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Update app.py
Browse files
app.py
CHANGED
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@@ -1,61 +1,81 @@
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import random
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import
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import gradio as gr
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from datasets import load_dataset
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DATASET_REPO = "yashm/bioinformatics-qa-dataset"
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RANDOM_SEED = 42
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random.seed(RANDOM_SEED)
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ds = load_dataset(DATASET_REPO)
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frames = []
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for split_name in ds.keys():
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frames.append(
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df = pd.concat(frames, ignore_index=True)
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required = ["id", "topic", "question", "answer"]
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missing = [c for c in required if c not in df.columns]
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if missing:
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raise ValueError(f"
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df = df[["id", "topic", "question", "answer", "split"]].copy()
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for col in ["topic", "question", "answer"]:
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df[col] = df[col].astype(str).str.strip()
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df = df.dropna(subset=["topic", "question", "answer"])
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df = df[(df["question"] != "") & (df["answer"] != "")]
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df = df.reset_index(drop=True)
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return df
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ALL_TOPICS =
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def
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return (
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f"
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f"
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f"
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f"Best Streak: {best_streak}"
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)
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def
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if topic
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out = out[out["topic"] == topic]
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if keyword and keyword.strip():
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q = keyword.strip().lower()
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out = out[
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@@ -64,105 +84,267 @@ def filter_df(topic, keyword):
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| out["answer"].str.lower().str.contains(q, na=False)
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]
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return out.reset_index(drop=True)
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def
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return "No matching rows found.", "", "", ""
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row = out.sample(1).iloc[0]
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return row["topic"], row["question"], row["answer"], row["split"]
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def
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if pool.empty:
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return (
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"No questions available for this
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gr.update(choices=[], value=None),
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"",
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"",
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)
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row = pool.sample(1).iloc[0]
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correct = row["answer"]
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.dropna()
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.astype(str)
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.str.strip()
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.unique()
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.tolist()
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)
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same_topic_answers = [a for a in same_topic_answers if a and a != correct]
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else:
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def submit_and_next(
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):
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if not
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return (
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"Click
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stats_text(correct_count, total_count, streak, best_streak),
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gr.update(),
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gr.update(),
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correct_count,
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total_count,
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streak,
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best_streak,
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)
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if not
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return (
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"Please select one option.",
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stats_text(correct_count, total_count, streak, best_streak),
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gr.update(),
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gr.update(),
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correct_count,
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total_count,
