File size: 835 Bytes
e657e99 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 | {
"quality_control": {
"methods": [],
"parameters": {}
},
"spike_removal": {
"enabled": false,
"parameters": {}
},
"smoothing": {
"methods": ["savitzky-golay"],
"parameters": {
"differentiation_order": 0,
"polynomial_order": 5,
"window_size": 11
}
},
"baseline": {
"methods": ["polyfit"],
"parameters": {
"poly_order_fingerprint": 1,
"poly_order_others": 6
}
},
"truncation": {
"enabled": false,
"parameters": {}
},
"normalization": {
"method": "ch",
"parameters": {}
},
"dim_reduction": {
"methods": ["pca"],
"parameters": {
"pca": {
"n_pc": 2
}
}
},
"phenotype": {
"methods": ["kmeans"],
"parameters": {
"kmeans": {
"k": 4,
"n_pc": 10
}
}
}
}
|