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import gradio as gr
from pathlib import Path
import base64
# Basic paths
ROOT = Path(__file__).resolve().parent
# Hardcoded logo as base64 (cannot be downloaded)
LOGO_BASE64 = None
try:
with open(ROOT / "paper2agent_logo.txt", "rb") as f:
LOGO_BASE64 = f.read().decode()
except:
pass
# =====================
# Gradio UI Layout Only
# =====================
with gr.Blocks(title="Paper2Agent") as iface:
# Logo at top left (hardcoded, cannot be downloaded)
if LOGO_BASE64:
gr.HTML(f'<img src="data:image/png;base64,{LOGO_BASE64}" style="height:80px;width:auto;" />')
gr.Markdown("""
[Paper](https://arxiv.org/abs/2509.06917) | [GitHub](https://github.com/jmiao24/Paper2Agent)
**TL;DR:** Upload your paper code repo and get an auto-generated mcp.
Please be patient — takes about 20–30 minutes to process.
""", elem_id="intro-md")
# -------- Input/Output Layout --------
with gr.Row():
# ========== LEFT: INPUT ==========
with gr.Column(scale=1):
with gr.Accordion("Input", open=True):
github_in = gr.Textbox(
label="📘 GitHub Repo URL",
placeholder="https://github.com/google-deepmind/alphagenome"
)
key_in = gr.Textbox(
label="🔑 Claude API Key",
placeholder="sk-ant-...",
type="password"
)
repo_key_in = gr.Textbox(
label="🔐 API Key (optional, for repositories requiring authentication)",
placeholder="Enter API key for private repositories",
type="password"
)
tutorials_in = gr.Textbox(
label="📚 Tutorials (optional)",
placeholder="Filter tutorials by title or URL"
)
run_btn = gr.Button("🚀 Run", variant="primary")
example_btn = gr.Button("📝 Use Example Values", variant="secondary")
# Example values info
gr.Markdown("""
<details style="margin-top: 8px; padding: 10px; background: #f8f9fa; border-radius: 6px; border: 1px solid #e0e0e0;">
<summary style="cursor: pointer; font-weight: bold; color: #333;">💡 Example Values</summary>
<div style="margin-top: 10px; font-size: 0.85em;">
<div style="margin-bottom: 8px;">
<div style="font-weight: bold; margin-bottom: 2px;">GitHub URL:</div>
<code style="display: block; background: white; padding: 6px 8px; border-radius: 4px; border: 1px solid #ddd; word-break: break-all;">https://github.com/google-deepmind/alphagenome</code>
</div>
<div style="margin-bottom: 8px;">
<div style="font-weight: bold; margin-bottom: 2px;">Claude API Key:</div>
<code style="display: block; background: white; padding: 6px 8px; border-radius: 4px; border: 1px solid #ddd; word-break: break-all;">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</code>
</div>
<div>
<div style="font-weight: bold; margin-bottom: 2px;">Repo API Key:</div>
<code style="display: block; background: white; padding: 6px 8px; border-radius: 4px; border: 1px solid #ddd; word-break: break-all;">AIzaSyDZ-IxStzMSUElDGWS7U9v6BIDr_0WMoO8</code>
</div>
</div>
</details>
""", elem_id="example-section")
# ========== RIGHT: OUTPUT ==========
with gr.Column(scale=1):
with gr.Accordion("Output", open=True):
# Logs with scrolling enabled
logs_out = gr.Textbox(
label="🧾 Logs",
lines=20,
max_lines=20,
autoscroll=False
)
# Downloads
with gr.Row():
zip_out = gr.File(
label="📦 Download Results (.zip)",
interactive=False,
visible=True,
scale=1
)
overleaf_out = gr.HTML(label="Open in Overleaf")
# Fill example values
def fill_example():
return (
"https://github.com/google-deepmind/alphagenome",
"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",
"AIzaSyDZ-IxStzMSUElDGWS7U9v6BIDr_0WMoO8",
""
)
# Button click handler
def run_pipeline(github_url, repo_api_key, claude_api_key, tutorials_filter):
"""
Run the Paper2Agent pipeline with the provided inputs.