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streak,
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total_count += 1
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if
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correct_count += 1
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streak += 1
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best_streak = max(best_streak, streak)
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result = (
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"Correct.\n\n"
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f"Your answer: {
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f"Reference answer: {
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)
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else:
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streak = 0
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result = (
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"Incorrect.\n\n"
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f"Your answer: {
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f"Correct answer: {
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)
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next_q, next_choices, next_correct,
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return (
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result,
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stats_text(correct_count, total_count, streak, best_streak),
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next_q,
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next_choices,
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next_correct,
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correct_count,
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total_count,
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streak,
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)
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def
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q, choices, correct, question = generate_question(topic_filter)
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return (
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question,
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stats_text(correct_count, total_count, streak, best_streak),
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"Quiz started. Pick an option and click Submit.",
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)
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gr.
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ex_r_split = gr.Textbox(label="Split", interactive=False)
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fn=get_random_example,
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inputs=[ex_topic, ex_keyword],
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outputs=[ex_r_topic, ex_r_question, ex_r_answer, ex_r_split],
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)
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start_btn = gr.Button("Start Quiz")
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reset_btn = gr.Button("Reset Score")
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quiz_stats = gr.Markdown(value=stats_text(0, 0, 0, 0))
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quiz_status = gr.Textbox(label="Status", interactive=False)
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quiz_question = gr.Textbox(label="Question", lines=5, interactive=False)
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quiz_choices = gr.Radio(choices=[], label="Choose one answer")
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submit_btn = gr.Button("Submit (auto next question)")
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quiz_result = gr.Textbox(label="Last Result", lines=6, interactive=False)
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correct_state = gr.State("")
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question_state = gr.State("")
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correct_count_state = gr.State(0)
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total_count_state = gr.State(0)
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streak_state = gr.State(0)
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best_streak_state = gr.State(0)
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start_btn.click(
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fn=start_quiz,
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inputs=[
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quiz_topic,
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correct_count_state,
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total_count_state,
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streak_state,
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best_streak_state,
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],
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outputs=[
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quiz_question,
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quiz_choices,
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correct_state,
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question_state,
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quiz_stats,
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quiz_status,
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],
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)
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-
fn=submit_and_next,
|
| 324 |
-
inputs=[
|
| 325 |
-
quiz_choices,
|
| 326 |
-
correct_state,
|
| 327 |
-
question_state,
|
| 328 |
-
quiz_topic,
|
| 329 |
-
correct_count_state,
|
| 330 |
-
total_count_state,
|
| 331 |
-
streak_state,
|
| 332 |
-
best_streak_state,
|
| 333 |
-
],
|
| 334 |
-
outputs=[
|
| 335 |
-
quiz_result,
|
| 336 |
-
quiz_stats,
|
| 337 |
-
quiz_question,
|
| 338 |
-
quiz_choices,
|
| 339 |
-
correct_state,
|
| 340 |
-
question_state,
|
| 341 |
-
correct_count_state,
|
| 342 |
-
total_count_state,
|
| 343 |
-
streak_state,
|
| 344 |
-
best_streak_state,
|
| 345 |
-
],
|
| 346 |
-
)
|
| 347 |
|
| 348 |
-
|
| 349 |
-
|
| 350 |
-
|
| 351 |
-
|
| 352 |
-
correct_count_state,
|
| 353 |
-
total_count_state,
|
| 354 |
-
