{
  "quality_control": {
    "methods": [],
    "parameters": {}
  },
  "spike_removal": {
    "enabled": false,
    "parameters": {}
  },
  "smoothing": {
    "methods": ["savitzky-golay"],
    "parameters": {
      "differentiation_order": 0,
      "polynomial_order": 5,
      "window_size": 11
    }
  },
  "baseline": {
    "methods": ["polyfit"],
    "parameters": {
      "poly_order_fingerprint": 1,
      "poly_order_others": 6
    }
  },
  "truncation": {
    "enabled": false,
    "parameters": {}
  },
  "normalization": {
    "method": "ch",
    "parameters": {}
  },
  "dim_reduction": {
    "methods": ["pca"],
    "parameters": {
      "pca": {
        "n_pc": 2
      }
    }
  },
  "phenotype": {
    "methods": ["kmeans"],
    "parameters": {
      "kmeans": {
        "k": 4,
        "n_pc": 10
      }
    }
  }
}