# Processing

This folder contains scripts for processing raw EHR data, along with the mappings required to carry out the initial processing steps.

Before running any scripts, first create a directory called 'Model_E_Extracts' within the 'S:/data' directory.

_NB: The below processing scripts can be run in any order._

### Admissions

- process_admissions.py - SMR01 COPD/Resp admissions per patient per year
- process_comorbidities.py - SMR01 comorbidities per patient per year

### Demographics

- process_demographics.py - DOB, sex, marital status and SIMD data

### Labs

- process_labs.py - lab test values per patient per year, taking the median lab test value from the 2 years prior

### Prescribing

- process_prescribing.py - prescriptions per patient per year