streak_state,
|
| 355 |
-
best_streak_state,
|
| 356 |
-
quiz_stats,
|
| 357 |
-
quiz_status,
|
| 358 |
-
],
|
| 359 |
-
)
|
| 360 |
|
| 361 |
demo.launch()
|
|
|
|
| 1 |
+
import os
|
| 2 |
import random
|
| 3 |
+
import tempfile
|
| 4 |
+
from functools import lru_cache
|
| 5 |
+
from typing import Dict, List, Tuple
|
| 6 |
+
|
| 7 |
import gradio as gr
|
| 8 |
+
import pandas as pd
|
| 9 |
from datasets import load_dataset
|
| 10 |
|
| 11 |
DATASET_REPO = "yashm/bioinformatics-qa-dataset"
|
| 12 |
RANDOM_SEED = 42
|
| 13 |
+
|
| 14 |
random.seed(RANDOM_SEED)
|
| 15 |
|
| 16 |
|
| 17 |
+
@lru_cache(maxsize=1)
|
| 18 |
+
def load_data() -> pd.DataFrame:
|
| 19 |
ds = load_dataset(DATASET_REPO)
|
| 20 |
|
| 21 |
frames = []
|
| 22 |
for split_name in ds.keys():
|
| 23 |
+
part = ds[split_name].to_pandas().copy()
|
| 24 |
+
part["split"] = split_name
|
| 25 |
+
frames.append(part)
|
| 26 |
|
| 27 |
df = pd.concat(frames, ignore_index=True)
|
| 28 |
|
| 29 |
required = ["id", "topic", "question", "answer"]
|
| 30 |
missing = [c for c in required if c not in df.columns]
|
| 31 |
if missing:
|
| 32 |
+
raise ValueError(f"Dataset is missing required columns: {missing}")
|
| 33 |
|
| 34 |
df = df[["id", "topic", "question", "answer", "split"]].copy()
|
| 35 |
+
for col in ["topic", "question", "answer", "split"]:
|
| 36 |
df[col] = df[col].astype(str).str.strip()
|
| 37 |
|
| 38 |
df = df.dropna(subset=["topic", "question", "answer"])
|
| 39 |
df = df[(df["question"] != "") & (df["answer"] != "")]
|
| 40 |
+
df["answer_len"] = df["answer"].str.len()
|
| 41 |
df = df.reset_index(drop=True)
|
| 42 |
|
| 43 |
return df
|
| 44 |
|
| 45 |
|
| 46 |
+
DF = load_data()
|
| 47 |
+
ALL_TOPICS = sorted(DF["topic"].unique().tolist())
|
| 48 |
+
ALL_SPLITS = sorted(DF["split"].unique().tolist())
|
| 49 |
|
| 50 |
|
| 51 |
+
def compute_stats(df: pd.DataFrame) -> str:
|
| 52 |
+
total_rows = len(df)
|
| 53 |
+
total_topics = df["topic"].nunique() if total_rows else 0
|
| 54 |
+
avg_answer_len = float(df["answer_len"].mean()) if total_rows else 0.0
|
| 55 |
return (
|
| 56 |
+
f"Total rows: {total_rows} | "
|
| 57 |
+
f"Unique topics: {total_topics} | "
|
| 58 |
+
f"Average answer length: {avg_answer_len:.1f} chars"
|
|
|
|
| 59 |
)
|
| 60 |
|
| 61 |
|
| 62 |
+
def apply_filters(
|
| 63 |
+
topic: str,
|
| 64 |
+
split: str,
|
| 65 |
+
keyword: str,
|
| 66 |
+
min_len: int,
|
| 67 |
+
max_len: int,
|
| 68 |
+
sort_by: str,
|
| 69 |
+
sort_dir: str
|
| 70 |
+
) -> pd.DataFrame:
|
| 71 |
+
out = DF.copy()
|
| 72 |
|
| 73 |
+
if topic != "All":
|
| 74 |
out = out[out["topic"] == topic]
|
| 75 |
|
| 76 |
+
if split != "All":
|
| 77 |
+
out = out[out["split"] == split]
|
| 78 |
+
|
| 79 |
if keyword and keyword.strip():
|
| 80 |
q = keyword.strip().lower()
|
| 81 |
out = out[
|
|
|
|
| 84 |
| out["answer"].str.lower().str.contains(q, na=False)
|
| 85 |
]
|
| 86 |
|
| 87 |
+
out = out[(out["answer_len"] >= int(min_len)) & (out["answer_len"] <= int(max_len))]
|
| 88 |
+
|
| 89 |
+
col_map = {
|
| 90 |
+
"ID": "id",
|
| 91 |
+
"Topic": "topic",
|
| 92 |
+
"Question length": "question",
|
| 93 |
+
"Answer length": "answer_len",
|
| 94 |
+
"Split": "split",
|
| 95 |
+
}
|
| 96 |
+
sort_col = col_map.get(sort_by, "id")
|
| 97 |
+
ascending = sort_dir == "Ascending"
|
| 98 |
+
out = out.sort_values(by=sort_col, ascending=ascending, kind="stable")
|
| 99 |
+
|
| 100 |
return out.reset_index(drop=True)
|
| 101 |
|
| 102 |
|
| 103 |
+
def run_explore(
|
| 104 |
+
topic: str,
|
| 105 |
+
split: str,
|
| 106 |
+
keyword: str,
|
| 107 |
+
min_len: int,
|
| 108 |
+
max_len: int,
|
| 109 |
+
sort_by: str,
|
| 110 |
+
sort_dir: str,
|
| 111 |
+
page_size: int,
|
| 112 |
+
page_number: int
|
| 113 |
+
):
|
| 114 |
+
filtered = apply_filters(topic, split, keyword, min_len, max_len, sort_by, sort_dir)
|
| 115 |
+
total = len(filtered)
|
| 116 |
+
pages = max(1, (total + page_size - 1) // page_size)
|
| 117 |
+
page_number = min(max(1, page_number), pages)
|
| 118 |
|
| 119 |
+
start = (page_number - 1) * page_size
|
| 120 |
+
end = min(start + page_size, total)
|
| 121 |
+
|
| 122 |
+
page_df = filtered.iloc[start:end].copy()
|
| 123 |
+
table_df = page_df[["id", "topic", "question", "answer", "split", "answer_len"]]
|
| 124 |
+
|
| 125 |
+
summary = (
|
| 126 |
+
f"{compute_stats(filtered)}\n"
|
| 127 |
+
f"Showing rows {start + 1} to {end if total else 0} of {total} | "
|
| 128 |
+
f"Page {page_number} of {pages}"
|
| 129 |
+
)
|
| 130 |
+
|
| 131 |
+
max_row_slider = max(1, len(page_df))
|
| 132 |
+
return (
|
| 133 |
+
summary,
|
| 134 |
+
table_df,
|
| 135 |
+
page_df.to_json(orient="records"),
|
| 136 |
+
gr.update(maximum=pages, value=page_number),
|
| 137 |
+
gr.update(maximum=max_row_slider, value=1),
|
| 138 |
+
)
|
| 139 |
+
|
| 140 |
+
|
| 141 |
+
def show_row_detail(page_df_json: str, row_idx_1based: int):
|
| 142 |
+
if not page_df_json:
|
| 143 |
+
return "No data loaded for this page.", "", "", "", ""
|
| 144 |
+
|
| 145 |
+
page_df = pd.read_json(page_df_json)
|
| 146 |
+
if page_df.empty:
|
| 147 |
+
return "No rows in this page.", "", "", "", ""
|
| 148 |
+
|
| 149 |
+
idx = int(row_idx_1based) - 1
|
| 150 |
+
idx = max(0, min(idx, len(page_df) - 1))
|
| 151 |
+
row = page_df.iloc[idx]
|
| 152 |
+
|
| 153 |
+
header = f"Record {idx + 1} on current page"
|
| 154 |
+
return (
|
| 155 |
+
header,
|
| 156 |
+
str(row["topic"]),
|
| 157 |
+
str(row["question"]),
|
| 158 |
+
str(row["answer"]),
|
| 159 |
+
f"Split: {row['split']} | ID: {row['id']} | Answer length: {row['answer_len']}",
|
| 160 |
+
)
|
| 161 |
+
|
| 162 |
+
|
| 163 |
+
def export_filtered_csv(
|
| 164 |
+
topic: str,
|
| 165 |
+
split: str,
|
| 166 |
+
keyword: str,
|
| 167 |
+
min_len: int,
|
| 168 |
+
max_len: int,
|
| 169 |
+
sort_by: str,
|
| 170 |
+
sort_dir: str
|
| 171 |
+
):
|
| 172 |
+
filtered = apply_filters(topic, split, keyword, min_len, max_len, sort_by, sort_dir)
|
| 173 |
+
export_df = filtered[["id", "topic", "question", "answer", "split"]].copy()
|
| 174 |
|
| 175 |
+
with tempfile.NamedTemporaryFile(delete=False, suffix=".csv") as tmp:
|
| 176 |
+
export_df.to_csv(tmp.name, index=False)
|
| 177 |
+
return tmp.name
|
|
|
|
|
|
|
|
|
|
| 178 |
|
| 179 |
|
| 180 |
+
def related_examples(question_text: str, topic: str, k: int = 3) -> str:
|
| 181 |
+
subset = DF[DF["topic"] == topic].copy()
|
| 182 |
+
if subset.empty:
|
| 183 |
+
return "No related examples found."
