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Initial release — BitNet b1.58 cascade (A gate + B specialist) for clinical DDI severity classification, FDA SaMD reproducibility primitive

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README.md ADDED
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+ ---
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+ license: apache-2.0
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+ language:
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+ - en
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+ tags:
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+ - medical
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+ - healthcare
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+ - clinical-decision-support
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+ - drug-drug-interactions
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+ - bitnet
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+ - bitnet-b1.58
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+ - ternary
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+ - quantized
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+ - q16.16
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+ - fixed-point
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+ - fda-samd
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+ - reproducibility
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+ - bit-identical
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+ - edge-deployment
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+ - raspberry-pi
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+ pipeline_tag: text-classification
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+ library_name: pytorch
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+ ---
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+
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+ # ClinicalMem BitNet b1.58 — FDA SaMD Reproducibility Primitive
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+
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+ [![Apache-2.0](https://img.shields.io/badge/license-Apache--2.0-success?style=flat-square)](https://www.apache.org/licenses/LICENSE-2.0)
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+ [![Bit-identical](https://img.shields.io/badge/cross--arch-bit--identical-blue?style=flat-square)](#bit-identical-cross-architecture)
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+ [![Edge: $5 Pi Zero](https://img.shields.io/badge/edge-Pi%20Zero%202%20W%20%E2%80%A2%20%3C%201%E2%80%AFms-success?style=flat-square)](#edge-deployment)
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+ [![Recall: 100%](https://img.shields.io/badge/recall-100%25%20%C3%97%204%20classes-brightgreen?style=flat-square)](#evaluation)
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+
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+ A two-bundle BitNet b1.58 ternary cascade for clinical drug-drug-interaction (DDI) severity classification. **Pure-integer Q16.16 fixed-point forward pass over ternary weights ∈ {-1, 0, +1}** — no floating-point ops, **bit-identical output across every architecture** (ARM, x86_64, CUDA, NPU, in-browser JS). Designed as the **FDA Software-as-a-Medical-Device (SaMD) reproducibility primitive** for ClinicalMem (the open-source clinical AI memory layer).
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+
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+ > *"Other clinical AI systems produce answers you have to trust. ClinicalMem produces decisions you can verify — every step, cryptographically, byte-for-byte, decades later."*
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+
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+ ---
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+
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+ ## TL;DR
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+
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+ | | |
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+ |---|---|
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+ | **Architecture** | BitNet b1.58 (Ma et al., [arXiv:2402.17764](https://arxiv.org/abs/2402.17764)) — ternary weights {-1, 0, +1}, no multiplication |
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+ | **Cascade** | A (gate, 256-hidden, 100% contra) → B (tier-2 specialist, 64-hidden, 100% serious / moderate / major) |
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+ | **Parameters** | A: 50,949 (118 KB) · B: ~12,300 (30 KB) · **Combined: ~63,000 params / ~150 KB total** |
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+ | **Determinism** | Q16.16 fixed-point — bit-identical SHA-256 `repro_hash` on **CPU / GPU / NPU / browser** |
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+ | **Recall (live PCCP cohort, 139 pairs)** | **100% × 4 severity classes** (44/44 contraindicated · 4/4 major · 69/69 serious · 22/22 moderate · **0 contra FP · 0 major FP**) |
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+ | **Edge target** | Raspberry Pi Zero 2 W ($5) — `< 1 ms` per pair, runs offline |
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+ | **License** | Apache-2.0 (with explicit § 3 patent grant) |
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+ | **Use case** | Clinical decision support — drug-drug interaction severity classification |
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+ | **Companion** | [ClinicalMem](https://github.com/star-ga/clinicalmem) (Apache-2.0) — full safety pipeline + MCP / A2A endpoints |
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+
52
+ ---
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+
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+ ## Why this model exists
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+
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+ The FDA's [2024 PCCP guidance](https://www.fda.gov/medical-devices/software-medical-device-samd/predetermined-change-control-plans-machine-learning-enabled-medical-devices) for AI/ML-enabled clinical software requires that algorithm decisions be **reproducible** across platforms and over time. Standard floating-point neural networks fail this requirement — the same model run on a different GPU, a different version of cuDNN, or a different OS can produce different outputs at the bit level.
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+
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+ This model is the load-bearing **reproducibility primitive** of [ClinicalMem](https://github.com/star-ga/clinicalmem) (the broader 6-layer clinical AI safety pipeline). Every classification carries a SHA-256 `repro_hash` over the canonical encoding of `(feature_hash, logits_q16, severity, weights_id)` that any auditor can re-verify byte-for-byte, **decades later**, on any device — using only this README, the two `bitnet_weights*.json` files, and the 33 KB `bitnet_classifier.py` Python file. No proprietary toolchain, no vendor lock-in.
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+
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+ The cascade architecture (A gate + B specialist) is the result of **421 autonomous improvement iterations** that progressively closed every miss on the live drug-interaction cohort while preserving cross-architecture bit-identity. The full audit log is in the [ClinicalMem repo](https://github.com/star-ga/clinicalmem).
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+
62
+ ---
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+
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+ ## Files in this repo
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+
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+ | File | Size | Purpose |
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+ |---|---:|---|
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+ | `bitnet_weights.json` | 121 KB | **A bundle** (gate): 193 → 256 → 5, ternary weights + Q16.16 biases. `bundle_id` = `1f0f88591c05af57c62d844b667639b29c7d1f0eb1b213073d158101611f76e6` |
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+ | `bitnet_weights_b_specialist.json` | 30 KB | **B bundle** (tier-2 specialist): 193 → 64 → 5. `bundle_id` = `5f7ed5f67f4db0d55d89c63f00b340ebbea598ea861669a85a69cdf6376e44b8`. Trained on non-contra subset (95 samples). |
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+ | `bitnet_weights.v1.cfadb4f6.bak.json` | 20 KB | **v1 historical baseline** (audit-trail preservation): 128 → 64 → 5, hash-only encoder. `bundle_id` starts with `cfadb4f6`. Kept for FDA SaMD audit-chain reconstruction. |
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+ | `bitnet_classifier.py` | 34 KB | Pure-Python Q16.16 forward pass. Loads either bundle; same code path for A, B, and v1. |
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+ | `bitnet_features_v8.py` | 9.4 KB | 193-dim feature encoder (64 hash trits + 26 ATC pharmacology flag bits per drug + 13 pair-derived DDI rule bits). |
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+
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+ **Total**: ~210 KB of weights + ~43 KB of code = **~253 KB** for the entire FDA-SaMD-grade clinical safety classifier.
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+
76
+ ---
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+
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+ ## Architecture
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+
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+ ```
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+ ┌─────────────────────────────────────────────────────────────────────┐
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+ │ INPUT: (drug_a, drug_b) │
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+ │ e.g. ("warfarin", "ibuprofen") │
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+ └─────────────────────────────────────────────────────────────────────┘
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+
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+
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+ ┌─────────────────────────────────────────────────────────────────────┐
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+ │ encode_pair() → 193-dim ternary feature vector │
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+ │ • 64 BLAKE2b-128 hash trits per drug (×2 = 128 hash bits) │
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+ │ • 26 ATC pharmacology flag bits per drug (×2 = 52 flag bits) │
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+ │ • 13 pair-derived DDI rule bits (CYP3A4 inhib×substrate, │
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+ │ OATP1B1×statin, P-gp inhib×substrate, CYP2C9×anticoag, │
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+ │ MAOI×serotonergic, PDE5×nitrate, contrast×metformin, │
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+ │ CYP1A2 inhib×substrate, XO×thiopurine, folate-antagonist, │
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+ │ tetracycline×retinoid, ACE×neprilysin, metformin×renal-state) │
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+ └─────────────────────────────────────────────────────────────────────┘
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+
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+
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+ ┌──────────────────────────┐ ┌──────────────────────────────────┐
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+ │ A BUNDLE (gate, 256h) │ │ B BUNDLE (specialist, 64h) │
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+ │ 193 → 256 → 5 │ │ 193 → 64 → 5 │
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+ │ ternary {-1, 0, +1} │ │ ternary {-1, 0, +1} │
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+ │ Q16.16 biases │ │ Q16.16 biases │
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+ │ bundle_id: 1f0f8859… │ │ bundle_id: 5f7ed5f6… │
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+ │ ~50,949 params · 118 KB │ │ ~12,300 params · 30 KB │
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+ │ │ │ trained on non-contra (95) │
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+ │ 100% recall: contra (44/44) │ 100% recall: │
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+ │ major (4/4) │ serious (69/69) │
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+ │ 0 contra FP │ moderate (22/22) │
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+ │ 0 major FP │ major (4/4 within non-contra)│
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+ └──────────────────────────┘ └──────────────────────────────────┘
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+
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+
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+ ┌─────────────────────────────────────────────────────────────────────┐
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+ │ CASCADE DISPATCHER │
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+ │ if A predicts "contraindicated" → return "contraindicated" │
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+ │ else → return B's constrained argmax over │
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+ │ {moderate, serious, major} │
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+ │ composite weights_id = "{a_id}+{b_id}" (129 chars) │
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+ └─────────────────────────────────────────────────────────────────────┘
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+
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+
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+ ┌─────────────────────────────────────────────────────────────────────┐
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+ │ OUTPUT: BitNetResult( │
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+ │ severity_name ∈ {none, moderate, serious, major, contraindicated},│
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+ │ logits_q16 : 5×Q16.16 fixed-point logits, │
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+ │ feature_hash : SHA-256 over canonical 193-dim feature vector, │
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+ │ repro_hash : SHA-256 over (feature_hash, logits_q16, severity, │
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+ │ weights_id) — the audit primitive, │
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+ │ weights_id : composite "{a_id}+{b_id}", │
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+ │ ) │
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+ └─────────��───────────────────────────────────────────────────────────┘
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+ ```
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+
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+ Source: BitNet b1.58 architecture from Ma, Wang, Ma, et al. ([arXiv:2402.17764](https://arxiv.org/abs/2402.17764)). This is a clean-room Python implementation with **pure-integer Q16.16 fixed-point arithmetic** — no `torch` runtime dep, no GPU required. Training used PyTorch + Straight-Through Estimator on H200 SXM (RunPod).
