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tags:
- protein
- biology
- kinase
pipeline_tag: text-classification
---
# Kinase–Substrate Interaction Classifier
Fine-tuned from TAPE ProteinBERT (`bert-base`) on kinase–substrate pairs.
## Input
Concatenated kinase + `<sep>` + substrate amino acid sequences.
## Output
Binary classification: 1 = interaction, 0 = no interaction
## SETUP ENV
```
pip install tensorboard
pip install einops
pip install scikit-learn
pip install plotnine
pip install seaborn
pip install tape-proteins pandas numpy pyyaml tqdm scikit-learn tensorboard
pip install transformers
pip install torch
```
## Inference
```
from tape import ProteinBertForSequenceClassification, TAPETokenizer
model = ProteinBertForSequenceClassification.from_pretrained("steveyu323/kinbert_v2_long")
``` |