|
| 184 |
+
|
| 185 |
+
q_words = set(str(question_text).lower().split())
|
| 186 |
+
if not q_words:
|
| 187 |
+
return "No related examples found."
|
| 188 |
+
|
| 189 |
+
def overlap_score(text: str) -> int:
|
| 190 |
+
return len(q_words.intersection(set(str(text).lower().split())))
|
| 191 |
+
|
| 192 |
+
subset["score"] = subset["question"].apply(overlap_score)
|
| 193 |
+
subset = subset.sort_values(by=["score", "id"], ascending=[False, True])
|
| 194 |
+
subset = subset[subset["question"] != question_text].head(k)
|
| 195 |
+
|
| 196 |
+
if subset.empty:
|
| 197 |
+
return "No related examples found."
|
| 198 |
+
|
| 199 |
+
lines = []
|
| 200 |
+
for _, r in subset.iterrows():
|
| 201 |
+
lines.append(f"- {r['question']}")
|
| 202 |
+
return "\n".join(lines)
|
| 203 |
+
|
| 204 |
+
|
| 205 |
+
def score_text(correct: int, total: int, streak: int, best_streak: int) -> str:
|
| 206 |
+
acc = (100.0 * correct / total) if total > 0 else 0.0
|
| 207 |
+
return (
|
| 208 |
+
f"Score: {correct}/{total} | "
|
| 209 |
+
f"Accuracy: {acc:.1f}% | "
|
| 210 |
+
f"Streak: {streak} | "
|
| 211 |
+
f"Best streak: {best_streak}"
|
| 212 |
+
)
|
| 213 |
+
|
| 214 |
+
|
| 215 |
+
def generate_question(topic_filter: str, difficulty: str):
|
| 216 |
+
pool = DF.copy()
|
| 217 |
+
if topic_filter != "All":
|
| 218 |
+
pool = pool[pool["topic"] == topic_filter]
|
| 219 |
+
|
| 220 |
if pool.empty:
|
| 221 |
return (
|
| 222 |
+
"No questions available for this filter.",
|
| 223 |
gr.update(choices=[], value=None),
|
| 224 |
"",
|
| 225 |
"",
|
| 226 |
+
"",
|
| 227 |
+
"",
|
| 228 |
)
|
| 229 |
|
| 230 |
+
row = pool.sample(1, random_state=random.randint(0, 10_000_000)).iloc[0]
|
| 231 |
+
topic = str(row["topic"])
|
| 232 |
+
question = str(row["question"])
|
| 233 |
+
correct = str(row["answer"])
|
| 234 |
+
|
| 235 |
+
same_topic = DF[(DF["topic"] == topic) & (DF["answer"] != correct)].copy()
|
| 236 |
+
global_pool = DF[DF["answer"] != correct].copy()
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 237 |
|
| 238 |
+
if difficulty == "Easy":
|
| 239 |
+
candidate = global_pool
|
| 240 |
+
elif difficulty == "Medium":
|
| 241 |
+
candidate = same_topic if len(same_topic["answer"].unique()) >= 3 else global_pool
|
| 242 |
else:
|
| 243 |
+
target_len = len(correct)
|
| 244 |
+
hard_pool = same_topic.copy()
|
| 245 |
+
hard_pool["len_gap"] = (hard_pool["answer"].str.len() - target_len).abs()
|
| 246 |
+
hard_pool = hard_pool.sort_values(by=["len_gap", "id"])
|
| 247 |
+
if len(hard_pool["answer"].unique()) >= 3:
|
| 248 |
+
candidate = hard_pool
|
| 249 |
+
elif len(same_topic["answer"].unique()) >= 3:
|
| 250 |
+
candidate = same_topic
|
| 251 |
+
else:
|
| 252 |
+
candidate = global_pool
|
| 253 |
+
|
| 254 |
+
distractor_answers = candidate["answer"].dropna().astype(str).drop_duplicates().tolist()
|
| 255 |
+
if len(distractor_answers) < 3:
|
| 256 |
+
return (
|
| 257 |
+
"Not enough distractors to generate a 4-option question.",
|
| 258 |
+
gr.update(choices=[], value=None),
|
| 259 |
+
"",
|
| 260 |
+
"",
|
| 261 |
+
"",
|
| 262 |
+
"",
|
| 263 |
+
)
|
| 264 |
|
| 265 |
+
distractors = random.sample(distractor_answers, 3)
|
| 266 |
+
options = distractors + [correct]
|
| 267 |
+
random.shuffle(options)
|
| 268 |
|
| 269 |
+
question_block = f"Topic: {topic}\n\nQuestion: {question}"
|
| 270 |
+
|
| 271 |
+
teach_note = (
|
| 272 |
+
f"Teaching note: This question belongs to {topic}. "
|
| 273 |
+
f"Focus on core definitions and tool usage terms."