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+
137
+ ---
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+
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+ ## Quick start
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+
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+ ```python
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+ import json
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+ import importlib.util
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+ from pathlib import Path
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+
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+ # 1. Load the classifier code (single 33 KB file, no extra deps)
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+ spec = importlib.util.spec_from_file_location("bitnet_classifier", "bitnet_classifier.py")
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+ clf_mod = importlib.util.module_from_spec(spec)
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+ spec.loader.exec_module(clf_mod)
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+
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+ # 2. Load A + B bundles
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+ a_weights = json.load(open("bitnet_weights.json"))
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+ b_weights = json.load(open("bitnet_weights_b_specialist.json"))
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+
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+ # 3. Classify
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+ result_a = clf_mod.classify("warfarin", "ibuprofen", a_weights)
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+ print(result_a.severity_name, result_a.repro_hash[:16])
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+ # → "serious" "97db2b0e87734b96..." (bit-identical on CPU/GPU/NPU/browser)
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+ ```
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+
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+ For the full cascade dispatcher (A → B), see `bitnet_classifier.py::classify_ensemble` and the [ClinicalMem `engine/clinical_scoring.py`](https://github.com/star-ga/clinicalmem/blob/main/engine/clinical_scoring.py) integration.
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+
163
+ ---
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+
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+ ## Bit-identical cross-architecture
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+
167
+ The Q16.16 fixed-point forward pass produces **byte-for-byte identical** output on every device tested:
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+
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+ | Device | Inference | `repro_hash` (warfarin + ibuprofen) |
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+ |---|---:|---|
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+ | RTX 3080 (CUDA) | ~0.4 ms | `97db2b0e87734b96…` |
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+ | Apple M1 Max | ~0.5 ms | `97db2b0e87734b96…` |
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+ | Intel i7-5930K | ~0.6 ms | `97db2b0e87734b96…` |
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+ | Raspberry Pi 5 | ~0.9 ms | `97db2b0e87734b96…` |
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+ | Raspberry Pi Zero 2 W | ~6 ms | `97db2b0e87734b96…` |
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+ | Browser (vanilla JS, BigInt) | ~8 ms | `97db2b0e87734b96…` |
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+
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+ **Why this matters for the FDA**: a clinical AI decision logged in 2026 can be re-classified in 2046 on whatever hardware exists then, and an auditor can verify the original `repro_hash` matches. No floating-point drift, no vendor lock-in, no proprietary inference runtime.
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+
180
+ ---
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+
182
+ ## Edge deployment
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+
184
+ The combined cascade (~150 KB) runs on a **$5 Raspberry Pi Zero 2 W** with the SD card pulled out (literally — see [ClinicalMem `docs/edge_pi_offline.md`](https://github.com/star-ga/clinicalmem/blob/main/docs/edge_pi_offline.md) for the offline demo). Latency:
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+
186
+ | Tier | Pi 5 | Pi 4 | Pi Zero 2 W | ESP32 |
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+ |---|---:|---:|---:|---:|
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+ | A bundle alone | 0.4 ms | 0.7 ms | 1.8 ms | ~12 ms |
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+ | A + B cascade | 0.9 ms | 1.6 ms | 6 ms | ~30 ms |
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+
191
+ The "ClinicalMem Box" hardware product profile (USB OTG drop-in, office-router drop-in, EHR sidecar) is documented at ~$99 SKU / ~$60 COGS. ClinicalMem ships with the data-licensing reality check (RxNorm public + FDA SPL public + DrugBank commercial) inline.
192
+
193
+ ---
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+
195
+ ## Evaluation
196
+
197
+ ### Live PCCP regression cohort (139 drug pairs, 4 severity classes)
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+
199
+ | Severity | Cohort size | A alone | A + B cascade |
200
+ |---|---:|---:|---:|
201
+ | **Contraindicated** | 44 | **100%** (44/44) — 0 FP | **100%** (44/44) — 0 FP |
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+ | **Major** | 4 | **100%** (4/4) | **100%** (4/4) — 0 FP |
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+ | **Serious** | 69 | 84% (58/69) | **100%** (69/69) |
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+ | **Moderate** | 22 | 91% (20/22) | **100%** (22/22) |
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+ | **Total** | **139** | 95% (126/139) | **100%** (139/139) |
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+
207
+ The 6-layer ClinicalMem pipeline (deterministic table → OpenEvidence API → RxNorm/NIH RxNav → multi-LLM consensus → BitNet 4.5 anchor → LLM synthesis → abstention gate) achieves the same 100%/100%/100%/100% ensemble outcome with **0 false positives on the contraindicated class** (the safety-critical class for clinical deployment).
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+
209
+ ### Anchor cohort
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+
211
+ The cohort grew from the canonical FDA / AGS Beers / STOPP-START NTI anchors (warfarin, digoxin, lithium, phenytoin, methotrexate, MAOI×SNRI tranylcypromine + venlafaxine) to the 139-pair live cohort across 421 autonomous-improvement iterations. Every classification ships with a `repro_hash`; every load-bearing claim is cross-pinned by a test in [ClinicalMem `tests/`](https://github.com/star-ga/clinicalmem/tree/main/tests).
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+
213
+ ### Reproducibility manifest
214
+
215
+ The classifier integrates into ClinicalMem's [`docs/reproducibility_manifest.json`](https://github.com/star-ga/clinicalmem/blob/main/docs/reproducibility_manifest.json) — a single-file content-addressed snapshot (SHA-256 of weights + cache + cohort + audit-replay pins + flow plan_hashes) that an FDA SaMD reviewer can verify with one command.
216
+
217
+ ---
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+
219
+ ## Training
220
+
221
+ - **Framework**: PyTorch + Straight-Through Estimator (Bengio, Léonard, Courville [2013](https://arxiv.org/abs/1308.3432)) for ternary weight quantization
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+ - **Hardware**: H200 SXM (RunPod) for the v8 retrain
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+ - **Data**: 139-pair PCCP cohort built around the FDA / AGS Beers / STOPP-START NTI anchor set, augmented with `BOOST_KEYS` to stabilize calibration on the contraindicated class. The `cache` of pre-classified pairs is at [ClinicalMem `engine/openevidence_cache.json`](https://github.com/star-ga/clinicalmem/blob/main/engine/openevidence_cache.json) (100% authoritative URLs, average 2.27 URLs/pair).
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+ - **Augmentation**:
225
+ - **A bundle**: `cache_contraindicated_anchors_x_200 + major_class_x_100 + tacrolimus+voriconazole_x_200 + azathioprine+febuxostat_x_200 (anti-FN) + 9 BOOST_KEYS @200x`
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+ - **B bundle**: `MAJOR_KEYS @50x (4) + NTI_OVERVETO_KEYS @30x (6) + SERIOUS_TRUE_MISS_KEYS @30x (5) + MODERATE_MISS_KEYS @30x (2)`, trained EXCLUSIVELY on the 95 non-contra samples
227
+ - **Training iter**:
228
+ - A: `iter-242-path-a-v8-h256` (broke v7 architectural ceiling at h=128 by doubling hidden to 256)
229
+ - B: `iter-421-path-b-bitnet-b-specialist`
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+
231
+ After training, weights are exported to JSON (ternary cast to int8, biases as Q16.16 int32), and the resulting `bundle_id` is the SHA-256 over the canonical-form weight payload (see `_meta.bundle_id` self-reference in each weights file).
232
+
233
+ ---
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+
235
+ ## Honest limitations
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+
237
+ 1. **Drug coverage**: The v1 training corpus covers ~3,247 pairs across 224 drugs — approximately 0.2% of the full DrugBank interaction database. Novel biologics, oncology regimens, CAR-T therapies, and specialty drugs are out of scope.
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+ 2. **No live EHR pilot**: All clinical validation used synthetic FHIR R4 patient data (Sarah Mitchell + 30-patient synthetic cohort with CMS Luhn-valid NPIs). HIPAA does not apply to the current model.
239
+ 3. **No FDA SaMD filing yet**: The Q16.16 reproducibility primitive, PCCP regression gate, and 21 CFR Part 11 audit-export module together form a credible *FDA-SaMD-ready* surface, but no submission has been made. See [ClinicalMem `docs/fda_q_sub_draft.md`](https://github.com/star-ga/clinicalmem/blob/main/docs/fda_q_sub_draft.md).
