yc1838
feat(agent): add open-ended research methodology
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import os
import sqlite3
import logging
import uuid
from contextlib import contextmanager
from pathlib import Path
from typing import List, Dict, Any, Optional, Union
from datetime import datetime
from langchain_core.messages import BaseMessage, HumanMessage
log = logging.getLogger(__name__)
# Constants
LILITH_HOME = Path(os.getenv("LILITH_HOME", ".lilith"))
MEMORY_DB_PATH = LILITH_HOME / "long_term_memory.sqlite"
MEMORY_CONTEXT_CHAR_BUDGET = 3000
MIN_MESSAGES_FOR_EXTRACTION = 2
MEMORY_LOG_PREVIEW_CHARS = 300
def _content_to_text(content: Any) -> str:
if content is None:
return ""
if isinstance(content, str):
return content
if isinstance(content, list):
parts = []
for item in content:
if isinstance(item, str):
parts.append(item)
elif isinstance(item, dict):
text = item.get("text")
if text is not None:
parts.append(str(text))
elif "content" in item:
nested = _content_to_text(item["content"])
if nested:
parts.append(nested)
else:
parts.append(str(item))
return "\n".join(part for part in parts if part)
return str(content)
def _memory_content_to_text(content: Any) -> str:
if hasattr(content, "content"):
return _content_to_text(content.content)
return _content_to_text(content)
def _preview_for_log(text: str, limit: int = MEMORY_LOG_PREVIEW_CHARS) -> str:
compact = " ".join(str(text).split())
if len(compact) <= limit:
return compact
return compact[: limit - 1] + "…"
def _print_memory_log(message: str, *args: Any) -> None:
text = message % args if args else message
print(text, flush=True)
class MemoryStore:
def __init__(self, db_path: Union[Path, str] = MEMORY_DB_PATH):
self._in_memory = (str(db_path) == ":memory:")
self.db_path = db_path if self._in_memory else Path(db_path)
self._mem_conn: Optional[sqlite3.Connection] = None
self._init_db()
def _connect(self) -> sqlite3.Connection:
if self._in_memory:
if self._mem_conn is None:
self._mem_conn = sqlite3.connect(":memory:", check_same_thread=False)
return self._mem_conn
return sqlite3.connect(str(self.db_path))
def close(self):
if self._mem_conn is not None:
self._mem_conn.close()
self._mem_conn = None
def _init_db(self):
if not self._in_memory:
Path(self.db_path).parent.mkdir(parents=True, exist_ok=True)
conn = self._connect()
with conn:
conn.execute("""
CREATE TABLE IF NOT EXISTS memories (
id TEXT PRIMARY KEY,
content TEXT NOT NULL,
type TEXT DEFAULT 'fact',
created_at TEXT NOT NULL,
updated_at TEXT NOT NULL
)
""")
conn.execute("""
CREATE TABLE IF NOT EXISTS episodes (
id TEXT PRIMARY KEY,
task TEXT NOT NULL,
summary TEXT NOT NULL,
outcome TEXT,
created_at TEXT NOT NULL
)
""")
if not self._in_memory:
conn.close()
def get_all_memories(self) -> List[Dict[str, Any]]:
conn = self._connect()
conn.row_factory = sqlite3.Row
cur = conn.cursor()
cur.execute("SELECT * FROM memories ORDER BY updated_at DESC")
rows = [dict(r) for r in cur.fetchall()]
if not self._in_memory:
conn.close()
return rows
def save_memories(self, memories: List[Dict[str, Any]], allow_empty: bool = False):
"""Replaces the memories table with the provided list (active compression)."""
if not memories:
existing = self.get_all_memories()
if existing and not allow_empty:
_print_memory_log("[memory] save_memories called with empty list while %d facts exist — refusing to wipe",
len(existing))
log.warning("[memory] save_memories called with empty list while %d facts exist — refusing to wipe",
len(existing))
return
conn = self._connect()
with conn:
conn.execute("DELETE FROM memories")
for m in memories:
now = datetime.now().isoformat()
created_at = m.get("created_at", now)
updated_at = m.get("updated_at", now)
conn.execute(
"INSERT INTO memories (id, content, type, created_at, updated_at) VALUES (?, ?, ?, ?, ?)",
(m.get("id", str(uuid.uuid4())), m["content"], m.get("type", "fact"), created_at, updated_at)
)
if not self._in_memory:
conn.close()
def delete_memory_prefix(self, prefix: str) -> int:
if not prefix:
return 0
matching_ids = [
row["id"]
for row in self.get_all_memories()
if row["id"].startswith(prefix)
]
if not matching_ids:
return 0
conn = self._connect()
with conn:
for memory_id in matching_ids:
conn.execute("DELETE FROM memories WHERE id = ?", (memory_id,))
if not self._in_memory:
conn.close()
return len(matching_ids)
def add_episode(self, task: str, summary: str, outcome: str):
conn = self._connect()
with conn:
now = datetime.now().isoformat()
conn.execute(
"INSERT INTO episodes (id, task, summary, outcome, created_at) VALUES (?, ?, ?, ?, ?)",
(str(uuid.uuid4()), task, summary, outcome, now)
)
if not self._in_memory:
conn.close()
def get_recent_episodes(self, limit: int = 3) -> List[Dict[str, Any]]:
conn = self._connect()
conn.row_factory = sqlite3.Row
cur = conn.cursor()
cur.execute("SELECT * FROM episodes ORDER BY created_at DESC LIMIT ?", (limit,))
rows = [dict(r) for r in cur.fetchall()]
if not self._in_memory:
conn.close()
return rows
_store = MemoryStore()
def _set_store(store: MemoryStore) -> MemoryStore:
"""Swap the module-level store and return the previous one."""
