File size: 30,238 Bytes
9af5e69 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867 868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885 886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903 904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921 922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939 940 941 942 943 944 945 946 947 948 949 950 951 952 | # type: ignore
import inspect
from enum import Enum
from functools import partial
from typing import Optional, Sequence, Tuple, Union
import numpy as np
import torch.nn as nn
### Inferno parts (adapted from inferno 0.4.2)
def assert_(condition, message="", exception_type=AssertionError):
"""Like assert, but with arbitrary exception types."""
if not condition:
raise exception_type(message)
# proxy for generated classes in inferno
generated_inferno_classes = {}
def partial_cls(base_cls, name, fix=None, default=None):
# helper function
def insert_if_not_present(dict_a, dict_b):
for kw, val in dict_b.items():
if kw not in dict_a:
dict_a[kw] = val
return dict_a
# helper function
def insert_call_if_present(dict_a, dict_b, callback):
for kw, val in dict_b.items():
if kw not in dict_a:
dict_a[kw] = val
else:
callback(kw)
return dict_a
# helper class
class PartialCls(object):
def __init__(self, base_cls, name, fix=None, default=None):
self.base_cls = base_cls
self.name = name
self.fix = [fix, {}][fix is None]
self.default = [default, {}][default is None]
if self.fix.keys() & self.default.keys():
raise TypeError("fix and default share keys")
# remove binded kw
self._allowed_kw = self._get_allowed_kw()
def _get_allowed_kw(self):
argspec = inspect.getfullargspec(base_cls.__init__)
args, varargs, varkw, defaults, kwonlyargs, kwonlydefaults, annotations = (
argspec
)
if varargs is not None:
raise TypeError(
"partial_cls can only be used if __init__ has no varargs"
)
if varkw is not None:
raise TypeError("partial_cls can only be used if __init__ has no varkw")
if kwonlyargs is not None and kwonlyargs != []:
raise TypeError("partial_cls can only be used without kwonlyargs")
if args is None or len(args) < 1:
raise TypeError("seems like self is missing")
return [kw for kw in args[1:] if kw not in self.fix]
def _build_kw(self, args, kwargs):
# handle *args
if len(args) > len(self._allowed_kw):
raise TypeError("to many arguments")
all_args = {}
for arg, akw in zip(args, self._allowed_kw):
all_args[akw] = arg
# handle **kwargs
intersection = self.fix.keys() & kwargs.keys()
if len(intersection) >= 1:
kw = intersection.pop()
raise TypeError(
"`{}.__init__` got unexpected keyword argument '{}'".format(
name, kw
)
)
def raise_cb(kw):
raise TypeError(
"{}.__init__ got multiple values for argument '{}'".format(name, kw)
)
all_args = insert_call_if_present(all_args, kwargs, raise_cb)
# handle fixed arguments
def raise_cb(kw):
raise TypeError()
all_args = insert_call_if_present(all_args, self.fix, raise_cb)
# handle defaults
all_args = insert_if_not_present(all_args, self.default)
# handle fixed
all_args.update(self.fix)
return all_args
def build_cls(self):
def new_init(self_of_new_cls, *args, **kwargs):
combined_args = self._build_kw(args=args, kwargs=kwargs)
# call base cls init
super(self_of_new_cls.__class__, self_of_new_cls).__init__(
**combined_args
)
return type(name, (self.base_cls,), {"__init__": new_init})
return PartialCls(
base_cls=base_cls, name=name, fix=fix, default=default
).build_cls()
def register_partial_cls(base_cls, name, fix=None, default=None):
generatedClass = partial_cls(base_cls=base_cls, name=name, fix=fix, default=default)
generated_inferno_classes[generatedClass.__name__] = generatedClass
class Initializer(object):
"""
Base class for all initializers.