|
| 274 |
+
)
|
| 275 |
+
related = related_examples(question, topic, k=3)
|
| 276 |
+
|
| 277 |
+
return (
|
| 278 |
+
question_block,
|
| 279 |
+
gr.update(choices=options, value=None),
|
| 280 |
+
correct,
|
| 281 |
+
question,
|
| 282 |
+
topic,
|
| 283 |
+
f"{teach_note}\n\nRelated questions:\n{related}",
|
| 284 |
+
)
|
| 285 |
+
|
| 286 |
+
|
| 287 |
+
def start_quiz(
|
| 288 |
+
topic_filter: str,
|
| 289 |
+
difficulty: str,
|
| 290 |
+
correct_count: int,
|
| 291 |
+
total_count: int,
|
| 292 |
+
streak: int,
|
| 293 |
+
best_streak: int
|
| 294 |
+
):
|
| 295 |
+
q, choices, correct, raw_q, raw_topic, teach = generate_question(topic_filter, difficulty)
|
| 296 |
+
return (
|
| 297 |
+
q,
|
| 298 |
+
choices,
|
| 299 |
+
correct,
|
| 300 |
+
raw_q,
|
| 301 |
+
raw_topic,
|
| 302 |
+
teach,
|
| 303 |
+
score_text(correct_count, total_count, streak, best_streak),
|
| 304 |
+
"Quiz started. Select an answer and submit.",
|
| 305 |
+
)
|
| 306 |
|
| 307 |
|
| 308 |
def submit_and_next(
|
| 309 |
+
selected: str,
|
| 310 |
+
current_correct: str,
|
| 311 |
+
current_q: str,
|
| 312 |
+
current_topic: str,
|
| 313 |
+
topic_filter: str,
|
| 314 |
+
difficulty: str,
|
| 315 |
+
correct_count: int,
|
| 316 |
+
total_count: int,
|
| 317 |
+
streak: int,
|
| 318 |
+
best_streak: int
|
| 319 |
):
|
| 320 |
+
if not current_correct or not current_q:
|
| 321 |
return (
|
| 322 |
+
"Click Start Quiz first.",
|
|
|
|
| 323 |
gr.update(),
|
| 324 |
gr.update(),
|
| 325 |
+
current_correct,
|
| 326 |
+
current_q,
|
| 327 |
+
current_topic,
|
| 328 |
+
"",
|
| 329 |
+
score_text(correct_count, total_count, streak, best_streak),
|
| 330 |
+
"No active question.",
|
| 331 |
correct_count,
|
| 332 |
total_count,
|
| 333 |
streak,
|
| 334 |
best_streak,
|
| 335 |
)
|
| 336 |
|
| 337 |
+
if not selected:
|
| 338 |
return (
|
| 339 |
+
"Please select one option before submitting.",
|
|
|
|
| 340 |
gr.update(),
|
| 341 |
gr.update(),
|
| 342 |
+
current_correct,
|
| 343 |
+
current_q,
|
| 344 |
+
current_topic,
|
| 345 |
+
"",
|
| 346 |
+
score_text(correct_count, total_count, streak, best_streak),
|
| 347 |
+
"Waiting for answer selection.",
|
| 348 |
correct_count,
|
| 349 |
total_count,
|
| 350 |
streak,
|
|
|
|
| 352 |
)
|
| 353 |
|
| 354 |
total_count += 1
|
| 355 |
+
if selected == current_correct:
|
| 356 |
correct_count += 1
|
| 357 |
streak += 1
|
| 358 |
best_streak = max(best_streak, streak)
|
| 359 |
result = (
|
| 360 |
"Correct.\n\n"
|
| 361 |
+
f"Your answer: {selected}\n\n"
|
| 362 |
+
f"Reference answer: {current_correct}"
|
| 363 |
)
|
| 364 |
else:
|
| 365 |
streak = 0
|
| 366 |
result = (
|
| 367 |
"Incorrect.\n\n"
|
| 368 |
+
f"Your answer: {selected}\n\n"
|
| 369 |
+
f"Correct answer: {current_correct}"
|
| 370 |
)
|
| 371 |
|
| 372 |
+
next_q, next_choices, next_correct, next_raw_q, next_raw_topic, next_teach = generate_question(
|
| 373 |
+
topic_filter, difficulty
|
| 374 |
+
)
|
| 375 |
|
| 376 |
return (
|
| 377 |
result,
|
|
|
|
| 378 |
next_q,
|
| 379 |
next_choices,
|
| 380 |
next_correct,
|
| 381 |
+
next_raw_q,
|
| 382 |
+
next_raw_topic,
|
| 383 |
+
next_teach,
|
| 384 |
+
score_text(correct_count, total_count, streak, best_streak),
|
| 385 |
+
"Auto-loaded next question.",
|
| 386 |
correct_count,
|
| 387 |
total_count,
|
| 388 |
streak,
|
|
|
|
| 390 |
)
|
| 391 |
|
| 392 |
|
| 393 |
+
def reset_score():
|
|
|
|
| 394 |
return (
|
| 395 |
+
0, 0, 0, 0,
|
| 396 |
+
score_text(0, 0, 0, 0),
|
| 397 |
+
"Score reset. Click Start Quiz."