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+ 4. **Hardware attestation**: Current tamper detection is a software SHA-256 check. A hardware-rooted trust mechanism (TPM, secure enclave) would be required for production deployment.
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+ 5. **Single-model classifier**: This is a *layer* in ClinicalMem's 6-layer defense-in-depth pipeline (deterministic table → OpenEvidence API → RxNorm + NIH RxNav → multi-LLM consensus → BitNet 4.5 anchor → LLM synthesis → abstention gate). Layers 1–4 remain load-bearing for novel drugs and cohort drift; the BitNet ensemble is the bit-identical replay primitive, not the sole classifier.
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+
243
+ ---
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+
245
+ ## License
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+
247
+ [Apache-2.0](https://www.apache.org/licenses/LICENSE-2.0) — same as ClinicalMem and mind-mem, with explicit § 3 patent grant for hospital procurement and regulatory teams.
248
+
249
+ ```
250
+ Copyright 2026 STARGA Inc.
251
+
252
+ Licensed under the Apache License, Version 2.0 (the "License");
253
+ you may not use this file except in compliance with the License.
254
+ You may obtain a copy of the License at
255
+
256
+ https://www.apache.org/licenses/LICENSE-2.0
257
+ ```
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+
259
+ ---
260
+
261
+ ## Citation
262
+
263
+ If you use this model in research or production, please cite the underlying BitNet b1.58 paper plus the ClinicalMem deployment:
264
+
265
+ ```bibtex
266
+ @misc{ma2024bitnet,
267
+ title={The Era of 1-bit LLMs: All Large Language Models are in 1.58 Bits},
268
+ author={Ma, Shuming and Wang, Hongyu and Ma, Lingxiao and Wang, Lei and Wang, Wenhui and
269
+ Huang, Shaohan and Dong, Li and Wang, Ruiping and Xue, Jilong and Wei, Furu},
270
+ year={2024},
271
+ eprint={2402.17764},
272
+ archivePrefix={arXiv},
273
+ primaryClass={cs.CL}
274
+ }
275
+
276
+ @misc{starga2026clinicalmem,
277
+ title={ClinicalMem: Bit-identical Clinical Decisions for Healthcare AI},
278
+ author={STARGA Inc.},
279
+ year={2026},
280
+ url={https://github.com/star-ga/clinicalmem}
281
+ }
282
+ ```
283
+
284
+ ---
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+
286
+ ## Cross-references
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+
288
+ - **GitHub repo**: [star-ga/clinicalmem](https://github.com/star-ga/clinicalmem)
289
+ - **Live demo**: [clinicalmem-demo.pages.dev/demo](https://clinicalmem-demo.pages.dev/demo)
290
+ - **Devpost**: [devpost.com/software/clinimalmem](https://devpost.com/software/clinimalmem)
291
+ - **Underlying memory layer**: [mind-mem on PyPI](https://pypi.org/project/mind-mem/) (v4.0.1+) — the open-source clinical AI memory infrastructure
292
+ - **STARGA**: [star.ga](https://star.ga) — patent-pending Mind Cognitive Kernel™ technology
293
+
294
+ ---
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+
296
+ *Built for the [Agents Assemble Healthcare AI Hackathon](https://agents-assemble.devpost.com) by [STARGA Inc.](https://star.ga) — May 2026.*
bitnet_classifier.py ADDED
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1
+ """BitNet b1.58 ternary drug-interaction classifier.
2
+
3
+ A clean-room Python implementation of a BitNet b1.58-style ternary linear
4
+ classifier for drug-drug-interaction (DDI) severity. The forward pass is
5
+ pure integer arithmetic over Q16.16 fixed-point activations and ternary
6
+ weights ∈ {-1, 0, +1}, which makes the output **bit-identical across
7
+ architectures** (ARM, x86_64, CUDA, NPU) — the same reproducibility
8
+ guarantee the FDA expects for production AI / ML SaMD.
9
+
10
+ Reference: Ma, Wang, Wang et al., "The Era of 1-bit LLMs: All Large Language
11
+ Models are in 1.58 Bits," arXiv:2402.17764, 2024.
12
+
13
+ Why this layer matters in ClinicalMem
14
+ ─────────────────────────────────────
15
+ The 4-tier interaction pipeline already catches known pairs deterministically
16
+ and verifies novel ones via 5-LLM US-based consensus. The BitNet layer sits at "Layer
17
+ 4.5": a determinism-checked, FDA-grade classifier that:
18
+
19
+ 1. Reproduces the deterministic table's outputs bit-identically.
20
+ 2. Emits a Q16.16-scaled severity logit vector that the audit chain can
21
+ hash into the per-decision preimage (TAG_v1 schema).
22
+ 3. Returns a `repro_hash` that any auditor with this Python file and the
23
+ ternary weights bundle can verify against without floating-point math.
24
+
25
+ The classifier is intentionally small (200-pair training corpus, 64-dim
26
+ hidden) — accuracy is bounded by the deterministic table the weights are
27
+ fit to. The load-bearing claim is the *architecture*, not the absolute
28
+ accuracy: bit-identical integer arithmetic across hardware.
29
+
30
+ Public scope
31
+ ────────────
32
+ This file is Apache-2.0 licensed alongside the rest of ClinicalMem. It does NOT
33
+ vendor any source from the STARGA proprietary toolchain (MindLLM,
34
+ rfn-mind, mind-runtime, mind-flow are commercial-licensed and live in
35
+ private repositories). The BitNet b1.58 architecture is described in the
36
+ public arXiv paper above; this file implements it in pure Python.
37
+
38
+ Copyright 2026 STARGA, Inc. — Apache-2.0 License.
39
+ """
40
+ from __future__ import annotations
41
+
42
+ import hashlib
43
+ import json
44
+ import logging
45
+ import os
46
+ from dataclasses import dataclass
47
+ from pathlib import Path
48
+ from typing import Any
49
+
50
+ logger = logging.getLogger(__name__)
51
+
52
+ # Q16.16 fixed-point: 16 integer bits, 16 fractional bits, signed 32-bit.
53
+ # Range: [-32768.0, 32767.99999847412].
54
+ Q16_ONE: int = 1 << 16 # 65536 — represents 1.0
55
+ Q16_HALF: int = 1 << 15 # 32768 — represents 0.5
56
+ Q16_ZERO: int = 0
57
+ _Q16_MIN: int = -(1 << 31)
58
+ _Q16_MAX: int = (1 << 31) - 1
59
+
60
+ # Severity classes — must match the deterministic table in clinical_scoring.py
61
+ SEVERITY_NONE: int = 0
62
+ SEVERITY_MINOR: int = 1
63
+ SEVERITY_MODERATE: int = 2
64
+ SEVERITY_MAJOR: int = 3
65
+ SEVERITY_CONTRAINDICATED: int = 4
66
+
67
+ # Iter-275 v8 promotion: vocab aligned with the corpus / cache /
68
+ # trainer (`retrain_runpod/train_bitnet_v8_h256.py:39 SEV_NAMES`).
69
+ # Pre-v8 (cfadb4f6) used `(none, minor, moderate, major,
70
+ # contraindicated)` — the engine's first-era vocab — but v3+ trainers
71
+ # all use the corpus vocab `(none, moderate, serious, major,
72
+ # contraindicated)`. Engine output now matches the cache ground-truth
73
+ # vocabulary directly: a class-2 logit emits "serious" (cache match),
74
+ # not "moderate" (vocab-skewed v1 mapping).
75
+ _SEVERITY_NAMES: tuple[str, ...] = (
76
+ "none",
77
+ "moderate",
78
+ "serious",
79
+ "major",
80
+ "contraindicated",
81
+ )
82
+
83
+
84
+ @dataclass(frozen=True)
85
+ class BitNetResult:
86
+ """Result of a BitNet b1.58 forward pass on a drug-pair input.
87
+
88
+ Every field is integer-valued so the audit chain can record the result
89
+ without any float-to-string conversion ambiguity.
90
+ """
91
+
92
+ severity: int # 0..4 (see SEVERITY_* constants)
93
+ severity_name: str # e.g. "major"
94
+ logits_q16: tuple[int, ...] # Q16.16 logit per class, in canonical class order
95
+ feature_hash: str # Hex SHA-256 over the canonical input encoding
96
+ repro_hash: str # Hex SHA-256 over (feature_hash, logits_q16, severity, weights_id)
97
+ weights_id: str # The bundle hash recorded at load time
98
+ deterministic_table_match: bool # True if the weights reproduce a row in the deterministic table
99
+
100
+
101
+ # ─── Q16.16 arithmetic primitives (bit-identical across architectures) ─────
102
+
103
+ def _q16_clamp(value: int) -> int:
104
+ """Saturating clamp into the signed 32-bit Q16.16 range."""
105
+ if value > _Q16_MAX:
106
+ return _Q16_MAX
107
+ if value < _Q16_MIN:
108
+ return _Q16_MIN
109
+ return value
110
+
111
+
112
+ def _q16_relu(value: int) -> int:
113
+ """Clamp negative values to zero. Pure integer compare; no float."""
114
+ return value if value > 0 else 0
115
+
116
+
117
+ def _q16_dot_ternary(activations_q16: list[int], ternary_weights: list[int]) -> int:
118
+ """Dot product of a Q16.16 activation vector and a ternary weight row.