global _store
prev, _store = _store, store
return prev
@contextmanager
def ephemeral_memory(db_path: Union[str, Path] = ":memory:"):
"""Context manager that replaces the global _store with a fresh, isolated
MemoryStore for the duration of the block. On exit the store is closed and
the previous store is restored. Use db_path=':memory:' (default) for tests
or GAIA benchmarking where cross-contamination must be prevented.
Example::
with ephemeral_memory():
result = graph.invoke(state, config)
# any memory writes here are discarded on exit
"""
fresh = MemoryStore(db_path)
prev = _set_store(fresh)
try:
yield fresh
finally:
_set_store(prev)
fresh.close()
def _is_remove_doc(content: Any) -> bool:
return hasattr(content, "__repr_name__") and content.__repr_name__() == "RemoveDoc"
def extract_and_compress_facts(messages: List[BaseMessage], model) -> None:
"""
Extracts new facts and merges them with existing ones using langmem's manager.
Implements professional reflection and conflict resolution.
"""
from langmem import create_memory_manager
from langmem.knowledge.extraction import Memory
_print_memory_log("[memory] Running langmem memory management...")
log.info("[memory] Running langmem memory management...")
try:
# 1. Get existing memories from our local store
existing_rows = _store.get_all_memories()
existing_memories = [(m["id"], Memory(content=m["content"])) for m in existing_rows]
existing_by_content = {m["content"]: m for m in existing_rows}
existing_by_id = {m["id"]: m for m in existing_rows}
# 2. Initialize langmem manager (it's a Runnable)
# We use the default schema which is basically content strings
manager = create_memory_manager(model, enable_deletes=True)
# 3. Invoke manager with history and existing knowledge
# The manager will return the full updated list of memories
result = manager.invoke({
"messages": messages,
"existing": existing_memories
})
# 4. Save results back to our local persistent SQLite
if isinstance(result, list):
# The result is a list of ExtractedMemory objects or tuples depending on version
# Usually it's (id, content) or just objects. We'll be robust here.
updated_facts = []
removed_ids = set()
for item in result:
item_id = getattr(item, "id", None)
content = getattr(item, "content", None)
if isinstance(item, tuple):
if len(item) > 0:
item_id = item[0]
if len(item) > 1 and content is None:
content = item[1]
elif isinstance(item, dict):
item_id = item.get("id", item_id)
content = item.get("content", content)
stable_id = str(item_id) if item_id else None
if _is_remove_doc(content):
if stable_id:
removed_ids.add(stable_id)
continue
if content:
text = _memory_content_to_text(content)
existing = existing_by_id.get(stable_id) if stable_id else existing_by_content.get(text)
fact = {"content": text}
if stable_id:
fact["id"] = stable_id
elif existing:
fact["id"] = existing["id"]
if existing:
fact["created_at"] = existing["created_at"]
if existing["content"] == text:
fact["updated_at"] = existing["updated_at"]
if fact.get("id") not in removed_ids:
updated_facts.append(fact)
if updated_facts or removed_ids:
_store.save_memories(updated_facts, allow_empty=bool(removed_ids))
_print_memory_log("[memory] langmem updated store to %d facts.", len(updated_facts))
log.info("[memory] langmem updated store to %d facts.", len(updated_facts))
else:
_print_memory_log("[memory] langmem returned empty result — keeping existing facts")
log.info("[memory] langmem returned empty result — keeping existing facts")
summarize_episode(messages, model)
except Exception as exc:
_print_memory_log("[memory] langmem extraction failed: %s: %s", type(exc).__name__, exc)
log.exception("[memory] langmem extraction failed")
# Fallback to summarize episode if manager fails
summarize_episode(messages, model)
def summarize_episode(messages: List[BaseMessage], model) -> None:
"""Summarizes the trajectory to help avoid future mistakes."""
