Spaces:
Sleeping
Sleeping
Create app.py
Browse files
app.py
ADDED
|
@@ -0,0 +1,161 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import streamlit as st
|
| 2 |
+
import pandas as pd
|
| 3 |
+
import random
|
| 4 |
+
import joblib
|
| 5 |
+
from sklearn.ensemble import RandomForestClassifier
|
| 6 |
+
from sklearn.preprocessing import StandardScaler
|
| 7 |
+
from sklearn.model_selection import train_test_split
|
| 8 |
+
from sklearn.metrics import classification_report
|
| 9 |
+
import matplotlib.pyplot as plt
|
| 10 |
+
import seaborn as sns
|
| 11 |
+
import numpy as np
|
| 12 |
+
import os
|
| 13 |
+
|
| 14 |
+
# Load cattle data
|
| 15 |
+
DATA_FILE = 'cattle_data.csv'
|
| 16 |
+
|
| 17 |
+
def load_data():
|
| 18 |
+
# Check if the dataset exists
|
| 19 |
+
if os.path.exists(DATA_FILE):
|
| 20 |
+
return pd.read_csv(DATA_FILE)
|
| 21 |
+
else:
|
| 22 |
+
return pd.DataFrame(columns=['TAG ID', 'BREED', 'AGE', 'SURGERY', 'REPRODUCTION CYCLES', 'OTHER'])
|
| 23 |
+
|
| 24 |
+
# Function to generate random sensor data for a specific cow breed
|
| 25 |
+
def generate_sensor_data(cow_breed):
|
| 26 |
+
cow_data = {
|
| 27 |
+
'Holstein Friesian': {'body_temp': (38.0, 39.0), 'rumination': (600, 800), 'steps': (8000, 12000), 'behavior_score': (6, 8)},
|
| 28 |
+
'Girolando': {'body_temp': (38.0, 39.0), 'rumination': (650, 750), 'steps': (7000, 10000), 'behavior_score': (7, 9)},
|
| 29 |
+
'Jersey': {'body_temp': (38.0, 39.0), 'rumination': (650, 750), 'steps': (7500, 10500), 'behavior_score': (6, 8)},
|
| 30 |
+
'Sahiwal': {'body_temp': (38.0, 39.0), 'rumination': (550, 700), 'steps': (6500, 9000), 'behavior_score': (7, 9)},
|
| 31 |
+
'Kankrej': {'body_temp': (38.0, 39.0), 'rumination': (600, 750), 'steps': (7000, 10000), 'behavior_score': (7, 9)}
|
| 32 |
+
}
|
| 33 |
+
|
| 34 |
+
data = cow_data.get(cow_breed)
|
| 35 |
+
if not data:
|
| 36 |
+
return None
|
| 37 |
+
|
| 38 |
+
sensor_data = {
|
| 39 |
+
'Body Temperature (°C)': round(random.uniform(data['body_temp'][0], data['body_temp'][1]), 2),
|
| 40 |
+
'Rumination (min/day)': random.randint(data['rumination'][0], data['rumination'][1]),
|
| 41 |
+
'Step Count (steps/day)': random.randint(data['steps'][0], data['steps'][1]),
|
| 42 |
+
'Behavior Score (1-10)': random.randint(data['behavior_score'][0], data['behavior_score'][1])
|
| 43 |
+
}
|
| 44 |
+
return sensor_data
|
| 45 |
+
|
| 46 |
+
# Load the data and preprocess
|
| 47 |
+
df = load_data()
|
| 48 |
+
|
| 49 |
+
# Feature Engineering - Create features like daily trends or differences if needed
|
| 50 |
+
df['milk_yield_change'] = df['AGE'].diff().fillna(0) # Just an example to create a derived feature
|
| 51 |
+
|
| 52 |
+
# Merge sensor data with cattle profile
|
| 53 |
+
cow_breeds = ['Holstein Friesian', 'Girolando', 'Jersey', 'Sahiwal', 'Kankrej']
|
| 54 |
+
sensor_data_list = []
|
| 55 |
+
for breed in cow_breeds:
|
| 56 |
+
sensor_data = generate_sensor_data(breed)
|
| 57 |
+
if sensor_data:
|
| 58 |
+
sensor_data['TAG ID'] = random.randint(1, 100) # Random TAG ID for simulation
|
| 59 |
+
sensor_data['BREED'] = breed
|
| 60 |
+
sensor_data_list.append(sensor_data)
|
| 61 |
+
|
| 62 |
+
sensor_df = pd.DataFrame(sensor_data_list)
|
| 63 |
+
|
| 64 |
+
# Merge with the original cattle profile dataset
|
| 65 |
+
df = pd.merge(df, sensor_df, on='TAG ID', how='left')
|
| 66 |
+
|
| 67 |
+
# Model Training (Disease Prediction)
|
| 68 |
+
X = df[['Body Temperature (°C)', 'Rumination (min/day)', 'Step Count (steps/day)', 'Behavior Score (1-10)', 'AGE']]
|
| 69 |
+
y = df['OTHER'].apply(lambda x: 1 if x == 'Healthy' else 0) # Convert health status to binary (0 = not healthy, 1 = healthy)
|
| 70 |
+
|
| 71 |
+
# Data Preprocessing
|
| 72 |
+
scaler = StandardScaler()
|
| 73 |
+
X_scaled = scaler.fit_transform(X)
|
| 74 |
+
|
| 75 |
+
# Train Test Split
|