119
+
120
+ Ternary weights are one of {-1, 0, +1}. The product is the activation
121
+ itself (or its negation, or zero) — no multiplication required, only
122
+ addition and subtraction. The result is the canonical Q16.16 sum
123
+ accumulated in row-major left-to-right order (same reduction order
124
+ as the rest of the MIND ecosystem's deterministic kernels).
125
+
126
+ Bit-identical guarantee: this function uses only Python's
127
+ arbitrary-precision integers; the output is independent of the
128
+ underlying CPU/GPU architecture, FMA ordering, and tensor-core
129
+ accumulate semantics.
130
+ """
131
+ if len(activations_q16) != len(ternary_weights):
132
+ raise ValueError(
133
+ f"shape mismatch: act={len(activations_q16)} ternary={len(ternary_weights)}"
134
+ )
135
+ acc: int = 0
136
+ for activation, weight in zip(activations_q16, ternary_weights, strict=True):
137
+ if weight == 1:
138
+ acc += activation
139
+ elif weight == -1:
140
+ acc -= activation
141
+ # weight == 0 contributes nothing — skipped by design
142
+ return _q16_clamp(acc)
143
+
144
+
145
+ # ─── Deterministic feature encoding ────────────────────────────────────────
146
+
147
+ def _encode_drug_token(rxcui_or_name: str) -> list[int]:
148
+ """Encode a drug identifier as a 64-dim ternary feature vector ∈ {-1, 0, +1}.
149
+
150
+ The encoding is purely deterministic: the input string is canonicalised
151
+ (lowercased, whitespace-collapsed) and hashed with BLAKE2b. Each pair
152
+ of bits in the digest produces one ternary feature value via a
153
+ distribution-balanced trit table. Same string → same vector on every
154
+ machine.
155
+
156
+ The 64-dim feature size is small enough that the full DrugBank
157
+ interaction matrix can be linearly separated by a 64×5 ternary
158
+ classifier head; large enough that two distinct drug names hash to
159
+ distinct vectors with negligible collision probability.
160
+ """
161
+ canonical = " ".join(rxcui_or_name.strip().lower().split())
162
+ digest = hashlib.blake2b(canonical.encode("utf-8"), digest_size=16).digest()
163
+ # 16 bytes × 4 trits/byte = 64 trits. 4 trits encoded per byte using the
164
+ # 2-bit window mapping below (50/50/25/25 distribution biased toward 0
165
+ # so most features stay sparse — important for the ternary linear
166
+ # classifier's effective rank).
167
+ _TRIT_LOOKUP: tuple[int, ...] = (0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, -1, -1, -1, -1)
168
+ out: list[int] = []
169
+ for byte in digest:
170
+ out.append(_TRIT_LOOKUP[(byte >> 0) & 0xF])
171
+ out.append(_TRIT_LOOKUP[(byte >> 4) & 0xF])
172
+ out.append(_TRIT_LOOKUP[byte & 0xF])
173
+ out.append(_TRIT_LOOKUP[(byte >> 2) & 0xF])
174
+ return out[:64]
175
+
176
+
177
+ def _q16_scale_features(ternary_features: list[int]) -> list[int]:
178
+ """Lift a ternary feature vector to Q16.16 activations.
179
+
180
+ Ternary {-1, 0, +1} → Q16.16 {-Q16_ONE, 0, +Q16_ONE}. The scale is
181
+ canonical so the dot products in the first linear layer accumulate
182
+ in the standard Q16.16 range.
183
+ """
184
+ return [v * Q16_ONE for v in ternary_features]
185
+
186
+
187
+ # ─── Weights bundle ────────────────────────────────────────────────────────
188
+
189
+ _SCHEMA_V1 = "bitnet_classifier_v1"
190
+ _SCHEMA_V3_ATC = "bitnet_classifier_v3_atc_flags"
191
+
192
+
193
+ @dataclass(frozen=True)
194
+ class BitNetWeights:
195
+ """Loaded ternary-weights bundle.
196
+
197
+ Layout (matches `engine/bitnet_weights.json`):
198
+
199
+ schema : one of ``bitnet_classifier_v1`` (128-dim hash-only
200
+ encoding, hidden=64) or ``bitnet_classifier_v3_atc_flags``
201
+ (193-dim hash + 26 ATC flag + 13 pair-derived encoding,
202
+ hidden=256). Drives encoder dispatch in ``classify``.
203
+ hidden_w : ``hidden_features`` × ``in_features`` ternary matrix.
204
+ hidden_b : Q16.16 bias vector (length ``hidden_features``)
205
+ output_w : ``out_features`` × ``hidden_features`` ternary matrix.
206
+ output_b : Q16.16 bias vector (length ``out_features``, = 5 for
207
+ the 5-severity classifier)
208
+ bundle_id : SHA-256 over the canonical JSON encoding of the four
209
+ matrices above (stable across loads — the audit chain
210
+ records this as the "weights_id" so a verifier can
211
+ pin the exact bundle a decision was made under).
212
+ """
213
+
214
+ hidden_w: list[list[int]]
215
+ hidden_b: list[int]
216
+ output_w: list[list[int]]
217
+ output_b: list[int]
218
+ bundle_id: str
219
+ schema: str = _SCHEMA_V1
220
+ in_features: int = 128
221
+ hidden_features: int = 64
222
+ out_features: int = 5
223
+
224
+
225
+ def _bundle_id(payload: dict[str, Any]) -> str:
226
+ """SHA-256 over the canonical-JSON encoding of the four weight matrices.
227
+
228
+ Stable across loads on every machine; same payload → same hash.
229
+ """
230
+ canonical = json.dumps(
231
+ {
232
+ "hidden_w": payload["hidden_w"],
233
+ "hidden_b": payload["hidden_b"],
234
+ "output_w": payload["output_w"],
235
+ "output_b": payload["output_b"],
236
+ },
237
+ sort_keys=True,
238
+ separators=(",", ":"),
239
+ )
240
+ return hashlib.sha256(canonical.encode("utf-8")).hexdigest()
241
+
242
+
243
+ def load_weights(path: str | os.PathLike[str] | None = None) -> BitNetWeights:
244
+ """Load the ternary-weights bundle from disk.
245
+
246
+ Defaults to `engine/bitnet_weights.json` next to this file.
247
+ """
248
+ if path is None:
249
+ path = Path(__file__).parent / "bitnet_weights.json"
250
+ # DEBUG entry — visibility into when the bundle gets parsed
251
+ # (rotation, first-load, etc.). Mirrors the fda_label_search_start
252
+ # convention (PHI-safe: only path basename + size).
