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Running
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"""Callbacks connecting UI events to the LangGraph pipeline."""
import json
import logging
import os
import numpy as np
from PIL import Image
from agents.graph import stream_pipeline
from config import DEMO_CASES_DIR, ENABLE_MEDASR
# ZeroGPU support: use @spaces.GPU when running on HF Spaces, no-op locally
try:
import spaces
SPACES_AVAILABLE = True
except ImportError:
SPACES_AVAILABLE = False
def gpu_decorator(duration: int = 180):
"""Decorator that uses @spaces.GPU on HF Spaces, no-op locally."""
def decorator(fn):
if SPACES_AVAILABLE:
return spaces.GPU(duration=duration)(fn)
return fn
return decorator
logger = logging.getLogger(__name__)
# Agent display info
AGENT_INFO = {
"diagnostician": ("Diagnostician", "Analyzing image independently..."),
"bias_detector": ("Bias Detector", "Scanning for cognitive biases..."),
"devil_advocate": ("Devil's Advocate", "Challenging the diagnosis..."),
"consultant": ("Consultant", "Synthesizing consultation report..."),
}
# Demo case definitions — based on published case reports and clinical literature.
# References:
# Case 1: PMC3195099 (AP CXR vs CT in trauma pneumothorax detection)
# Case 2: PMC6203039 (Acute aortic dissection: a missed diagnosis)
# Case 3: PMC10683049 (PE masked by symptoms of mental disorders)
DEMO_CASES = {
"Case 1: Missed Pneumothorax": {
"diagnosis": "Left rib contusion with musculoskeletal chest wall pain",
"context": (
"32-year-old male, presented to ED after a motorcycle collision at ~40 mph. "
"Helmet worn, no LOC. Chief complaint: left-sided chest pain worse with deep "
"inspiration.\n\n"
"Vitals: HR 104 bpm, BP 132/84 mmHg, RR 22/min, SpO2 96% on room air, "
"Temp 37.1 C.\n\n"
"Exam: Tenderness over left 4th-6th ribs, no crepitus, no subcutaneous "
"emphysema palpated. Breath sounds reportedly equal bilaterally (noisy ED). "
"Mild dyspnea attributed to pain.\n\n"
"Labs: WBC 11.2, Hgb 14.1, Lactate 1.8 mmol/L.\n\n"
"ED physician ordered AP chest X-ray (supine) — read as 'no acute "
"cardiopulmonary abnormality, possible left rib fracture.' Patient was given "
"ibuprofen and discharged with rib fracture precautions."
),
"image_file": "case1_pneumothorax.png",
"modality": "CXR",
},
"Case 2: Aortic Dissection": {
"diagnosis": "Acute gastroesophageal reflux / esophageal spasm",
"context": (
"58-year-old male with a 15-year history of hypertension (poorly controlled, "
"non-compliant with amlodipine). Presented to ED with sudden-onset severe "
"retrosternal chest pain radiating to the interscapular back region, starting "
"30 minutes ago.\n\n"
"Vitals: BP 178/102 mmHg (right arm), 146/88 mmHg (left arm), HR 92 bpm, "
"RR 20/min, SpO2 97%, Temp 37.0 C.\n\n"
"Exam: Diaphoretic, visibly distressed. Abdomen soft, mild epigastric "
"tenderness. Heart sounds normal, no murmur. Peripheral pulses intact but "
"radial pulse asymmetry noted.\n\n"
"Labs: Troponin I <0.01 (negative x2 at 0h and 3h), D-dimer 4,850 ng/mL "
"(markedly elevated), WBC 13.4, Creatinine 1.3.\n\n"
"ECG: Sinus tachycardia, nonspecific ST changes. Initial CXR ordered. "
"ED physician considered ACS (ruled out by troponin), then attributed symptoms "
"to acid reflux; prescribed IV pantoprazole and GI cocktail. Pain not relieved."
),
"image_file": "case2_aortic_dissection.png",
"modality": "CXR",
},
"Case 3: Pulmonary Embolism": {
"diagnosis": "Postpartum anxiety with hyperventilation syndrome",
"context": (
"29-year-old female, G2P2, day 5 after emergency cesarean section (prolonged "
"labor, general anesthesia). Presented with acute onset dyspnea and chest "
"tightness at rest. Reports feeling of 'impending doom' and inability to catch "
"breath.\n\n"
"Vitals: HR 118 bpm, BP 108/72 mmHg, RR 28/min, SpO2 91% on room air "
"(improved to 95% on 4L NC), Temp 37.3 C.\n\n"
"Exam: Anxious-appearing, tachypneic. Lungs clear to auscultation. Mild "
"right-sided pleuritic chest pain. Right calf tenderness and mild swelling "
"noted but attributed to post-surgical immobility. No Homan sign.\n\n"
"Labs: D-dimer 3,200 ng/mL (elevated, but 'expected postpartum'), "
"WBC 10.8, Hgb 10.2, ABG on RA: pH 7.48, pO2 68 mmHg, pCO2 29 mmHg.\n\n"
"OB team attributed symptoms to postpartum anxiety, prescribed lorazepam "
"0.5 mg PRN. Psychiatry consult requested. No CTPA ordered initially."
