Update view_consultation.py
Browse files- view_consultation.py +19 -58
view_consultation.py
CHANGED
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@@ -17,25 +17,6 @@ def format_field_as_string(data):
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for item in data])
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return str(data)
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def expand_field_to_table(field_data, columns):
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"""Expand the formatted string back into a DataFrame."""
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if not field_data:
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return pd.DataFrame(columns=columns)
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rows = [item.split(" (") for item in field_data.split("; ")]
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formatted_rows = []
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for row in rows:
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if len(columns) == 4: # Prescription
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drug_name = row[0]
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frequency, quantity = row[1].replace(")", "").split(" - ")
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formatted_rows.append([len(formatted_rows) + 1, drug_name, frequency, quantity])
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else: # Lab Investigations
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test_name = row[0]
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department = row[1].replace(")", "")
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formatted_rows.append([len(formatted_rows) + 1, test_name, department])
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return pd.DataFrame(formatted_rows, columns=columns)
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def get_consultation_details(patient_id):
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"""Retrieve consultation details for a given Patient ID."""
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columns = ["Consultation ID", "Patient ID", "Patient Name", "Height", "Weight",
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@@ -50,7 +31,7 @@ def get_consultation_details(patient_id):
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# Ensure all required columns are present
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missing_cols = [col for col in columns if col not in df.columns]
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if missing_cols:
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return f"Error: Missing columns in consultation data: {', '.join(missing_cols)}"
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# Convert Patient ID to numeric
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df["Patient ID"] = pd.to_numeric(df["Patient ID"], errors='coerce')
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@@ -59,7 +40,7 @@ def get_consultation_details(patient_id):
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consultation = df[df["Patient ID"] == patient_id]
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if consultation.empty:
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return f"No consultation records found for Patient ID: {patient_id}."
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# Rename columns for display purposes
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consultation = consultation.rename(columns={"Height": "Height (cms)", "Weight": "Weight (kgs)"})
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@@ -68,30 +49,24 @@ def get_consultation_details(patient_id):
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consultation["Prescription"] = consultation["Prescription"].apply(format_field_as_string)
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consultation["Lab Investigations"] = consultation["Lab Investigations"].apply(format_field_as_string)
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details = consultation.
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prescription_table = expand_field_to_table(details.get("Prescription", ""), ["Row Number", "Drug Name", "Frequency", "Quantity"])
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lab_table = expand_field_to_table(details.get("Lab Investigations", ""), ["Row Number", "Test Name", "Department"])
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# Remove Prescription and Lab Investigations from the general info table
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general_info = {key: value for key, value in details.items() if key not in ["Prescription", "Lab Investigations"]}
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return general_info, prescription_table, lab_table
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except pd.errors.ParserError as e:
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return f"Error reading CSV file: {e}"
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except Exception as e:
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return f"Unexpected error occurred: {e}"
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else:
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return "Consultation data file does not exist."
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def view_consultations(patient_id):
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details
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if details:
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return general_info, prescription_table, lab_table
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else:
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def gradio_interface():
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"""Create Gradio interface for viewing consultation details."""
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consultations_output = gr.Dataframe(
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headers=["Consultation ID", "Patient ID", "Patient Name", "Height (cms)", "Weight (kgs)",
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"Diastolic BP", "Systolic BP", "Temperature", "Chief Complaints",
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"Revisit Date", "Revisit Time"],
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row_count=
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col_count=
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)
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prescription_output = gr.Dataframe(
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headers=["Row Number", "Drug Name", "Frequency", "Quantity"],
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row_count=10,
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col_count=4
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)
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lab_output = gr.Dataframe(
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headers=["Row Number", "Test Name", "Department"],
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row_count=10,
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col_count=3
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)
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def update_consultation_view(patient_id):
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general_info, prescription_table, lab_table = view_consultations(patient_id)
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return general_info, prescription_table, lab_table
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patient_id_input.change(
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fn=
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inputs=patient_id_input,
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outputs=
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)
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return demo
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@@ -134,4 +95,4 @@ def gradio_interface():
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# Run the Gradio app
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if __name__ == "__main__":
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interface = gradio_interface()
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interface.launch()
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for item in data])
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return str(data)
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def get_consultation_details(patient_id):
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"""Retrieve consultation details for a given Patient ID."""
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columns = ["Consultation ID", "Patient ID", "Patient Name", "Height", "Weight",
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# Ensure all required columns are present
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missing_cols = [col for col in columns if col not in df.columns]
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if missing_cols:
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return f"Error: Missing columns in consultation data: {', '.join(missing_cols)}"
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# Convert Patient ID to numeric
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df["Patient ID"] = pd.to_numeric(df["Patient ID"], errors='coerce')
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consultation = df[df["Patient ID"] == patient_id]
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if consultation.empty:
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return f"No consultation records found for Patient ID: {patient_id}."
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# Rename columns for display purposes
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consultation = consultation.rename(columns={"Height": "Height (cms)", "Weight": "Weight (kgs)"})
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consultation["Prescription"] = consultation["Prescription"].apply(format_field_as_string)
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consultation["Lab Investigations"] = consultation["Lab Investigations"].apply(format_field_as_string)
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details = consultation.to_dict(orient="records")
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print("Details:", details) # Debugging line
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return details
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except pd.errors.ParserError as e:
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return f"Error reading CSV file: {e}"
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except Exception as e:
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return f"Unexpected error occurred: {e}"
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else:
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return "Consultation data file does not exist."
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def view_consultations(patient_id):
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details = get_consultation_details(patient_id)
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if isinstance(details, list) and details:
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return pd.DataFrame(details)
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else:
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print("View Consultation Error:", details) # Debugging line
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return pd.DataFrame(columns=["Message"], data=[[details]])
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def gradio_interface():
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"""Create Gradio interface for viewing consultation details."""
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consultations_output = gr.Dataframe(
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headers=["Consultation ID", "Patient ID", "Patient Name", "Height (cms)", "Weight (kgs)",
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"Diastolic BP", "Systolic BP", "Temperature", "Chief Complaints",
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"Prescription", "Lab Investigations", "Revisit Date", "Revisit Time"],
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row_count=10,
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col_count=13
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)
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patient_id_input.change(
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fn=view_consultations,
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inputs=patient_id_input,
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outputs=consultations_output
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)
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return demo
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# Run the Gradio app
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if __name__ == "__main__":
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interface = gradio_interface()
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interface.launch()
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