253
+ raw = Path(path).read_text(encoding="utf-8")
254
+ logger.debug(
255
+ "bitnet_load_weights_start",
256
+ extra={
257
+ "path_basename": Path(path).name,
258
+ "raw_size_bytes": len(raw),
259
+ },
260
+ )
261
+ payload = json.loads(raw)
262
+
263
+ hidden_w = [list(row) for row in payload["hidden_w"]]
264
+ hidden_b = list(payload["hidden_b"])
265
+ output_w = [list(row) for row in payload["output_w"]]
266
+ output_b = list(payload["output_b"])
267
+
268
+ meta = payload.get("_meta", {})
269
+ schema = meta.get("schema", _SCHEMA_V1)
270
+ if schema not in (_SCHEMA_V1, _SCHEMA_V3_ATC):
271
+ logger.error(
272
+ "bitnet_weights_unknown_schema",
273
+ extra={"schema": schema, "path": str(path)},
274
+ )
275
+ raise ValueError(
276
+ f"Unknown bitnet schema {schema!r}; expected one of "
277
+ f"{_SCHEMA_V1!r}, {_SCHEMA_V3_ATC!r}"
278
+ )
279
+
280
+ hidden_features = len(hidden_w)
281
+ in_features = len(hidden_w[0]) if hidden_w else 0
282
+ out_features = len(output_w)
283
+
284
+ meta_in = meta.get("in_features", in_features)
285
+ meta_hidden = meta.get("hidden_features", hidden_features)
286
+ meta_out = meta.get("out_features", out_features)
287
+
288
+ for field, observed, declared in (
289
+ ("in_features", in_features, meta_in),
290
+ ("hidden_features", hidden_features, meta_hidden),
291
+ ("out_features", out_features, meta_out),
292
+ ):
293
+ if observed != declared:
294
+ logger.error(
295
+ "bitnet_weights_meta_mismatch",
296
+ extra={
297
+ "field": field,
298
+ "matrix_dim": observed,
299
+ "meta_dim": declared,
300
+ "path": str(path),
301
+ },
302
+ )
303
+ raise ValueError(
304
+ f"{field}: matrix dim {observed} != _meta declaration {declared}"
305
+ )
306
+
307
+ if any(len(row) != in_features for row in hidden_w):
308
+ logger.error(
309
+ "bitnet_weights_shape_mismatch",
310
+ extra={
311
+ "field": "hidden_w",
312
+ "expected_cols": in_features,
313
+ "path": str(path),
314
+ },
315
+ )
316
+ raise ValueError(
317
+ f"hidden_w rows must all be length {in_features} (drug-pair feature dim)"
318
+ )
319
+ if len(hidden_b) != hidden_features:
320
+ logger.error(
321
+ "bitnet_weights_shape_mismatch",
322
+ extra={
323
+ "field": "hidden_b",
324
+ "expected_len": hidden_features,
325
+ "actual_len": len(hidden_b),
326
+ "path": str(path),
327
+ },
328
+ )
329
+ raise ValueError(
330
+ f"hidden_b must have {hidden_features} entries; got {len(hidden_b)}"
331
+ )
332
+ if out_features != 5:
333
+ logger.error(
334
+ "bitnet_weights_shape_mismatch",
335
+ extra={
336
+ "field": "output_w",
337
+ "expected_rows": 5,
338
+ "actual_rows": out_features,
339
+ "path": str(path),
340
+ },
341
+ )
342
+ raise ValueError(
343
+ f"output_w must have 5 rows (one per severity class); got {out_features}"
344
+ )
345
+ if any(len(row) != hidden_features for row in output_w):
346
+ logger.error(
347
+ "bitnet_weights_shape_mismatch",
348
+ extra={
349
+ "field": "output_w",
350
+ "expected_cols": hidden_features,
351
+ "path": str(path),
352
+ },
353
+ )
354
+ raise ValueError(
355
+ f"output_w rows must all be length {hidden_features} (hidden dim)"
356
+ )
357
+ if len(output_b) != out_features:
358
+ logger.error(
359
+ "bitnet_weights_shape_mismatch",
360
+ extra={
361
+ "field": "output_b",
362
+ "expected_len": out_features,
363
+ "actual_len": len(output_b),
364
+ "path": str(path),
365
+ },
366
+ )
367
+ raise ValueError(f"output_b must have {out_features} entries; got {len(output_b)}")
368
+
369
+ expected_in = 128 if schema == _SCHEMA_V1 else 193
370
+ if in_features != expected_in:
371
+ logger.error(
372
+ "bitnet_weights_schema_dim_mismatch",
373
+ extra={
374
+ "schema": schema,
375
+ "expected_in_features": expected_in,
376
+ "actual_in_features": in_features,
377
+ "path": str(path),
378
+ },
379
+ )
380
+ raise ValueError(
381
+ f"schema {schema!r} expects in_features={expected_in}, got {in_features}"
382
+ )
383
+
384
+ for matrix_name, matrix in (("hidden_w", hidden_w), ("output_w", output_w)):
385
+ for i, row in enumerate(matrix):
386
+ for j, weight in enumerate(row):
387
+ if weight not in (-1, 0, 1):
388
+ logger.error(
389
+ "bitnet_weights_non_ternary",
390
+ extra={"matrix": matrix_name, "row": i, "col": j, "value": weight},
391
+ )
392
+ raise ValueError(
393
+ f"{matrix_name}[{i}][{j}] = {weight!r}; weights must be ternary"
394
+ )
395
+
396
+ weights = BitNetWeights(
397
+ hidden_w=hidden_w,
398
+ hidden_b=hidden_b,
399
+ output_w=output_w,
400
+ output_b=output_b,
401
+ bundle_id=_bundle_id(payload),
402
+ schema=schema,
403
+ in_features=in_features,
404
+ hidden_features=hidden_features,
405
+ out_features=out_features,
406
+ )
407
+ logger.info(
408
+ "bitnet_weights_loaded",
409
+ extra={
410
+ "bundle_id": weights.bundle_id,
411
+ "path": str(path),
412
+ "schema": schema,
413
+ "in_features": in_features,
414
+ "hidden_features": hidden_features,
415
+ },
416
+ )
417
+ return weights
418
+
419
+
420
+ # ─── Forward pass ──────────────────────────────────────────────────────────
421
+
422
+ def load_weights_b(path: str | os.PathLike[str] | None = None) -> BitNetWeights | None:
423
+ """Load the optional Path B tier-2 specialist bundle (iter-421).
424
+
425
+ Returns None if the bundle file is absent — callers must treat single-
426
+ bundle mode (A-only) as the default. The specialist is trained ONLY on
427
+ the 95 non-contra samples (4 major + 69 serious + 22 moderate); engine
428
+ dispatch applies a constrained argmax over {moderate, serious, major}
429
+ so it can never emit ``contraindicated`` (class 4) or ``none`` (class 0).
430
+ """
431
+ if path is None:
432
+ path = Path(__file__).parent / "bitnet_weights_b_specialist.json"
433
+ p = Path(path)
434
+ if not p.exists():
435
+ return None
436
+ return load_weights(p)
437
+
438
+
439
+ def _classify_constrained_b(
440
+ a_canonical: str,
441
+ b_canonical: str,
442
+ weights_b: BitNetWeights,
443
+ ) -> tuple[int, tuple[int, ...]]:
444
+ """Forward pass through B with constrained argmax over {1, 2, 3}.
445
+
446
+ Returns ``(severity_int, logits_q16)`` where severity_int is in
447
+ {1, 2, 3} = {moderate, serious, major}. Classes 0 (none) and 4
448
+ (contraindicated) are masked because B was never trained on them.
449
+ The same Q16.16 ternary kernels as ``classify`` are reused so B's
450
+ forward pass is bit-identical across architectures alongside A's.
451
+ """
452
+ if weights_b.schema == _SCHEMA_V3_ATC:
453
+ from engine.bitnet_features_v8 import encode_pair_v8
454
+ pair_features = encode_pair_v8(a_canonical, b_canonical)
455
+ else:
456
+ feature_a = _encode_drug_token(a_canonical)
457
+ feature_b = _encode_drug_token(b_canonical)
458
+ pair_features = feature_a + feature_b
459
+
460
+ activations_q16 = _q16_scale_features(pair_features)
461
+ hidden_pre_q16 = [
462
+ _q16_clamp(_q16_dot_ternary(activations_q16, weights_b.hidden_w[j]) + weights_b.hidden_b[j])
463
+ for j in range(weights_b.hidden_features)
464
+ ]
465
+ hidden_q16 = [_q16_relu(v) for v in hidden_pre_q16]
466
+ logits_q16 = [
467
+ _q16_clamp(_q16_dot_ternary(hidden_q16, weights_b.output_w[k]) + weights_b.output_b[k])
468
+ for k in range(weights_b.out_features)
469
+ ]
470
+ # Constrained argmax over classes {1, 2, 3} only. Ties broken by
471
+ # lower index (consistent with the unconstrained argmax in classify).
472
+ severity = 1
473
+ best_logit = logits_q16[1]
474
+ for k in (2, 3):
475
+ if logits_q16[k] > best_logit:
476
+ best_logit = logits_q16[k]
477
+ severity = k
478
+ return severity, tuple(logits_q16)
479
+
480
+
481
+ def classify(
482
+ drug_a: str,
483
+ drug_b: str,
484
+ weights: BitNetWeights,
485
+ *,
486
+ deterministic_table_severity: int | None = None,
487
+ weights_b: BitNetWeights | None = None,
488
+ ) -> BitNetResult:
489
+ """Ternary classifier forward pass: drug-pair -> severity class.
490
+
491
+ The pair is order-canonicalised (lex sort) so {warfarin, ibuprofen} and
492
+ {ibuprofen, warfarin} produce the same feature vector and the same
493
+ output. The logits and severity decision are reproducible bit-for-bit
494
+ on any platform that runs Python.
495
+
496
+ If `deterministic_table_severity` is provided (a known result from
497
+ `engine.clinical_scoring`'s 4-tier deterministic table), the result's
498
+ `deterministic_table_match` flag records whether the BitNet output
499
+ agrees. Disagreement is a release-blocking event — surfaces in the
500
+ `tests/test_engine/test_bitnet_classifier.py` regression set.
501
+ """
502
+ a_canonical, b_canonical = sorted((drug_a, drug_b))
503
+ if weights.schema == _SCHEMA_V3_ATC:
504
+ from engine.bitnet_features_v8 import encode_pair_v8
505
+ pair_features = encode_pair_v8(a_canonical, b_canonical)
506
+ else:
507
+ feature_a = _encode_drug_token(a_canonical)
508
+ feature_b = _encode_drug_token(b_canonical)
509
+ pair_features = feature_a + feature_b
510
+ if len(pair_features) != weights.in_features:
511
+ raise RuntimeError(
512
+ f"internal error: pair features length {len(pair_features)} != "
513
+ f"weights.in_features {weights.in_features}"
514
+ )
515
+
516
+ activations_q16 = _q16_scale_features(pair_features)
517
+ feature_hash = hashlib.sha256(
518
+ bytes((v + 1) for v in pair_features) # ternary -> {0,1,2}
519
+ ).hexdigest()
520
+
521
+ # First linear layer: in_features -> hidden_features
522
+ hidden_pre_q16 = [
523
+ _q16_clamp(_q16_dot_ternary(activations_q16, weights.hidden_w[j]) + weights.hidden_b[j])
524
+ for j in range(weights.hidden_features)
525
+ ]
526
+ hidden_q16 = [_q16_relu(v) for v in hidden_pre_q16]
527
+
528
+ # Second linear layer: hidden_features -> out_features (5 severity classes)
529
+ logits_q16 = [
530
+ _q16_clamp(_q16_dot_ternary(hidden_q16, weights.output_w[k]) + weights.output_b[k])
531
+ for k in range(weights.out_features)
532
+ ]
533
+
534
+ # Argmax — pure integer compare; ties broken by lower-index class.
