Spaces:
Sleeping
Sleeping
Upload 2 files
Browse files
model/low_energy/checkpoints/config.yaml
ADDED
|
@@ -0,0 +1,34 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
batch_size: 1500
|
| 2 |
+
epochs: 5000
|
| 3 |
+
eval_every_n_epochs: 5
|
| 4 |
+
smilesmodel_finetune: False
|
| 5 |
+
smilesmodel_finetune_path: "/public/home/hpc212307003/molclr_cnn/nist_w2v/pretrained_gin/checkpoints/model.pth"
|
| 6 |
+
fine_tune_from: "/home/xieting/graph_transformer_esa/runs/Oct13_09-58-09_ubuntu/"
|
| 7 |
+
log_every_n_steps: 2
|
| 8 |
+
learning_rate: 1e-05
|
| 9 |
+
weight_decay: 0.0001
|
| 10 |
+
fp16_precision: True
|
| 11 |
+
truncation: True
|
| 12 |
+
|
| 13 |
+
model_config:
|
| 14 |
+
num_layer: 5
|
| 15 |
+
emb_dim: 300
|
| 16 |
+
feat_dim: 512
|
| 17 |
+
drop_ratio: 0.3
|
| 18 |
+
pool : mean
|
| 19 |
+
spec_embed_dim: 256
|
| 20 |
+
dropout: 0.1
|
| 21 |
+
layers: 3
|
| 22 |
+
embed_dim: 256
|
| 23 |
+
|
| 24 |
+
dataset:
|
| 25 |
+
s: 1
|
| 26 |
+
num_workers: 0
|
| 27 |
+
valid_size: 0.1
|
| 28 |
+
ms2_file: "/home/xieting/cl_data/hcd3_0.01test/train_hcd_posh_10.mgf"
|
| 29 |
+
smi_file: "/home/xieting/cl_data/hcd3_0.01test/train_hcd_posh_10_smi.npy"
|
| 30 |
+
|
| 31 |
+
loss:
|
| 32 |
+
temperature: 0.1
|
| 33 |
+
use_cosine_similarity: True
|
| 34 |
+
alpha_weight: 0.75
|
model/low_energy/checkpoints/model.pth
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:7fd4397b415acb07cb772fa990d8498500fb70b4e213218503fb1d201f4bcc9a
|
| 3 |
+
size 21327230
|