|
|
|
|
|
|
|
|
|
|
| 398 |
)
|
| 399 |
|
| 400 |
|
| 401 |
+
CSS = """
|
| 402 |
+
:root {
|
| 403 |
+
--brand: #0f766e;
|
| 404 |
+
--accent: #0ea5e9;
|
| 405 |
+
--bg-soft: #f8fafc;
|
| 406 |
+
--card: #ffffff;
|
| 407 |
+
--text: #0f172a;
|
| 408 |
+
--muted: #475569;
|
| 409 |
+
}
|
| 410 |
+
body {
|
| 411 |
+
background: linear-gradient(180deg, #f0fdfa 0%, #f8fafc 35%, #ffffff 100%);
|
| 412 |
+
}
|
| 413 |
+
.gradio-container {
|
| 414 |
+
max-width: 1280px !important;
|
| 415 |
+
}
|
| 416 |
+
#hero {
|
| 417 |
+
background: linear-gradient(135deg, rgba(15,118,110,0.10), rgba(14,165,233,0.10));
|
| 418 |
+
border: 1px solid rgba(15,118,110,0.20);
|
| 419 |
+
border-radius: 16px;
|
| 420 |
+
padding: 14px 16px;
|
| 421 |
+
}
|
| 422 |
+
#hero h1, #hero p {
|
| 423 |
+
color: var(--text);
|
| 424 |
+
}
|
| 425 |
+
.card {
|
| 426 |
+
background: var(--card);
|
| 427 |
+
border-radius: 14px;
|
| 428 |
+
border: 1px solid #e2e8f0;
|
| 429 |
+
padding: 10px 12px;
|
| 430 |
+
}
|
| 431 |
+
"""
|
| 432 |
+
|
| 433 |
+
with gr.Blocks(
|
| 434 |
+
title="Bioinformatics QA Teaching Studio",
|
| 435 |
+
css=CSS,
|
| 436 |
+
theme=gr.themes.Soft(
|
| 437 |
+
primary_hue="teal",
|
| 438 |
+
secondary_hue="sky",
|
| 439 |
+
neutral_hue="slate"
|
| 440 |
+
),
|
| 441 |
+
) as demo:
|
| 442 |
+
gr.HTML(
|
| 443 |
+
"""
|
| 444 |
+
<div id="hero">
|
| 445 |
+
<h1>Bioinformatics QA Teaching Studio</h1>
|
| 446 |
+
<p>
|
| 447 |
+
Explore the dataset, learn core concepts, and practice with teaching-mode multiple-choice quizzes.
|
| 448 |
+
This app is for learning and research purposes only. Validate content before high-stakes use.