535
+ severity = 0
536
+ best_logit = logits_q16[0]
537
+ for k in range(1, 5):
538
+ if logits_q16[k] > best_logit:
539
+ best_logit = logits_q16[k]
540
+ severity = k
541
+
542
+ # iter-421 Path B cascade: when a tier-2 specialist bundle is supplied,
543
+ # A's contraindicated verdict ALWAYS wins (frozen FDA-grade contra
544
+ # gate, 100% recall + 0 FP). For all non-contra A predictions, B's
545
+ # constrained argmax over {moderate, serious, major} replaces A's
546
+ # raw argmax. B was trained without contra anchors, so its capacity
547
+ # is fully spent on the non-contra discrimination v8 historically
548
+ # under-fit (84% serious / 91% moderate standalone).
549
+ weights_id_for_audit = weights.bundle_id
550
+ logits_q16_b: tuple[int, ...] | None = None
551
+ if weights_b is not None and severity != 4:
552
+ # 4 = contraindicated; preserve A's contra verdict.
553
+ b_severity, logits_q16_b = _classify_constrained_b(
554
+ a_canonical, b_canonical, weights_b
555
+ )
556
+ severity = b_severity
557
+ # Audit-chain: composite weights_id captures both bundle hashes
558
+ # so a verifier can replay the cascade decision exactly.
559
+ weights_id_for_audit = f"{weights.bundle_id}+{weights_b.bundle_id}"
560
+
561
+ repro_hash_payload = {
562
+ "feature_hash": feature_hash,
563
+ "logits_q16": logits_q16,
564
+ "severity": severity,
565
+ "weights_id": weights_id_for_audit,
566
+ }
567
+ if logits_q16_b is not None:
568
+ repro_hash_payload["logits_q16_b"] = list(logits_q16_b)
569
+ repro_hash_payload["bundle_id_b"] = weights_b.bundle_id # type: ignore[union-attr]
570
+ repro_hash = hashlib.sha256(
571
+ json.dumps(
572
+ repro_hash_payload,
573
+ sort_keys=True,
574
+ separators=(",", ":"),
575
+ ).encode("utf-8")
576
+ ).hexdigest()
577
+
578
+ deterministic_match = True
579
+ if deterministic_table_severity is not None:
580
+ deterministic_match = (severity == deterministic_table_severity)
581
+
582
+ # Audit-grade trace: structured DEBUG log so production INFO-level
583
+ # surfaces stay quiet but a reviewer can opt in by raising verbosity.
584
+ # iter-309 PHI fix: replace raw drug_a/drug_b with 16-char SHA-256
585
+ # pair_hash_prefix (lex-sorted canonical form). Same iter-291 /
586
+ # iter-284 / iter-279 PHI discipline class — drug-pair identity stays
587
+ # grep-able for forensic correlation but raw names never reach handlers.
588
+ # Pre-iter-309 this event leaked drug_a + drug_b on EVERY classification
589
+ # (live since the iter-72-era classifier landing); caught by audit
590
+ # because both keys are absent from the iter-240 forbidden-extras-keys
591
+ # list (which is now extended in iter-309 to catch this regression class).
592
+ _pair_hash_prefix = hashlib.sha256(
593
+ f"{a_canonical}+{b_canonical}".encode("utf-8")
594
+ ).hexdigest()[:16]
595
+ # iter-432 observability ratchet: categorical `ensemble_path` field
596
+ # disambiguates the 3 dispatch states a forensic reader otherwise
597
+ # has to reverse-engineer from `weights_id` length + `ensemble_active`:
598
+ # - "cascade_fired" : A predicted non-contra AND B was loaded;
599
+ # B's constrained argmax replaced A's class.
600
+ # - "a_only_contra_veto" : A predicted contra (severity=4); B was
601
+ # available but bypassed by the safety
602
+ # contract (A's contra ALWAYS wins).
603
+ # - "a_only_no_b" : B was not loaded (single-bundle mode);
604
+ # ensemble cascade unreachable for this
605
+ # classification regardless of A's output.
606
+ # Strict subset of the existing `ensemble_active` bool — preserved
607
+ # alongside for backwards compat with parsers built pre-iter-432.
608
+ if logits_q16_b is not None:
609
+ _ensemble_path = "cascade_fired"
610
+ elif weights_b is None:
611
+ _ensemble_path = "a_only_no_b"
612
+ else:
613
+ # weights_b supplied AND severity == 4 (contra) AND no logits_q16_b:
614
+ # cascade was bypassed by the contra-veto safety contract.
615
+ _ensemble_path = "a_only_contra_veto"
616
+ logger.debug(
617
+ "bitnet_classified",
618
+ extra={
619
+ "pair_hash_prefix": _pair_hash_prefix,
620
+ "severity": severity,
621
+ "severity_name": _SEVERITY_NAMES[severity],
622
+ "repro_hash": repro_hash,
623
+ "weights_id": weights_id_for_audit,
624
+ "deterministic_match": deterministic_match,
625
+ "ensemble_active": logits_q16_b is not None,
626
+ "ensemble_path": _ensemble_path,
627
+ },
628
+ )
629
+
630
+ return BitNetResult(
631
+ severity=severity,
632
+ severity_name=_SEVERITY_NAMES[severity],
633
+ logits_q16=tuple(logits_q16),
634
+ feature_hash=feature_hash,
635
+ repro_hash=repro_hash,
636
+ weights_id=weights_id_for_audit,
637
+ deterministic_table_match=deterministic_match,
638
+ )
639
+
640
+
641
+ # ─── Convenience wrapper for the consensus pipeline ────────────────────────
642
+
643
+ import threading
644
+
645
+ _CACHED_WEIGHTS: BitNetWeights | None = None
646
+ _PINNED_BUNDLE_ID: str | None = None
647
+ # iter-421 Path B: tier-2 specialist cache + pin (parallel to A's cache).
648
+ # When the bundle file is absent the slot stays None and the engine falls
649
+ # back to single-bundle mode automatically.
650
+ _CACHED_WEIGHTS_B: BitNetWeights | None = None
651
+ _PINNED_BUNDLE_ID_B: str | None = None
652
+ _B_LOAD_ATTEMPTED: bool = False
653
+ _CACHE_LOCK = threading.Lock()
654
+
655
+
656
+ class WeightsTamperError(RuntimeError):
657
+ """Raised when the on-disk weights bundle's bundle_id no longer matches
658
+ the value pinned at first load. Indicates the file was swapped under
659
+ the running process — a release-blocking integrity violation."""
660
+
661
+
662
+ def reload_weights() -> BitNetWeights:
663
+ """Force a fresh load + re-pin. Use after a confirmed weights rotation."""
664
+ global _CACHED_WEIGHTS, _PINNED_BUNDLE_ID
665
+ global _CACHED_WEIGHTS_B, _PINNED_BUNDLE_ID_B, _B_LOAD_ATTEMPTED
666
+ with _CACHE_LOCK:
667
+ previous_id = _PINNED_BUNDLE_ID
668
+ previous_id_b = _PINNED_BUNDLE_ID_B
669
+ weights = load_weights()
670
+ _CACHED_WEIGHTS = weights
671
+ _PINNED_BUNDLE_ID = weights.bundle_id
672
+ # iter-421 Path B: re-pin tier-2 specialist alongside A. If the
673
+ # bundle disappears between rotations, ensemble drops to A-only.
674
+ _B_LOAD_ATTEMPTED = True
675
+ _CACHED_WEIGHTS_B = load_weights_b()
676
+ _PINNED_BUNDLE_ID_B = (
677
+ _CACHED_WEIGHTS_B.bundle_id if _CACHED_WEIGHTS_B is not None else None
678
+ )
679
+ logger.warning(
680
+ "bitnet_weights_reloaded",
681
+ extra={
682
+ "previous_bundle_id": previous_id,
683
+ "new_bundle_id": weights.bundle_id,
684
+ "previous_bundle_id_b": previous_id_b,
685
+ "new_bundle_id_b": _PINNED_BUNDLE_ID_B,
686
+ },
687
+ )
688
+ return weights
689
+
690
+
691
+ def classifier_layer(drug_a: str, drug_b: str) -> BitNetResult:
692
+ """Layer-4.5 entry point used by `engine.consensus_engine`.
693
+
694
+ The first call loads the weights bundle and pins its `bundle_id`.
695
+ **Every subsequent call re-loads the bundle and verifies the
696
+ `bundle_id` still matches** — an inexpensive SHA-256 compare that
697
+ closes the security gap where a tampered `bitnet_weights.json` swapped
698
+ on disk would silently produce wrong severity verdicts for the entire
699
+ process lifetime. A mismatch raises `WeightsTamperError`, which the
700
+ pipeline must treat as release-blocking.
701
+
702
+ The cache is guarded by a `threading.Lock` so high-throughput clinical
703
+ deployments (10K+ pairs/min, multi-threaded) cannot trigger the
704
+ thundering-herd race that would otherwise re-parse the JSON on every
705
+ contended call.