),
"image_file": "case3_pulmonary_embolism.png",
"modality": "CXR",
},
}
@gpu_decorator(duration=900)
def analyze_streaming(image: Image.Image | None, diagnosis: str, context: str, modality: str):
"""
Generator: run pipeline and yield single HTML output after each agent step.
Each agent's output appears inline below its progress header.
Uses @spaces.GPU on HF Spaces for ZeroGPU support.
"""
if image is None:
yield '<div class="pipeline-error">Please upload a medical image.</div>'
return
if not diagnosis.strip():
yield '<div class="pipeline-error">Please enter the doctor\'s working diagnosis.</div>'
return
if not context.strip():
context = "No additional clinical context provided."
if not isinstance(modality, str) or not modality.strip():
modality = "CXR"
completed = {}
agent_outputs = {}
all_agents = ["diagnostician", "bias_detector", "devil_advocate", "consultant"]
try:
yield _build_pipeline(all_agents, completed, agent_outputs, active="diagnostician")
accumulated_state = {}
for node_name, state_update in stream_pipeline(image, diagnosis.strip(), context.strip(), modality.strip()):
completed[node_name] = True
accumulated_state.update(state_update)
if state_update.get("error"):
agent_outputs[node_name] = f'<div class="pipeline-error">{_esc(state_update.get("error"))}</div>'
yield _build_pipeline(all_agents, completed, agent_outputs, error=node_name)
return
# Generate this agent's HTML output
agent_outputs[node_name] = _format_agent_output(node_name, accumulated_state)
idx = all_agents.index(node_name) if node_name in all_agents else -1
next_active = all_agents[idx + 1] if idx + 1 < len(all_agents) else None
yield _build_pipeline(all_agents, completed, agent_outputs, active=next_active)
except Exception as e:
logger.exception("Pipeline failed")
yield f'<div class="pipeline-error">Pipeline error: {_esc(e)}</div>'
def _build_pipeline(all_agents, completed, agent_outputs, active=None, error=None) -> str:
"""Build combined progress + inline output HTML."""
from ui.components import _build_progress_html
return _build_progress_html(
completed=list(completed.keys()),
active=active,
error=error,
agent_outputs=agent_outputs,
)
def _format_agent_output(agent_id: str, state: dict) -> str:
"""Generate HTML content for a specific agent's output."""
if agent_id == "diagnostician":
return _format_diagnostician(state)
elif agent_id == "bias_detector":
return _format_bias_detector(state)
elif agent_id == "devil_advocate":
return _format_devil_advocate(state)
elif agent_id == "consultant":
return _format_consultant(state)
return ""
def _esc(text: object) -> str:
"""Escape HTML special characters."""
return str(text).replace("&", "&").replace("<", "<").replace(">", ">")
def _format_diagnostician(state: dict) -> str:
diag = state.get("diagnostician_output") or {}
parts = []
# Structured findings
findings_list = diag.get("findings_list", [])
if findings_list:
items = []
for f in findings_list:
if isinstance(f, dict):
name = _esc(f.get("finding", ""))
desc = _esc(f.get("description", ""))
source = f.get("source", "").strip().lower()
source_tag = ""
if source in ("imaging", "clinical", "both"):
source_tag = f' <span class="source-tag source-{source}">{_esc(source)}</span>'
line = f"<li><strong>{name}</strong>{source_tag}: {desc}</li>" if desc else f"<li>{name}{source_tag}</li>"
items.append(line)
else:
items.append(f"<li>{_esc(str(f))}</li>")
parts.append(f'<div class="findings-section"><strong>Findings</strong><ul>{"".join(items)}</ul></div>')
# Differential diagnoses
differentials = diag.get("differential_diagnoses", [])
if differentials:
items = []
for d in differentials:
if isinstance(d, dict):
name = _esc(d.get("diagnosis", ""))
reason = _esc(d.get("reasoning", ""))
items.append(f"<li><strong>{name}</strong>: {reason}</li>" if reason else f"<li>{name}</li>")
else:
items.append(f"<li>{_esc(str(d))}</li>")
parts.append(f'<div class="differentials-section"><strong>Differential Diagnoses</strong><ol>{"".join(items)}</ol></div>')
# Fallback: raw text if no structured data
if not parts:
raw = diag.get("findings", "")
if raw:
parts.append(f'<div class="agent-text">{_esc(raw).replace(chr(10), "<br>")}</div>')