"""
# TODO Support LSTMs and GRUs
VALID_LAYERS = {
"Conv1d",
"Conv2d",
"Conv3d",
"ConvTranspose1d",
"ConvTranspose2d",
"ConvTranspose3d",
"Linear",
"Bilinear",
"Embedding",
}
def __call__(self, module):
module_class_name = module.__class__.__name__
if module_class_name in self.VALID_LAYERS:
# Apply to weight and bias
try:
if hasattr(module, "weight"):
self.call_on_weight(module.weight.data)
except NotImplementedError:
# Don't cry if it's not implemented
pass
try:
if hasattr(module, "bias"):
self.call_on_bias(module.bias.data)
except NotImplementedError:
pass
return module
def call_on_bias(self, tensor):
return self.call_on_tensor(tensor)
def call_on_weight(self, tensor):
return self.call_on_tensor(tensor)
def call_on_tensor(self, tensor):
raise NotImplementedError
@classmethod
def initializes_weight(cls):
return "call_on_tensor" in cls.__dict__ or "call_on_weight" in cls.__dict__
@classmethod
def initializes_bias(cls):
return "call_on_tensor" in cls.__dict__ or "call_on_bias" in cls.__dict__
class Initialization(Initializer):
def __init__(self, weight_initializer=None, bias_initializer=None):
if weight_initializer is None:
self.weight_initializer = Initializer()
else:
if isinstance(weight_initializer, Initializer):
assert weight_initializer.initializes_weight()
self.weight_initializer = weight_initializer
elif isinstance(weight_initializer, str):
init_function = getattr(nn.init, weight_initializer, None)
assert init_function is not None
self.weight_initializer = WeightInitFunction(
init_function=init_function
)
else:
# Provison for weight_initializer to be a function
assert callable(weight_initializer)
self.weight_initializer = WeightInitFunction(
init_function=weight_initializer
)
if bias_initializer is None:
self.bias_initializer = Initializer()
else:
if isinstance(bias_initializer, Initializer):
assert bias_initializer.initializes_bias
self.bias_initializer = bias_initializer
elif isinstance(bias_initializer, str):
init_function = getattr(nn.init, bias_initializer, None)
assert init_function is not None
self.bias_initializer = BiasInitFunction(init_function=init_function)
else:
assert callable(bias_initializer)
self.bias_initializer = BiasInitFunction(init_function=bias_initializer)
def call_on_weight(self, tensor):
return self.weight_initializer.call_on_weight(tensor)
def call_on_bias(self, tensor):
return self.bias_initializer.call_on_bias(tensor)
class WeightInitFunction(Initializer):
def __init__(self, init_function, *init_function_args, **init_function_kwargs):
super(WeightInitFunction, self).__init__()
assert callable(init_function)
self.init_function = init_function
self.init_function_args = init_function_args
self.init_function_kwargs = init_function_kwargs
def call_on_weight(self, tensor):
return self.init_function(
tensor, *self.init_function_args, **self.init_function_kwargs
)
class BiasInitFunction(Initializer):
def __init__(self, init_function, *init_function_args, **init_function_kwargs):
super(BiasInitFunction, self).__init__()
assert callable(init_function)
self.init_function = init_function
self.init_function_args = init_function_args
self.init_function_kwargs = init_function_kwargs
def call_on_bias(self, tensor):
return self.init_function(
tensor, *self.init_function_args, **self.init_function_kwargs
)
class TensorInitFunction(Initializer):
def __init__(self, init_function, *init_function_args, **init_function_kwargs):
super(TensorInitFunction, self).__init__()
assert callable(init_function)
self.init_function = init_function
self.init_function_args = init_function_args
self.init_function_kwargs = init_function_kwargs
def call_on_tensor(self, tensor):
return self.init_function(
tensor, *self.init_function_args, **self.init_function_kwargs
)
class Constant(Initializer):
"""Initialize with a constant."""
def __init__(self, constant):
self.constant = constant
def call_on_tensor(self, tensor):
tensor.fill_(self.constant)
return tensor
class NormalWeights(Initializer):
"""
Initialize weights with random numbers drawn from the normal distribution at
`mean` and `stddev`.
