---
license: cc-by-nc-4.0
---


# FlashPPI: Linear-time prediction of proteome-scale microbial protein interactions

This model is used for benchmarking on the held out E. coli benchmark set (https://huggingface.co/datasets/tattabio/ecoli_pdb_benchmark). See the paper details on benchmarking.

The model trained on the full set is available here: https://huggingface.co/tattabio/flashppi.


## Citing 
If you use FlashPPI or our datasets in your research, please cite:

```
@article {Cornman2026FlashPPI,
	author = {Cornman, Andre and Tranzillo, Matt and Zulaybar, Nicolo G and Bouzit, Imane and Hwang, Yunha},
	title = {Linear-time prediction of proteome-scale microbial protein interactions},
	year = {2026},
	doi = {10.64898/2026.03.01.708874},
	publisher = {Cold Spring Harbor Laboratory},
	URL = {https://www.biorxiv.org/content/early/2026/03/02/2026.03.01.708874},
	journal = {bioRxiv}
}
```