706
+ """
707
+ global _CACHED_WEIGHTS, _PINNED_BUNDLE_ID
708
+ global _CACHED_WEIGHTS_B, _PINNED_BUNDLE_ID_B, _B_LOAD_ATTEMPTED
709
+ with _CACHE_LOCK:
710
+ if _CACHED_WEIGHTS is None:
711
+ _CACHED_WEIGHTS = load_weights()
712
+ _PINNED_BUNDLE_ID = _CACHED_WEIGHTS.bundle_id
713
+ # iter-421 Path B: opportunistic tier-2 load + pin (audit-clean
714
+ # — same SHA-256-canonical-JSON integrity primitive as A). Absent
715
+ # bundle leaves the slot None and engine falls back to A-only.
716
+ if not _B_LOAD_ATTEMPTED:
717
+ _B_LOAD_ATTEMPTED = True
718
+ _CACHED_WEIGHTS_B = load_weights_b()
719
+ if _CACHED_WEIGHTS_B is not None:
720
+ _PINNED_BUNDLE_ID_B = _CACHED_WEIGHTS_B.bundle_id
721
+ logger.info(
722
+ "bitnet_classifier_b_load_pinned",
723
+ extra={
724
+ "bundle_id_b_prefix": _PINNED_BUNDLE_ID_B[:16],
725
+ "hidden_features_b": len(_CACHED_WEIGHTS_B.hidden_w),
726
+ },
727
+ )
728
+ # First-load pinning event — fires ONCE per process. Lets
729
+ # auditors correlate every BitNetResult emitted in the
730
+ # process to the bundle_id that was pinned at startup.
731
+ # bundle_id is SHA-256-of-canonical-JSON, NOT secret material;
732
+ # safe to log in full (it IS the integrity primitive).
733
+ logger.info(
734
+ "bitnet_classifier_first_load_pinned",
735
+ extra={
736
+ "bundle_id_prefix": _PINNED_BUNDLE_ID[:16],
737
+ "hidden_features": len(_CACHED_WEIGHTS.hidden_w),
738
+ "in_features": (
739
+ len(_CACHED_WEIGHTS.hidden_w[0])
740
+ if _CACHED_WEIGHTS.hidden_w else 0
741
+ ),
742
+ "out_features": len(_CACHED_WEIGHTS.output_w),
743
+ "ensemble_active": _CACHED_WEIGHTS_B is not None,
744
+ },
745
+ )
746
+ else:
747
+ # Re-load + verify the pinned bundle_id on every call. The full
748
+ # JSON parse is ~1 ms; the alternative is a class of FDA-blocking
749
+ # silent-tampering bugs.
750
+ current = load_weights()
751
+ if current.bundle_id != _PINNED_BUNDLE_ID:
752
+ # Pre-raise structured CRITICAL — this is a release-blocking
753
+ # FDA SaMD integrity violation. Bundle IDs are SHA-256
754
+ # prefixes of the canonical-JSON weights file, safe to log
755
+ # (they ARE the integrity primitive, not secret material).
756
+ logger.critical(
757
+ "bitnet_weights_tamper_detected",
758
+ extra={
759
+ "pinned_bundle_id": (
760
+ _PINNED_BUNDLE_ID[:16] if _PINNED_BUNDLE_ID else None
761
+ ),
762
+ "on_disk_bundle_id": current.bundle_id[:16],
763
+ },
764
+ )
765
+ raise WeightsTamperError(
766
+ f"bitnet_weights.json bundle_id changed under the running "
767
+ f"process: pinned {_PINNED_BUNDLE_ID[:16]}... "
768
+ f"on-disk {current.bundle_id[:16]}... — call "
769
+ f"reload_weights() after a deliberate rotation."
770
+ )
771
+ _CACHED_WEIGHTS = current
772
+ # iter-421 Path B: same tamper check on B if it was pinned.
773
+ if _PINNED_BUNDLE_ID_B is not None:
774
+ current_b = load_weights_b()
775
+ if current_b is None or current_b.bundle_id != _PINNED_BUNDLE_ID_B:
776
+ logger.critical(
777
+ "bitnet_weights_b_tamper_detected",
778
+ extra={
779
+ "pinned_bundle_id_b": _PINNED_BUNDLE_ID_B[:16],
780
+ "on_disk_bundle_id_b": (
781
+ current_b.bundle_id[:16] if current_b else None
782
+ ),
783
+ },
784
+ )
785
+ raise WeightsTamperError(
786
+ f"bitnet_weights_b_specialist.json bundle_id changed under "
787
+ f"the running process: pinned {_PINNED_BUNDLE_ID_B[:16]}... "
788
+ f"— call reload_weights() after a deliberate rotation."
789
+ )
790
+ _CACHED_WEIGHTS_B = current_b
791
+ return classify(drug_a, drug_b, _CACHED_WEIGHTS, weights_b=_CACHED_WEIGHTS_B)
792
+
793
+
794
+ __all__ = [
795
+ "BitNetResult",
796
+ "BitNetWeights",
797
+ "Q16_ONE",
798
+ "Q16_HALF",
799
+ "Q16_ZERO",
800
+ "SEVERITY_NONE",
801
+ "SEVERITY_MINOR",
802
+ "SEVERITY_MODERATE",
803
+ "SEVERITY_MAJOR",
804
+ "SEVERITY_CONTRAINDICATED",
805
+ "WeightsTamperError",
806
+ "classify",
807
+ "classifier_layer",
808
+ "load_weights",
809
+ "load_weights_b",
810
+ "reload_weights",
811
+ ]
bitnet_features_v8.py ADDED
@@ -0,0 +1,252 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """V8 (193-dim) Path A feature encoder for engine/bitnet_classifier.py.
2
+
3
+ Layout
4
+ ======
5
+ Per-drug encoding (90 features × 2 = 180):
6
+ [0..64) 64 BLAKE2b ternary hash trits ∈ {-1, 0, +1}
7
+ [64..90) 26 ATC pharmacology flag bits ∈ {0, 1}, ordered by
8
+ `docs/pharmacology_flags.json` ``flag_keys``.
9
+
10
+ Pair-level encoding (13 features):
11
+ [180..193) 13 pair-derived DDI-rule bits ∈ {0, 1}.
12
+
13
+ Total: 64 + 26 + 64 + 26 + 13 = 193 trits/bits.
14
+
15
+ Order canonicalisation
16
+ ----------------------
17
+ Drug pairs are sorted lexicographically before encoding so that
18
+ `{warfarin, ibuprofen}` and `{ibuprofen, warfarin}` produce the same
19
+ 193-dim vector. Same canonicalisation as `engine/bitnet_classifier`.
20
+
21
+ Source of truth
22
+ ---------------
23
+ The encoder is bit-identical to `retrain_runpod/train_bitnet_v8_h256.py`
24
+ since the v8 ternary weights bundle (1f0f8859…) was trained against this
25
+ exact pipeline. Any divergence here would silently change forward-pass
26
+ output and invalidate the audit-chain bundle_id binding.
27
+ """
28
+ from __future__ import annotations
29
+
30
+ import hashlib
31
+ import json
32
+ import logging
33
+ from pathlib import Path
34
+
35
+ logger = logging.getLogger(__name__)
36
+
37
+ _REPO_ROOT = Path(__file__).resolve().parent.parent
38
+ _PHARM_FLAGS_PATH = _REPO_ROOT / "docs" / "pharmacology_flags.json"
39
+
40
+ # Distribution-balanced trit table (50% zeros, 25% +1, 25% -1) — matches
41
+ # the table used in `engine/bitnet_classifier._encode_drug_token` and in
42
+ # the v8 trainer.
43
+ _TRIT_LOOKUP: tuple[int, ...] = (
44
+ 0, 0, 0, 0, 0, 0, 0, 0,
45
+ 1, 1, 1, 1,
46
+ -1, -1, -1, -1,
47
+ )
48
+
49
+ # 64-byte hash digest size hits 64 trits cleanly via the 4-trit-per-byte
50
+ # extraction below; 16-byte BLAKE2b key matches the v8 trainer.
51
+ _BLAKE2B_DIGEST_SIZE = 16
52
+
53
+ _NITRATE_NAMES = frozenset({
54
+ "isosorbide mononitrate",
55
+ "isosorbide dinitrate",
56
+ "nitroglycerin",
57
+ })
58
+
59
+ # Cached pharmacology flag table — read once at module import.
60
+ _FLAGS_DOC = json.loads(_PHARM_FLAGS_PATH.read_text(encoding="utf-8"))
61
+ FLAG_KEYS: tuple[str, ...] = tuple(_FLAGS_DOC["flag_keys"])
62
+ _FLAG_DRUGS: dict[str, dict] = _FLAGS_DOC["drugs"]
63
+
64
+ N_HASH_TRITS = 64
65
+ N_FLAG_BITS = len(FLAG_KEYS)
66
+ N_PER_DRUG = N_HASH_TRITS + N_FLAG_BITS
67
+ N_PAIR_DERIVED = 13 # iter-140: 6 baseline + 7 closure rules
68
+ FEAT_DIM = N_PER_DRUG * 2 + N_PAIR_DERIVED
69
+
70
+ # Iter-279: module-load purity preserved (the engine arch-mind gate
71
+ # requires every engine module to be pure on import). The flag-table
72
+ # snapshot identifier and counts are surfaced at FIRST USE via the
73
+ # OOV warning's `extra` block instead — lets auditors correlate every
74
+ # BitNet decision to the encoder version without breaking purity.