|
| 449 |
+
</p>
|
| 450 |
+
</div>
|
| 451 |
+
"""
|
| 452 |
)
|
| 453 |
|
| 454 |
+
with gr.Tabs():
|
| 455 |
+
with gr.Tab("Explore"):
|
| 456 |
+
with gr.Row():
|
| 457 |
+
topic_dd = gr.Dropdown(
|
| 458 |
+
choices=["All"] + ALL_TOPICS,
|
| 459 |
+
value="All",
|
| 460 |
+
label="Topic"
|
| 461 |
+
)
|
| 462 |
+
split_dd = gr.Dropdown(
|
| 463 |
+
choices=["All"] + ALL_SPLITS,
|
| 464 |
+
value="All",
|
| 465 |
+
label="Split"
|
| 466 |
+
)
|
| 467 |
+
keyword_tb = gr.Textbox(
|
| 468 |
+
label="Keyword search",
|
| 469 |
+
placeholder="Search topic, question, or answer"
|
| 470 |
+
)
|
| 471 |
+
|
| 472 |
+
with gr.Row():
|
| 473 |
+
min_len = gr.Slider(0, int(max(DF["answer_len"].max(), 20)), value=0, step=1, label="Min answer length")
|
| 474 |
+
max_len = gr.Slider(0, int(max(DF["answer_len"].max(), 20)), value=int(DF["answer_len"].max()), step=1, label="Max answer length")
|
| 475 |
+
sort_by = gr.Dropdown(
|
| 476 |
+
choices=["ID", "Topic", "Question length", "Answer length", "Split"],
|
| 477 |
+
value="ID",
|
| 478 |
+
label="Sort by"
|
| 479 |
+
)
|
| 480 |
+
sort_dir = gr.Radio(
|
| 481 |
+
choices=["Ascending", "Descending"],
|
| 482 |
+
value="Ascending",
|
| 483 |
+
label="Order"
|
| 484 |
+
)
|
| 485 |
+
|
| 486 |
+
with gr.Row():
|
| 487 |
+
page_size = gr.Slider(5, 100, value=15, step=5, label="Rows per page")
|
| 488 |
+
page_number = gr.Slider(1, 1, value=1, step=1, label="Page")
|
| 489 |
+
run_btn = gr.Button("Apply filters", variant="primary")
|
| 490 |
+
export_btn = gr.Button("Export filtered CSV")
|
| 491 |
+
|
| 492 |
+
summary_md = gr.Markdown(value=compute_stats(DF))
|
| 493 |
+
table = gr.Dataframe(
|
| 494 |
+
headers=["id", "topic", "question", "answer", "split", "answer_len"],
|
| 495 |
+
wrap=True,
|
| 496 |
+
interactive=False,
|
| 497 |
+
label="Filtered results"
|
| 498 |
+
)
|
| 499 |
|
| 500 |
+
filtered_state = gr.State("")
|
| 501 |
+
row_slider = gr.Slider(1, 1, value=1, step=1, label="Inspect row on current page")
|
| 502 |
+
inspect_btn = gr.Button("Show row details")
|
| 503 |
+
|
| 504 |
+
detail_header = gr.Markdown(value="Select filters and click Apply.")
|
| 505 |
+
detail_topic = gr.Textbox(label="Topic", interactive=False)
|
| 506 |
+
detail_question = gr.Textbox(label="Question", lines=4, interactive=False)
|
| 507 |
+
detail_answer = gr.Textbox(label="Answer", lines=7, interactive=False)
|
| 508 |
+
detail_meta = gr.Textbox(label="Metadata", interactive=False)
|
| 509 |
+
csv_file = gr.File(label="Download CSV", interactive=False)
|
| 510 |
+
|
| 511 |
+
run_btn.click(
|
| 512 |
+
fn=run_explore,
|
| 513 |
+
inputs=[topic_dd, split_dd, keyword_tb, min_len, max_len, sort_by, sort_dir, page_size, page_number],
|
| 514 |
+
outputs=[summary_md, table, filtered_state, page_number, row_slider],
|
| 515 |
+
)
|
| 516 |
|
| 517 |
+
inspect_btn.click(
|
| 518 |
+
fn=show_row_detail,
|
| 519 |
+
inputs=[filtered_state, row_slider],
|
| 520 |
+
outputs=[detail_header, detail_topic, detail_question, detail_answer, detail_meta],
|
| 521 |
+
)
|
| 522 |
|
| 523 |
+
export_btn.click(
|
| 524 |
+
fn=export_filtered_csv,
|
| 525 |
+
inputs=[topic_dd, split_dd, keyword_tb, min_len, max_len, sort_by, sort_dir],
|
| 526 |
+
outputs=[csv_file],
|
| 527 |
+
)
|
| 528 |
|
| 529 |
+
with gr.Tab("Quiz"):
|
| 530 |
+
with gr.Row():
|
| 531 |
+
quiz_topic = gr.Dropdown(
|
| 532 |
+
choices=["All"] + ALL_TOPICS,
|
| 533 |
+
value="All",
|
| 534 |
+
label="Topic filter"
|
| 535 |
+
)
|
| 536 |
+
difficulty = gr.Radio(
|
| 537 |
+
choices=["Easy", "Medium", "Hard"],
|
| 538 |
+
value="Medium",
|
| 539 |
+
label="Difficulty"
|
| 540 |
+
)
|
| 541 |
+