| 76 |
+
X_train, X_test, y_train, y_test = train_test_split(X_scaled, y, test_size=0.3, random_state=42)
|
| 77 |
+
|
| 78 |
+
# Train a Random Forest Classifier
|
| 79 |
+
model = RandomForestClassifier(n_estimators=100, random_state=42)
|
| 80 |
+
model.fit(X_train, y_train)
|
| 81 |
+
|
| 82 |
+
# Save the trained model
|
| 83 |
+
joblib.dump(model, 'disease_prediction_model.pkl')
|
| 84 |
+
joblib.dump(scaler, 'scaler.pkl')
|
| 85 |
+
|
| 86 |
+
# Evaluate the model
|
| 87 |
+
y_pred = model.predict(X_test)
|
| 88 |
+
st.write("Model Evaluation Results")
|
| 89 |
+
st.text(classification_report(y_test, y_pred))
|
| 90 |
+
|
| 91 |
+
# Streamlit App
|
| 92 |
+
st.title('Cattle Profile & Disease Prediction Dashboard')
|
| 93 |
+
|
| 94 |
+
# Register New Cow form
|
| 95 |
+
st.header("➕ Register New Cow")
|
| 96 |
+
tag_id = st.number_input("TAG ID", min_value=1, step=1)
|
| 97 |
+
breed = st.selectbox("Breed", cow_breeds)
|
| 98 |
+
age = st.number_input("Age (in years)", min_value=0, step=1)
|
| 99 |
+
surgery = st.text_input("Surgery")
|
| 100 |
+
reproduction_cycles = st.number_input("Reproduction Cycles", min_value=0, step=1)
|
| 101 |
+
other = st.text_input("Other Health Details")
|
| 102 |
+
|
| 103 |
+
submit = st.button("Register Cow")
|
| 104 |
+
if submit:
|
| 105 |
+
new_cow = pd.DataFrame([{
|
| 106 |
+
'TAG ID': tag_id,
|
| 107 |
+
'BREED': breed,
|
| 108 |
+
'AGE': age,
|
| 109 |
+
'SURGERY': surgery,
|
| 110 |
+
'REPRODUCTION CYCLES': reproduction_cycles,
|
| 111 |
+
'OTHER': other
|
| 112 |
+
}])
|
| 113 |
+
df = pd.concat([df, new_cow], ignore_index=True)
|
| 114 |
+
st.write("Cow registered successfully!")
|
| 115 |
+
|
| 116 |
+
# Select RFID dropdown to view details
|
| 117 |
+
st.header("🔢 Select RFID Tag ID")
|
| 118 |
+
selected_rfid = st.selectbox("Select RFID Tag ID", df['TAG ID'].unique())
|
| 119 |
+
|
| 120 |
+
if selected_rfid:
|
| 121 |
+
cow_info = df[df['TAG ID'] == selected_rfid].iloc[0]
|
| 122 |
+
st.write(f"**TAG ID:** {cow_info['TAG ID']}")
|
| 123 |
+
st.write(f"**BREED:** {cow_info['BREED']}")
|
| 124 |
+
st.write(f"**AGE:** {cow_info['AGE']} years")
|
| 125 |
+
st.write(f"**SURGERY:** {cow_info['SURGERY']}")
|
| 126 |
+
st.write(f"**REPRODUCTION CYCLES:** {cow_info['REPRODUCTION CYCLES']}")
|
| 127 |
+
st.write(f"**OTHER HEALTH DETAILS:** {cow_info['OTHER']}")
|
| 128 |
+
|
| 129 |
+
# Predict disease status based on the selected cow's data
|
| 130 |
+
selected_data = scaler.transform([[
|
| 131 |
+
cow_info['Body Temperature (°C)'],
|
| 132 |
+
cow_info['Rumination (min/day)'],
|
| 133 |
+
cow_info['Step Count (steps/day)'],
|
| 134 |
+
cow_info['Behavior Score (1-10)'],
|
| 135 |
+
cow_info['AGE']
|
| 136 |
+
]])
|
| 137 |
+
disease_prediction = model.predict(selected_data)
|
| 138 |
+
disease_status = "Healthy" if disease_prediction[0] == 1 else "Not Healthy"
|
| 139 |
+
st.write(f"Predicted Health Status: {disease_status}")
|
| 140 |
+
|
| 141 |
+
# Display cow milk yield trends
|
| 142 |
+
st.header("🐄 Cow Milk Yield Trends")
|
| 143 |
+
milk_data = {
|
| 144 |
+
'Tag ID': df['TAG ID'],
|
| 145 |
+
'Date': pd.date_range(start='2025-04-01', periods=len(df), freq='D'),
|
| 146 |
+
'Milk Yield (L)': np.random.uniform(10, 22, len(df)),
|
| 147 |
+
}
|
| 148 |
+
milk_df = pd.DataFrame(milk_data)
|
| 149 |
+
|
| 150 |
+
# Plot trends
|
| 151 |
+
st.subheader('Milk Yield Trend for Each Cow')
|
| 152 |
+
plt.figure(figsize=(10, 6))
|
| 153 |
+
sns.lineplot(data=milk_df, x='Date', y='Milk Yield (L)', hue='Tag ID', marker='o')
|
| 154 |
+
plt.title('Milk Yield Trend (Day-wise for Each Cow)')
|
| 155 |
+
plt.xlabel('Date')
|
| 156 |
+
plt.ylabel('Milk Yield (L)')
|
| 157 |
+
plt.xticks(rotation=45)
|
| 158 |
+
st.pyplot()
|
| 159 |
+
|
| 160 |
+
# Save updated data back to CSV
|
| 161 |
+
df.to_csv(DATA_FILE, index=False)
|