"""
def __init__(self, mean=0.0, stddev=1.0, sqrt_gain_over_fan_in=None):
self.mean = mean
self.stddev = stddev
self.sqrt_gain_over_fan_in = sqrt_gain_over_fan_in
def compute_fan_in(self, tensor):
if tensor.dim() == 2:
return tensor.size(1)
else:
return np.prod(list(tensor.size())[1:])
def call_on_weight(self, tensor):
# Compute stddev if required
if self.sqrt_gain_over_fan_in is not None:
stddev = self.stddev * np.sqrt(
self.sqrt_gain_over_fan_in / self.compute_fan_in(tensor)
)
else:
stddev = self.stddev
# Init
tensor.normal_(self.mean, stddev)
class OrthogonalWeightsZeroBias(Initialization):
def __init__(self, orthogonal_gain=1.0):
# This prevents a deprecated warning in Pytorch 0.4+
orthogonal = getattr(nn.init, "orthogonal_", nn.init.orthogonal)
super(OrthogonalWeightsZeroBias, self).__init__(
weight_initializer=partial(orthogonal, gain=orthogonal_gain),
bias_initializer=Constant(0.0),
)
class KaimingNormalWeightsZeroBias(Initialization):
def __init__(self, relu_leakage=0):
# This prevents a deprecated warning in Pytorch 0.4+
kaiming_normal = getattr(nn.init, "kaiming_normal_", nn.init.kaiming_normal)
super(KaimingNormalWeightsZeroBias, self).__init__(
weight_initializer=partial(kaiming_normal, a=relu_leakage),
bias_initializer=Constant(0.0),
)
class SELUWeightsZeroBias(Initialization):
def __init__(self):
super(SELUWeightsZeroBias, self).__init__(
weight_initializer=NormalWeights(sqrt_gain_over_fan_in=1.0),
bias_initializer=Constant(0.0),
)
class ELUWeightsZeroBias(Initialization):
def __init__(self):
super(ELUWeightsZeroBias, self).__init__(
weight_initializer=NormalWeights(sqrt_gain_over_fan_in=1.5505188080679277),
bias_initializer=Constant(0.0),
)
class BatchNormND(nn.Module):
def __init__(
self,
dim,
num_features,
eps=1e-5,
momentum=0.1,
affine=True,
track_running_stats=True,
):
super(BatchNormND, self).__init__()
assert dim in [1, 2, 3]
self.bn = getattr(nn, "BatchNorm{}d".format(dim))(
num_features=num_features,
eps=eps,
momentum=momentum,
affine=affine,
track_running_stats=track_running_stats,
)
def forward(self, x):
return self.bn(x)
class ConvActivation(nn.Module):
"""Convolutional layer with 'SAME' padding by default followed by an activation."""
def __init__(
self,
in_channels,
out_channels,
kernel_size,
dim,
activation,
stride=1,
dilation=1,
groups=None,
depthwise=False,
bias=True,
deconv=False,
initialization=None,
valid_conv=False,
):
super(ConvActivation, self).__init__()
# Validate dim
assert_(
dim in [1, 2, 3],
"`dim` must be one of [1, 2, 3], got {}.".format(dim),
)
self.dim = dim
# Check if depthwise
if depthwise:
# We know that in_channels == out_channels, but we also want a consistent API.
# As a compromise, we allow that out_channels be None or 'auto'.
out_channels = (
in_channels if out_channels in [None, "auto"] else out_channels
)
assert_(
in_channels == out_channels,
"For depthwise convolutions, number of input channels (given: {}) "
"must equal the number of output channels (given {}).".format(
in_channels, out_channels
),
ValueError,
)
assert_(
groups is None or groups == in_channels,
"For depthwise convolutions, groups (given: {}) must "
"equal the number of channels (given: {}).".format(groups, in_channels),
)
groups = in_channels
else:
groups = 1 if groups is None else groups
self.depthwise = depthwise
if valid_conv:
self.conv = getattr(nn, "Conv{}d".format(self.dim))(
in_channels=in_channels,
out_channels=out_channels,
kernel_size=kernel_size,
stride=stride,
dilation=dilation,
groups=groups,
bias=bias,
)
elif not deconv:
# Get padding
padding = self.get_padding(kernel_size, dilation)
self.conv = getattr(nn, "Conv{}d".format(self.dim))(
in_channels=in_channels,
out_channels=out_channels,
kernel_size=kernel_size,
padding=padding,
stride=stride,
dilation=dilation,
groups=groups,
bias=bias,
)
else:
self.conv = getattr(nn, "ConvTranspose{}d".format(self.dim))(
in_channels=in_channels,
out_channels=out_channels,
kernel_size=kernel_size,
stride=stride,
dilation=dilation,
groups=groups,
bias=bias,
)
if initialization is None:
pass
elif isinstance(initialization, Initializer):
self.conv.apply(initialization)
else:
raise NotImplementedError
if isinstance(activation, str):
self.activation = getattr(nn, activation)()
elif isinstance(activation, nn.Module):