return "".join(parts)
def _format_bias_detector(state: dict) -> str:
bias_out = state.get("bias_detector_output") or {}
parts = []
# Discrepancy summary (always show if present)
disc = bias_out.get("discrepancy_summary", "")
if disc:
parts.append(f'<div class="discrepancy-summary">{_esc(disc)}</div>')
# Biases
biases = bias_out.get("identified_biases", [])
for b in biases:
severity = b.get("severity", "").strip().lower()
bias_type = _esc(b.get("type", "Unknown"))
evidence = _esc(b.get("evidence", ""))
source = b.get("source", "").strip().lower()
if severity in ("low", "medium", "high"):
sev_tag = f'<span class="severity-tag severity-{severity}">{severity.upper()}</span>'
else:
sev_tag = ""
if source in ("doctor", "ai", "both"):
src_tag = f'<span class="source-tag source-{source}">{source.upper()}</span>'
else:
src_tag = ""
parts.append(
f'<div class="bias-item">'
f'<div class="bias-title">{sev_tag} {src_tag} {bias_type}</div>'
f'<div class="bias-evidence">{evidence}</div>'
f'</div>'
)
# Missed findings
missed = bias_out.get("missed_findings", [])
if missed:
items = "".join(f"<li>{_esc(f)}</li>" for f in missed)
parts.append(f'<div class="missed-findings"><strong>Missed Findings</strong><ul>{items}</ul></div>')
# SigLIP sign verification
sign_results = bias_out.get("consistency_check", [])
if isinstance(sign_results, list) and sign_results:
meaningful = [r for r in sign_results if r.get("confidence") != "inconclusive"]
if meaningful:
items = []
for r in meaningful:
conf = r.get("confidence", "?")
sign = _esc(r.get("sign", "?"))
css_cls = "sign-present" if "present" in conf else "sign-absent"
items.append(f'<li class="{css_cls}"><strong>{sign}</strong> — {conf}</li>')
parts.append(
f'<div class="siglip-section">'
f'<strong>Image Verification (MedSigLIP)</strong>'
f'<ul>{"".join(items)}</ul>'
f'</div>'
)
return "".join(parts)
def _format_devil_advocate(state: dict) -> str:
da_out = state.get("devils_advocate_output") or {}
parts = []
# Must-not-miss
mnm = da_out.get("must_not_miss", [])
for m in mnm:
dx = _esc(m.get("diagnosis", "?"))
why = _esc(m.get("why_dangerous", ""))
signs = _esc(m.get("supporting_signs", ""))
test = _esc(m.get("rule_out_test", ""))
details = ""
if why:
details += f"<li><strong>Why dangerous:</strong> {why}</li>"
if signs:
details += f"<li><strong>Supporting signs:</strong> {signs}</li>"
if test:
details += f"<li><strong>Rule-out test:</strong> {test}</li>"
parts.append(
f'<div class="mnm-item">'
f'<div class="mnm-title">{dx}</div>'
f'<ul>{details}</ul>'
f'</div>'
)
# Challenges
challenges = da_out.get("challenges", [])
if challenges:
for c in challenges:
claim = _esc(c.get("claim", ""))
counter = _esc(c.get("counter_evidence", ""))
parts.append(
f'<div class="challenge-item">'
f'<div class="challenge-claim">{claim}</div>'
f'<div class="challenge-counter">{counter}</div>'
f'</div>'
)
# Recommended workup
workup = da_out.get("recommended_workup", [])
if workup:
items = "".join(f"<li>{_esc(str(w))}</li>" for w in workup)
parts.append(f'<div class="workup-section"><strong>Recommended Workup</strong><ul>{items}</ul></div>')
# Fallback: ensure non-empty so the collapsible block can expand
if not parts:
parts.append('<div class="agent-text">No structured challenges parsed.</div>')
return "".join(parts)
def _format_consultant(state: dict) -> str:
ref = state.get("consultant_output") or {}
da_out = state.get("devils_advocate_output") or {}
parts = []
# Consultation note — the main human-readable report
note = ref.get("consultation_note", "")
if note:
paragraphs = _esc(note).split("\n")
formatted = "".join(f"<p>{p.strip()}</p>" for p in paragraphs if p.strip())
parts.append(f'<div class="consultation-note">{formatted}</div>')
# Alternative diagnoses to consider
alt_raw = ref.get("alternative_diagnoses", "")
if alt_raw:
try:
alts = json.loads(alt_raw) if isinstance(alt_raw, str) else alt_raw
if not isinstance(alts, list):
alts = []
if alts:
items = []
for a in alts:
urgency_raw = str(a.get("urgency", "")).strip().lower()
urgency = urgency_raw if urgency_raw in {"critical", "high", "moderate"} else "moderate"
urgency_label = urgency.upper()
dx = _esc(a.get("diagnosis", "?"))
