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53a6def | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 | # Processing
This folder contains scripts for processing raw EHR data, along with the mappings required to carry out the initial processing steps.
Before running any scripts, first create a directory called 'Model_E_Extracts' within the 'S:/data' directory.
_NB: The below processing scripts can be run in any order._
### Admissions
- process_admissions.py - SMR01 COPD/Resp admissions per patient per year
- process_comorbidities.py - SMR01 comorbidities per patient per year
### Demographics
- process_demographics.py - DOB, sex, marital status and SIMD data
### Labs
- process_labs.py - lab test values per patient per year, taking the median lab test value from the 2 years prior
### Prescribing
- process_prescribing.py - prescriptions per patient per year
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