_print_memory_log("[memory] Summarizing task episode...")
log.info("[memory] Summarizing task episode...")
try:
initial_question = ""
outcome = "success"
for m in messages:
content = _content_to_text(m.content)
if isinstance(m, HumanMessage) and not initial_question:
initial_question = content
if "ERROR" in content.upper():
outcome = "failed/struggled"
prompt = f"""
Summarize this task trajectory for Lilith's 'Episodic Memory'.
Initial Question: {initial_question}
Outcome: {outcome}
Briefly explain:
1. What was the goal?
2. What tools worked? What failed?
3. What is the 'lesson learned' for next time?
Keep it under 150 words.
"""
response = model.invoke(prompt)
summary = _content_to_text(response.content)
_store.add_episode(initial_question, summary, outcome)
_print_memory_log(
"[memory] Episode saved: task=%r outcome=%r summary=%r",
_preview_for_log(initial_question),
outcome,
_preview_for_log(summary),
)
log.info(
"[memory] Episode saved: task=%r outcome=%r summary=%r",
_preview_for_log(initial_question),
outcome,
_preview_for_log(summary),
)
except Exception as exc:
_print_memory_log("[memory] Summarization failed: %s: %s", type(exc).__name__, exc)
log.exception("[memory] Summarization failed")
def _relevance_score(text: str, query_tokens: set) -> float:
"""Simple word-overlap score between a fact and the query (Jaccard-like)."""
if not query_tokens:
return 0.0
fact_tokens = set(text.lower().split())
return len(fact_tokens & query_tokens) / (len(fact_tokens | query_tokens) or 1)
def retrieve_relevant_context(query: str, char_budget: int = MEMORY_CONTEXT_CHAR_BUDGET) -> str:
"""Fetches facts and recent episodes ranked by relevance, capped by char_budget.
If truncated, appends a note instructing the agent to call search_memory for more."""
try:
query_tokens = set(query.lower().split())
facts = _store.get_all_memories()
episodes = _store.get_recent_episodes(limit=5)
facts.sort(key=lambda m: _relevance_score(m["content"], query_tokens), reverse=True)
context_parts = []
budget_remaining = char_budget
if facts:
included, total = [], len(facts)
for m in facts:
line = f"- {m['content']}"
if budget_remaining - len(line) - 1 > 0:
included.append(line)
budget_remaining -= len(line) + 1
else:
break
fact_block = "<known_facts>\n" + "\n".join(included) + "\n</known_facts>"
omitted = total - len(included)
if omitted:
fact_block += f"\n<!-- {omitted} fact(s) omitted (budget). Call search_memory(query) to retrieve more. -->"
context_parts.append(fact_block)
if episodes and budget_remaining > 0:
included_ep = []
for e in episodes:
line = f"Task: {e['task']}\nSummary: {e['summary']}"
if budget_remaining - len(line) - 2 > 0:
included_ep.append(line)
budget_remaining -= len(line) + 2
else:
break
if included_ep:
ep_block = "<past_experiences>\n" + "\n\n".join(included_ep) + "\n</past_experiences>"
omitted_ep = len(episodes) - len(included_ep)
if omitted_ep:
ep_block += f"\n<!-- {omitted_ep} episode(s) omitted. Call search_memory(query) for more. -->"
context_parts.append(ep_block)
return "\n\n".join(context_parts)
except Exception as exc:
_print_memory_log("[memory] Retrieval failed: %s: %s", type(exc).__name__, exc)
log.exception("[memory] Retrieval failed")
return ""
def search_memory_store(query: str, max_results: int = 10) -> str:
"""Keyword search across all facts and episodes. Called by the agent when
the system-prompt injection was truncated or the query needs deeper lookup."""
try:
query_tokens = set(query.lower().split())
facts = _store.get_all_memories()
episodes = _store.get_recent_episodes(limit=50)
scored_facts = sorted(
[(f, _relevance_score(f["content"], query_tokens)) for f in facts],
key=lambda x: x[1], reverse=True
)
scored_eps = sorted(
[(e, _relevance_score(e["task"] + " " + e["summary"], query_tokens)) for e in episodes],
key=lambda x: x[1], reverse=True
)
results = []
for m, score in scored_facts[:max_results]:
if score > 0:
results.append((score, f"[fact] {m['content']}"))
for e, score in scored_eps[:max_results]:
if score > 0:
results.append((score, f"[episode] Task: {e['task']}\n Summary: {e['summary']}"))
results.sort(key=lambda x: x[0], reverse=True)
parts = [text for _, text in results[:max_results]]
if not parts:
return "No matching memories found."
return "\n\n".join(parts)
except Exception as exc:
_print_memory_log("[memory] search_memory_store failed: %s: %s", type(exc).__name__, exc)
log.exception("[memory] search_memory_store failed")
return "Memory search failed."