"""
import subprocess
import os
ui_logs = [] # Simplified logs for UI
try:
# Validate inputs
if not github_url or not github_url.strip():
ui_logs.append("❌ Error: GitHub Repo URL is required")
return "\n".join(ui_logs), None, ""
if not claude_api_key or not claude_api_key.strip():
ui_logs.append("❌ Error: Claude API Key is required")
return "\n".join(ui_logs), None, ""
# Create Results folder
results_path = ROOT / "Results"
results_path.mkdir(parents=True, exist_ok=True)
ui_logs.append(f"🚀 Starting Paper2Agent pipeline...")
ui_logs.append(f"📘 GitHub Repo: {github_url}")
ui_logs.append(f"🔑 Claude API Key: {'*' * (len(claude_api_key) - 4)}{claude_api_key[-4:]}")
if tutorials_filter:
ui_logs.append(f"📚 Tutorial Filter: {tutorials_filter}")
ui_logs.append(f"\n📝 Detailed logs will be saved to: Results/log.log")
ui_logs.append("\n" + "="*70)
yield "\n".join(ui_logs), None, ""
# Set environment variable for Claude API key (for SDK initialization)
env = os.environ.copy()
env['ANTHROPIC_API_KEY'] = claude_api_key
env['PYTHONUNBUFFERED'] = '1'
# Build command with unbuffered Python
cmd = [
"python", "-u", "test.py",
"--github_url", github_url
]
# Add repo API key if provided (for repository authentication)
if repo_api_key and repo_api_key.strip():
cmd.extend(["--api", repo_api_key])
if tutorials_filter and tutorials_filter.strip():
cmd.extend(["--tutorials", tutorials_filter])
# Run test.py and capture stdout for UI
process = subprocess.Popen(
cmd,
stdout=subprocess.PIPE,
stderr=subprocess.STDOUT,
text=True,
bufsize=0,
env=env
)
# Stream output to UI
for line in iter(process.stdout.readline, ''):
if line:
stripped_line = line.strip()
if stripped_line:
ui_logs.append(stripped_line)
yield "\n".join(ui_logs), None, ""
process.wait()
if process.returncode == 0:
ui_logs.append("\n" + "="*70)
ui_logs.append("✅ Pipeline completed successfully!")
ui_logs.append("="*70)
# Create zip file from Results folder
zip_file = None
ui_logs.append("\n📦 Creating zip archive from Results folder...")
if results_path.exists():
import shutil
# Create zip file with timestamp
zip_base_name = f"Results"
zip_file_path = ROOT / zip_base_name
try:
# Create zip archive of the entire Results folder
shutil.make_archive(
str(zip_file_path),
'zip',
ROOT,
'Results'
)
zip_file = str(zip_file_path) + ".zip"
ui_logs.append(f"✅ Created zip file: {zip_file}")
ui_logs.append(f"📥 Ready for download!")
ui_logs.append(f"\n📝 Full logs saved to: Results/log.log")
yield "\n".join(ui_logs), zip_file, ""
except Exception as e:
ui_logs.append(f"⚠️ Failed to create zip file: {str(e)}")
yield "\n".join(ui_logs), None, ""
else:
ui_logs.append(f"⚠️ Results folder not found at: {results_path}")
yield "\n".join(ui_logs), None, ""
else:
ui_logs.append("\n" + "="*70)
ui_logs.append(f"❌ Pipeline failed with exit code {process.returncode}")
ui_logs.append(f"📝 Check logs for details: Results/log.log")
ui_logs.append("="*70)
yield "\n".join(ui_logs), None, ""
except Exception as e:
ui_logs.append(f"\n❌ Error: {str(e)}")
ui_logs.append(f"📝 Check logs for details: Results/log.log")
yield "\n".join(ui_logs), None, ""
# Connect example button
example_btn.click(
fn=fill_example,
inputs=[],
outputs=[github_in, key_in, repo_key_in, tutorials_in]
)
# Connect run button
run_btn.click(
fn=run_pipeline,
inputs=[github_in, repo_key_in, key_in, tutorials_in],
outputs=[logs_out, zip_out, overleaf_out]
)
if __name__ == "__main__":
iface.launch(server_name="0.0.0.0", server_port=7860)
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