---
tags:
  - protein
  - biology
  - kinase
pipeline_tag: text-classification
---

# Kinase–Substrate Interaction Classifier

Fine-tuned from TAPE ProteinBERT (`bert-base`) on kinase–substrate pairs.

## Input
Concatenated kinase + `<sep>` + substrate amino acid sequences.

## Output
Binary classification: 1 = interaction, 0 = no interaction

## SETUP ENV

```
pip install tensorboard
pip install einops
pip install scikit-learn
pip install plotnine
pip install seaborn
pip install tape-proteins pandas numpy pyyaml tqdm scikit-learn tensorboard
pip install transformers
pip install torch
```

## Inference

```
from tape import ProteinBertForSequenceClassification, TAPETokenizer
model = ProteinBertForSequenceClassification.from_pretrained("steveyu323/kinbert_v2_long")
```