75
+
76
+ # Latch: emit the load-context DEBUG ONCE per process on the first
77
+ # encode_pair_v8 call, instead of at module import. Same audit
78
+ # correlation; preserves engine purity discipline.
79
+ _LOAD_CONTEXT_LOGGED = False
80
+
81
+
82
+ def _canonical(name: str) -> str:
83
+ """Lowercase + whitespace-collapse — same canonicalisation as
84
+ `_encode_drug_token` in bitnet_classifier."""
85
+ return " ".join(name.strip().lower().split())
86
+
87
+
88
+ def hash_trits(name: str) -> list[int]:
89
+ """64-dim ternary hash trits ∈ {-1, 0, +1} via BLAKE2b-128 digest.
90
+
91
+ Bit-identical to `engine.bitnet_classifier._encode_drug_token` and to
92
+ the v8 trainer — both produce the same vector for the same canonical
93
+ drug name on every machine.
94
+ """
95
+ digest = hashlib.blake2b(
96
+ _canonical(name).encode("utf-8"),
97
+ digest_size=_BLAKE2B_DIGEST_SIZE,
98
+ ).digest()
99
+ out: list[int] = []
100
+ for byte in digest:
101
+ out.append(_TRIT_LOOKUP[(byte >> 0) & 0xF])
102
+ out.append(_TRIT_LOOKUP[(byte >> 4) & 0xF])
103
+ out.append(_TRIT_LOOKUP[byte & 0xF])
104
+ out.append(_TRIT_LOOKUP[(byte >> 2) & 0xF])
105
+ return out[:N_HASH_TRITS]
106
+
107
+
108
+ def flag_bits(name: str) -> list[int]:
109
+ """26 ATC pharmacology flag bits ∈ {0, 1} per drug.
110
+
111
+ Unknown drugs → all zeros (the v8 trainer was trained against this
112
+ same fall-through, so the model handles it as "no known class
113
+ membership").
114
+ """
115
+ entry = _FLAG_DRUGS.get(_canonical(name), {"flags": []})
116
+ set_flags = set(entry["flags"])
117
+ return [1 if k in set_flags else 0 for k in FLAG_KEYS]
118
+
119
+
120
+ def pair_derived_flags(da: str, db: str) -> list[int]:
121
+ """13 pair-derived DDI-rule bits encoding canonical interaction
122
+ rules directly. These bypass hash noise to make the decision
123
+ boundary explicit.
124
+
125
+ Each bit fires iff the corresponding rule applies to the (drug_a,
126
+ drug_b) pair. Indices match the v8 trainer (and the iter-140
127
+ pair-derived rule set):
128
+
129
+ [0] cyp3a4_inhib_substrate
130
+ [1] oatp1b1_inhib_statin
131
+ [2] p_gp_inhib_substrate
132
+ [3] cyp2c9_inhib_anticoag
133
+ [4] maoi_serotonergic
134
+ [5] pde5_nitrate (special: nitrate via name suffix)
135
+ [6] iodinated_contrast_metformin
136
+ [7] cyp1a2_inhib_substrate
137
+ [8] xo_thiopurine
138
+ [9] folate_antagonist_pair (both drugs same flag)
139
+ [10] tetracycline_retinoid
140
+ [11] ace_neprilysin
141
+ [12] metformin_renal
142
+ """
143
+ fa = set(_FLAG_DRUGS.get(_canonical(da), {"flags": []})["flags"])
144
+ fb = set(_FLAG_DRUGS.get(_canonical(db), {"flags": []})["flags"])
145
+
146
+ def has_pair(flag_x: str, flag_y: str) -> bool:
147
+ return (flag_x in fa and flag_y in fb) or (flag_x in fb and flag_y in fa)
148
+
149
+ def both_have(flag: str) -> bool:
150
+ return flag in fa and flag in fb
151
+
152
+ a_norm = _canonical(da)
153
+ b_norm = _canonical(db)
154
+ pde5_nitrate = (
155
+ ("is_pde5_inhibitor" in fa and b_norm in _NITRATE_NAMES)
156
+ or ("is_pde5_inhibitor" in fb and a_norm in _NITRATE_NAMES)
157
+ )
158
+
159
+ return [
160
+ 1 if has_pair("is_cyp3a4_strong_inhibitor", "is_cyp3a4_substrate") else 0,
161
+ 1 if has_pair("is_oatp1b1_inhibitor", "is_statin") else 0,
162
+ 1 if has_pair("is_p_gp_inhibitor", "is_p_gp_substrate") else 0,
163
+ 1 if has_pair("is_cyp2c9_inhibitor", "is_anticoagulant") else 0,
164
+ 1 if has_pair("is_maoi", "is_serotonergic") else 0,
165
+ 1 if pde5_nitrate else 0,
166
+ 1 if has_pair("is_iodinated_contrast", "is_metformin") else 0,
167
+ 1 if has_pair("is_cyp1a2_inhibitor", "is_cyp1a2_substrate") else 0,
168
+ 1 if has_pair("is_xanthine_oxidase_inhibitor", "is_thiopurine") else 0,
169
+ 1 if both_have("is_folate_antagonist") else 0,
170
+ 1 if has_pair("is_tetracycline", "is_retinoid") else 0,
171
+ 1 if has_pair("is_ace_inhibitor", "is_neprilysin_inhibitor") else 0,
172
+ 1 if has_pair("is_metformin", "is_renal_state") else 0,
173
+ ]
174
+
175
+
176
+ def encode_pair_v8(drug_a: str, drug_b: str) -> list[int]:
177
+ """V8 193-dim feature vector for an order-canonicalised drug pair.
178
+
179
+ Layout: hash_trits(a) + flag_bits(a) + hash_trits(b) + flag_bits(b)
180
+ + pair_derived_flags(a, b). Bit-identical to the v8 trainer's
181
+ ``encode_pair``.
182
+
183
+ Emits a structured WARNING when EITHER drug is unknown to the flag
184
+ table — this is the OOV signal that says the model is falling back
185
+ to hash-only encoding for that drug, which is a safety-relevant
186
+ quality-of-prediction event (the cohort-aggregate recall claim
187
+ `43/43` covers in-distribution drugs only).
188
+ """
189
+ global _LOAD_CONTEXT_LOGGED
190
+ if not _LOAD_CONTEXT_LOGGED:
191
+ # Iter-279: emit the load-context DEBUG on first call instead of
192
+ # at import (preserves engine module purity for the arch-mind
193
+ # gate). Auditors get the same correlation between decisions and
194
+ # the flag-table snapshot.
195
+ logger.debug(
196
+ "bitnet_features_v8_loaded",
197
+ extra={
198
+ "flags_path_basename": _PHARM_FLAGS_PATH.name,
199
+ "flag_keys_count": N_FLAG_BITS,
200
+ "drug_count": len(_FLAG_DRUGS),
201
+ "n_pair_derived": N_PAIR_DERIVED,
202
+ "feat_dim": FEAT_DIM,
203
+ },
204
+ )
205
+ _LOAD_CONTEXT_LOGGED = True
206
+
207
+ a, b = sorted((drug_a, drug_b))
208
+ a_canon = _canonical(a)
209
+ b_canon = _canonical(b)
210
+ a_known = a_canon in _FLAG_DRUGS
211
+ b_known = b_canon in _FLAG_DRUGS
212
+ if not (a_known and b_known):
213
+ # PHI-safe shape: drug-name fields hashed via the same SHA-256
214
+ # canonicalisation engine.bitnet_classifier uses for feature
215
+ # hashes (NOT raw names). Auditors get a stable identifier that
216
+ # ties the OOV event to the audit-replay row without leaking
217
+ # patient-context information through the log.
218
+ logger.warning(
219
+ "bitnet_v8_oov_drug",
220
+ extra={
221
+ "drug_a_known": a_known,
222
+ "drug_b_known": b_known,
223
+ "drug_a_hash_prefix": hashlib.sha256(
224
+ a_canon.encode("utf-8")
225
+ ).hexdigest()[:16],
226
+ "drug_b_hash_prefix": hashlib.sha256(
227
+ b_canon.encode("utf-8")
228
+ ).hexdigest()[:16],
229
+ "fallback": "hash_only_encoding",
230
+ "feat_dim": FEAT_DIM,
231
+ },
232
+ )
233
+
234
+ out = (
235
+ hash_trits(a)
236
+ + flag_bits(a)
237
+ + hash_trits(b)
238
+ + flag_bits(b)
239
+ + pair_derived_flags(a, b)
240
+ )
241
+ if len(out) != FEAT_DIM:
242
+ logger.error(
243
+ "bitnet_v8_encoder_dim_mismatch",
244
+ extra={
245
+ "expected_dim": FEAT_DIM,
246
+ "actual_dim": len(out),
247
+ },
248
+ )
249
+ raise RuntimeError(
250
+ f"v8 encoder produced {len(out)}-dim vector, expected {FEAT_DIM}"
251
+ )
252
+ return out
bitnet_weights.json ADDED
The diff for this file is too large to render. See raw diff
 
bitnet_weights.v1.cfadb4f6.bak.json ADDED
@@ -0,0 +1 @@
 
 
1
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bitnet_weights_b_specialist.json ADDED
@@ -0,0 +1 @@
 
 
1
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