app

func_gradio.py

@@ -5,7 +5,7 @@ from util import check_region,predict_microc,predict_cage,predict_epis,filetobro
 from scipy.sparse import load_npz
 import matplotlib.pyplot as plt
 from matplotlib.gridspec import GridSpec
-
+import matplotlib
 def predict_func(input_chrom,cop_type, region_start,region_end, atac_seq):
     device = torch.device('cuda:0' if torch.cuda.is_available() else 'cpu')
     print(device)
@@ -60,7 +60,6 @@ def predict_func(input_chrom,cop_type, region_start,region_end, atac_seq):
 
 
 def make_plots(in_file,md,epis,epi_type, maxv1, maxv2,maxv3):
-    import matplotlib
     matplotlib.use("Agg")
     # matplotlib.pyplot.switch_backend('Agg')
     if in_file is None:

util.py

@@ -248,11 +248,9 @@ def predict_microc(
 
 
 def filetobrowser(out_epis,out_cages,out_cop,chrom,start,end,file_id):
-    import uuid
     with open('data/epigenomes.txt', 'r') as f:
         epigenomes = f.read().splitlines()
 
-    # filename = str(uuid.uuid4())
     files_to_zip = file_id
     if os.path.exists(files_to_zip):
         shutil.rmtree(files_to_zip)