FilterSeq	pre processing
percentage_pass_seqs_AssemblePairs_align	Percentage of passed seqs in AssemblePairs	% Passed seq.	AssemblePairs	pre processing
percentage_pass_seqs_FilterSeq_quality	Percentage of passed seqs in FilterSeq	% Passed seq.	FilterSeq	pre processing
median_overlap_AssemblePairs_align	Median overlap AssemblePairs step	Median Overlap	AssemblePairs	pre processing
median_quality_FilterSeq_quality	Median quality FilterSeq step	Median Quality	FilterSeq	pre processing
percentage_of_gc_content	Percentage of GC content	% of GC content	FastQC	FastQC
median_quality_per_sequence	Median quality per sequence	Median quality per sequence	FastQC	FastQC
mean_quality_last_10_bases	Mean quality of last 10 bases	Mean quality of last 10 bases	FastQC	FastQC
over_represented_sequences	Number of over represented sequences	# over Rep. Seq.	FastQC	FastQC
max_percentage_represented_sequences	max percentage represented sequences	Max % over Rep. Seq.	FastQC	FastQC
duplicated_percentage_represented_sequences	duplicated percentage represented sequences	duplicated percentage represented sequences	FastQC	FastQC
median_v_germline_sequence_start	median v germline sequence start	Median V germ. seq. Start	IgBlast	Annotation analysis
NA	percentage v germline sequence start	% V germ. seq. Start	IgBlast	Annotation analysis
median_5utr_length	median 5utr length	Median 5utr length	IgBlast	Annotation analysis
median_cdr3_length	median cdr3 length	Median cdr3 length	IgBlast	Annotation analysis
median_total_sequence_length	median total sequence length	Median seqs. Lengths	IgBlast	Annotation analysis
average_percentage_of_muated_based	average percentage of muated based	Avg % of muated based	IgBlast	Annotation analysis
percentage_of_sequence_loss	percentage of sequence loss	% seq. loss	From raw read to Clone inference	Annotation analysis
percentage_of_singletones	percentage of singletones	% singletones	Clone inference	Annotation analysis
median_clone_size	median clone size	Median clone size	Clone inference	Annotation analysis
max_clone_size	max clone size	Max clone size	Clone inference	Annotation analysis
quantile_99_clone_size	99 quantile clone size	99 Quantile clone size	Clone inference	Annotation analysis
quantile_90_clone_size	90 quantile clone size	90 Quantile clone size	Clone inference	Annotation analysis