start_btn = gr.Button("Start quiz", variant="primary")
|
| 542 |
+
reset_btn = gr.Button("Reset score")
|
| 543 |
+
|
| 544 |
+
quiz_score = gr.Markdown(value=score_text(0, 0, 0, 0))
|
| 545 |
+
quiz_status = gr.Textbox(label="Status", interactive=False)
|
| 546 |
+
|
| 547 |
+
question_box = gr.Textbox(label="Question", lines=5, interactive=False)
|
| 548 |
+
choices_radio = gr.Radio(choices=[], label="Choose one answer")
|
| 549 |
+
submit_btn = gr.Button("Submit and load next question", variant="primary")
|
| 550 |
+
|
| 551 |
+
result_box = gr.Textbox(label="Result", lines=6, interactive=False)
|
| 552 |
+
teaching_box = gr.Textbox(label="Teaching support", lines=8, interactive=False)
|
| 553 |
+
|
| 554 |
+
correct_state = gr.State("")
|
| 555 |
+
q_state = gr.State("")
|
| 556 |
+
topic_state = gr.State("")
|
| 557 |
+
|
| 558 |
+
correct_count_state = gr.State(0)
|
| 559 |
+
total_count_state = gr.State(0)
|
| 560 |
+
streak_state = gr.State(0)
|
| 561 |
+
best_streak_state = gr.State(0)
|
| 562 |
+
|
| 563 |
+
start_btn.click(
|
| 564 |
+
fn=start_quiz,
|
| 565 |
+
inputs=[
|
| 566 |
+
quiz_topic,
|
| 567 |
+
difficulty,
|
| 568 |
+
correct_count_state,
|
| 569 |
+
total_count_state,
|
| 570 |
+
streak_state,
|
| 571 |
+
best_streak_state,
|
| 572 |
+
],
|
| 573 |
+
outputs=[
|
| 574 |
+
question_box,
|
| 575 |
+
choices_radio,
|
| 576 |
+
correct_state,
|
| 577 |
+
q_state,
|
| 578 |
+
topic_state,
|
| 579 |
+
teaching_box,
|
| 580 |
+
quiz_score,
|
| 581 |
+
quiz_status,
|
| 582 |
+
],
|
| 583 |
+
)
|
| 584 |
|
| 585 |
+
submit_btn.click(
|
| 586 |
+
fn=submit_and_next,
|
| 587 |
+
inputs=[
|
| 588 |
+
choices_radio,
|
| 589 |
+
correct_state,
|
| 590 |
+
q_state,
|
| 591 |
+
topic_state,
|
| 592 |
+
quiz_topic,
|
| 593 |
+
difficulty,
|
| 594 |
+
correct_count_state,
|
| 595 |
+
total_count_state,
|
| 596 |
+
streak_state,
|
| 597 |
+
best_streak_state,
|
| 598 |
+
],
|
| 599 |
+
outputs=[
|
| 600 |
+
result_box,
|
| 601 |
+
question_box,
|
| 602 |
+
choices_radio,
|
| 603 |
+
correct_state,
|
| 604 |
+
q_state,
|
| 605 |
+
topic_state,
|
| 606 |
+
teaching_box,
|
| 607 |
+
quiz_score,
|
| 608 |
+
quiz_status,
|
| 609 |
+
correct_count_state,
|
| 610 |
+
total_count_state,
|
| 611 |
+
streak_state,
|
| 612 |
+
best_streak_state,
|
| 613 |
+
],
|
| 614 |
+
)
|
| 615 |
|
| 616 |
+
reset_btn.click(
|
| 617 |
+
fn=reset_score,
|
| 618 |
+
inputs=[],
|
| 619 |
+
outputs=[
|
| 620 |
+
correct_count_state,
|
| 621 |
+
total_count_state,
|
| 622 |
+
streak_state,
|
| 623 |
+
best_streak_state,
|
| 624 |
+
quiz_score,
|
| 625 |
+
quiz_status,
|
| 626 |
+
],
|
| 627 |
+
)
|
| 628 |
|
| 629 |
+
with gr.Tab("About"):
|
| 630 |
+
gr.Markdown(
|
| 631 |
+
"""
|
| 632 |
+
## About this teaching app
|
|
|
|
| 633 |
|
| 634 |
+
This Space demonstrates:
|
| 635 |
+
- Practical dataset exploration for bioinformatics QA data
|
| 636 |
+
- Teaching-mode multiple-choice practice with topic-aware distractors
|
| 637 |
+
- Session score tracking with streak metrics
|
|
|
|
| 638 |
|
| 639 |
+
## Important notice
|
|
|
|
|
|
|
|
|
|
|
|
|
| 640 |
|
| 641 |
+
This app is intended for learning and research use only.
|
| 642 |
+
Use with caution.
|
| 643 |
+
Do not use as a replacement for expert biomedical or clinical judgment.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 644 |
|
| 645 |
+
## Dataset
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 646 |
|
| 647 |
+
- Source: yashm/bioinformatics-qa-dataset
|
| 648 |
+
- Citation and DOI are listed in the project README
|
| 649 |
+
"""
|
| 650 |
+
)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 651 |
|
| 652 |
demo.launch()
|