Alejandro Velez
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README.md
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license: apache-2.0
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datasets:
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- ctheodoris/Genecorpus-30M
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The TDC Model Hub Transformers API is under development. In the meantime, we highly recommend using the native HF Transformers library and original Geneformer repo to run inference.
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```python
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# Use a pipeline as a high-level helper
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from transformers import pipeline
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pipe = pipeline("fill-mask", model="ctheodoris/Geneformer")
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```
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```python
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# Load model directly
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from transformers import AutoTokenizer, AutoModelForMaskedLM
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tokenizer = AutoTokenizer.from_pretrained("ctheodoris/Geneformer")
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model = AutoModelForMaskedLM.from_pretrained("ctheodoris/Geneformer")
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```
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For further details see: https://huggingface.co/ctheodoris/Geneformer
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=======
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datasets: ctheodoris/Genecorpus-30M
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license: apache-2.0
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tags:
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- single-cell
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- genomics
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# Citations
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- C V Theodoris#, L Xiao, A Chopra, M D Chaffin, Z R Al Sayed, M C Hill, H Mantineo, E Brydon, Z Zeng, X S Liu, P T Ellinor#. Transfer learning enables predictions in network biology. _**Nature**_, 31 May 2023. (#co-corresponding authors)
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- H Chen*, M S Venkatesh*, J Gomez Ortega, S V Mahesh, T Nandi, R Madduri, K Pelka†, C V Theodoris†#. Quantized multi-task learning for context-specific representations of gene network dynamics. _**bioRxiv**_, 19 Aug 2024. (*co-first authors, †co-senior authors, #corresponding author)
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license: apache-2.0
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datasets: ctheodoris/Genecorpus-30M
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tags:
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- single-cell
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- genomics
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# Citations
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- C V Theodoris#, L Xiao, A Chopra, M D Chaffin, Z R Al Sayed, M C Hill, H Mantineo, E Brydon, Z Zeng, X S Liu, P T Ellinor#. Transfer learning enables predictions in network biology. _**Nature**_, 31 May 2023. (#co-corresponding authors)
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- H Chen*, M S Venkatesh*, J Gomez Ortega, S V Mahesh, T Nandi, R Madduri, K Pelka†, C V Theodoris†#. Quantized multi-task learning for context-specific representations of gene network dynamics. _**bioRxiv**_, 19 Aug 2024. (*co-first authors, †co-senior authors, #corresponding author)
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