| { | |
| "data": { | |
| "tokenizer_path": "tokenizer", | |
| "protein_h5": "PLACEHOLDER.h5", | |
| "max_generated_rna_bp": 101, | |
| "append_eos_token": true | |
| }, | |
| "model": { | |
| "use_FiLM": false, | |
| "use_AdaLN": true, | |
| "use_gated_bias": false, | |
| "use_protein_conditioning_attention": true, | |
| "protein_dim": 2560, | |
| "num_hidden_layers": 12 | |
| }, | |
| "train": { | |
| "use_bf16": true, | |
| "t_eps": 0.001 | |
| }, | |
| "sample": { | |
| "checkpoint": "PLACEHOLDER.pt", | |
| "output_dir": "PLACEHOLDER_OUT", | |
| "num_sequences_per_rbp": 256, | |
| "length_bp": 80, | |
| "min_rna_bp": 12, | |
| "steps": 50, | |
| "temperature": 1.0, | |
| "top_p": 0.90, | |
| "top_k": 0, | |
| "alg": "maskgit_plus", | |
| "alg_temp": 0.8, | |
| "variable_length": true | |
| } | |
| } | |