ev = _esc(a.get("evidence", ""))
ns = _esc(a.get("next_step", ""))
detail = f" — {ev}" if ev else ""
step = f"<br><em>Next step: {ns}</em>" if ns else ""
items.append(
f'<li><span class="urgency-tag urgency-{urgency}">{urgency_label}</span> '
f"<strong>{dx}</strong>{detail}{step}</li>"
)
parts.append(f'<div class="alt-diagnoses"><strong>Consider</strong><ul>{"".join(items)}</ul></div>')
except (json.JSONDecodeError, TypeError):
pass
# Immediate actions (merged from Devil's Advocate + Consultant)
workup = da_out.get("recommended_workup", []) if isinstance(da_out, dict) else []
actions = ref.get("immediate_actions", [])
safe_workup = [str(x).strip() for x in workup if str(x).strip()]
safe_actions = [str(x).strip() for x in actions if str(x).strip()]
all_items = list(dict.fromkeys(safe_workup + safe_actions))
if all_items:
items = "".join(f"<li>{_esc(item)}</li>" for item in all_items)
parts.append(f'<div class="next-steps"><strong>Recommended Actions</strong><ul>{items}</ul></div>')
# Confidence note
if ref.get("confidence_note"):
parts.append(f'<div class="confidence-note"><em>{_esc(ref["confidence_note"])}</em></div>')
return "".join(parts)
@gpu_decorator(duration=60)
def transcribe_audio(audio, existing_context: str = ""):
"""
Transcribe audio input using MedASR.
Generator that yields (context_text, status_html) for streaming UI feedback.
Appends transcribed text to any existing context.
Uses @spaces.GPU on HF Spaces for ZeroGPU support.
"""
def _status_html(cls: str, text: str) -> str:
return f'<div class="voice-status {cls}">{text}</div>'
if audio is None:
yield existing_context, _status_html("voice-idle", "No audio recorded. Click the microphone to start.")
return
if not ENABLE_MEDASR:
yield existing_context, _status_html("voice-error", "MedASR is disabled (set ENABLE_MEDASR=true)")
return
# Step 1: Show processing state
sr, audio_data = audio
duration = len(audio_data) / sr if sr > 0 else 0
yield existing_context, _status_html(
"voice-processing",
f'<span class="pulse-dot"></span> Transcribing {duration:.1f}s of audio with MedASR...'
)
try:
from models import medasr_client
# Convert to float32 mono
if audio_data.dtype != np.float32:
if np.issubdtype(audio_data.dtype, np.integer):
audio_data = audio_data.astype(np.float32) / np.iinfo(audio_data.dtype).max
else:
audio_data = audio_data.astype(np.float32)
if audio_data.ndim > 1:
audio_data = audio_data.mean(axis=1)
# Resample to 16kHz if needed (MedASR expects 16000Hz)
target_sr = 16000
if sr != target_sr:
from scipy.signal import resample
num_samples = int(len(audio_data) * target_sr / sr)
audio_data = resample(audio_data, num_samples).astype(np.float32)
sr = target_sr
# Step 2: Run transcription
text = medasr_client.transcribe(audio_data, sampling_rate=sr)
if not text.strip():
yield existing_context, _status_html("voice-error", "No speech detected. Please try again.")
return
# Step 3: Append to existing context
if existing_context.strip():
new_context = existing_context.rstrip() + "\n\n" + text
else:
new_context = text
word_count = len(text.split())
yield new_context, _status_html(
"voice-success",
f'✓ Transcribed {word_count} words ({duration:.1f}s) — text added to context above'
)
except Exception as e:
logger.exception("MedASR transcription failed")
yield existing_context, _status_html("voice-error", f"Transcription failed: {e}")
def load_demo(demo_name: str | None):
"""Load a demo case into the UI inputs."""
if demo_name is None or demo_name not in DEMO_CASES:
return None, "", "", "CXR"
case = DEMO_CASES[demo_name]
image_path = os.path.join(DEMO_CASES_DIR, case["image_file"])
image = None
if os.path.exists(image_path):
image = Image.open(image_path)
else:
logger.warning("Demo image not found: %s", image_path)
modality = case.get("modality") or "CXR"
return image, case["diagnosis"], case["context"], modality
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