#!/usr/bin/env python3 """HEST-1K for reference timm pathology FMs (UNI/UNI2/gigapath/Virchow2). run_hest_3way와 동일 프로토콜: 224px, ImageNet norm, CLS 임베딩, PCA256+ridge, 9 task 평균 Pearson. (참조모델 CRC/BACH/HCC와 동일하게 CLS만 사용 — Virchow2도 CLS 1280.) """ import argparse, os, sys import torch from torchvision import transforms ROOT = os.environ.get("OPENPATH_ROOT", os.path.dirname(os.path.dirname(os.path.abspath(__file__)))) BENCH = os.environ.get("HEST_BENCH_ROOT", f"{ROOT}/data/eva/hest_bench") ALL = ["IDC", "PRAD", "PAAD", "SKCM", "COAD", "READ", "CCRCC", "LUNG", "LYMPH_IDC"] eval_tf = transforms.Compose([ transforms.Resize(224), transforms.CenterCrop(224), transforms.ToTensor(), transforms.Normalize(mean=(0.485, 0.456, 0.406), std=(0.229, 0.224, 0.225)), ]) def main(): ap = argparse.ArgumentParser() ap.add_argument("--backbone", required=True, choices=["uni", "uni2", "gigapath", "virchow2"]) ap.add_argument("--exp-code", required=True) ap.add_argument("tasks", nargs="*") args = ap.parse_args() sys.path.insert(0, os.path.dirname(os.path.abspath(__file__))) import openpath_eva_backbone as B fn = {"uni": B.build_uni, "uni2": B.build_uni2, "gigapath": B.build_gigapath, "virchow2": B.build_virchow2}[args.backbone] model = fn().cuda().eval() from hest.bench import benchmark tasks = args.tasks or ALL print(f"[hest-ref] backbone={args.backbone} exp={args.exp_code} tasks={tasks}", flush=True) dataset_perfs, perf_per_enc = benchmark( model, eval_tf, torch.float32, exp_code=args.exp_code, datasets=tasks, bench_data_root=BENCH, embed_dataroot=os.environ.get("HEST_EMBED_ROOT", f"eval/ST_data_emb_{args.exp_code}"), dimreduce="PCA", latent_dim=256, method="ridge", normalize=True, ) print(f"=== HEST per-encoder avg Pearson [{args.exp_code}] ===", perf_per_enc, flush=True) if __name__ == "__main__": main()