self.activation = activation
elif activation is None:
self.activation = None
else:
raise NotImplementedError
def forward(self, input):
conved = self.conv(input)
if self.activation is not None:
activated = self.activation(conved)
else:
# No activation
activated = conved
return activated
def _pair_or_triplet(self, object_):
if isinstance(object_, (list, tuple)):
assert len(object_) == self.dim
return object_
else:
object_ = [object_] * self.dim
return object_
def _get_padding(self, _kernel_size, _dilation):
assert isinstance(_kernel_size, int)
assert isinstance(_dilation, int)
assert _kernel_size % 2 == 1
return ((_kernel_size - 1) // 2) * _dilation
def get_padding(self, kernel_size, dilation):
kernel_size = self._pair_or_triplet(kernel_size)
dilation = self._pair_or_triplet(dilation)
padding = [
self._get_padding(_kernel_size, _dilation)
for _kernel_size, _dilation in zip(kernel_size, dilation)
]
return tuple(padding)
# for consistency
ConvActivationND = ConvActivation
class _BNReLUSomeConv(object):
def forward(self, input):
normed = self.batchnorm(input)
activated = self.activation(normed)
conved = self.conv(activated)
return conved
class BNReLUConvBaseND(_BNReLUSomeConv, ConvActivation):
def __init__(
self,
in_channels,
out_channels,
kernel_size,
dim,
stride=1,
dilation=1,
deconv=False,
):
super(BNReLUConvBaseND, self).__init__(
in_channels=in_channels,
out_channels=out_channels,
kernel_size=kernel_size,
dim=dim,
stride=stride,
activation=nn.ReLU(inplace=True),
dilation=dilation,
deconv=deconv,
initialization=KaimingNormalWeightsZeroBias(0),
)
self.batchnorm = BatchNormND(dim, in_channels)
def _register_bnr_conv_cls(conv_name, fix=None, default=None):
if fix is None:
fix = {}
if default is None:
default = {}
for dim in [1, 2, 3]:
cls_name = "BNReLU{}ND".format(conv_name)
register_partial_cls(BNReLUConvBaseND, cls_name, fix=fix, default=default)
for dim in [1, 2, 3]:
cls_name = "BNReLU{}{}D".format(conv_name, dim)
register_partial_cls(
BNReLUConvBaseND, cls_name, fix={**fix, "dim": dim}, default=default
)
def _register_conv_cls(conv_name, fix=None, default=None):
if fix is None:
fix = {}
if default is None:
default = {}
# simple conv activation
activations = ["ReLU", "ELU", "Sigmoid", "SELU", ""]
init_map = {"ReLU": KaimingNormalWeightsZeroBias, "SELU": SELUWeightsZeroBias}
for activation_str in activations:
cls_name = cls_name = "{}{}ND".format(conv_name, activation_str)
initialization_cls = init_map.get(activation_str, OrthogonalWeightsZeroBias)
if activation_str == "":
activation = None
_fix = {**fix}
_default = {"activation": None}
elif activation_str == "SELU":
activation = nn.SELU(inplace=True)
_fix = {**fix, "activation": activation}
_default = {**default}
else:
activation = activation_str
_fix = {**fix, "activation": activation}
_default = {**default}
register_partial_cls(
ConvActivation,
cls_name,
fix=_fix,
default={**_default, "initialization": initialization_cls()},
)
for dim in [1, 2, 3]:
cls_name = "{}{}{}D".format(conv_name, activation_str, dim)
register_partial_cls(
ConvActivation,
cls_name,
fix={**_fix, "dim": dim},
default={**_default, "initialization": initialization_cls()},
)
_register_conv_cls("Conv")
_register_conv_cls("ValidConv", fix=dict(valid_conv=True))
Conv2D = generated_inferno_classes["Conv2D"]
ValidConv3D = generated_inferno_classes["ValidConv3D"]
### HyLFM architecture
class Crop(nn.Module):
def __init__(self, *slices: slice):
super().__init__()
self.slices = slices
def extra_repr(self):
return str(self.slices)
def forward(self, input):
return input[self.slices]
class ChannelFromLightField(nn.Module):
def __init__(self, nnum: int):
super().__init__()
self.nnum = nnum
def forward(self, tensor):
assert len(tensor.shape) == 4, tensor.shape
b, c, x, y = tensor.shape
assert c == 1
assert x % self.nnum == 0, (x, self.nnum)
assert y % self.nnum == 0, (y, self.nnum)
return (
tensor.reshape(b, x // self.nnum, self.nnum, y // self.nnum, self.nnum)
.transpose(1, 2)
.transpose(2, 4)
.transpose(3, 4)
.reshape(b, self.nnum**2, x // self.nnum, y // self.nnum)
)
class ResnetBlock(nn.Module):
def __init__(
self,
in_n_filters,
n_filters,
kernel_size=(3, 3),
batch_norm=False,
conv_per_block=2,
valid: bool = False,
activation: str = "ReLU",
):
super().__init__()
if batch_norm and activation != "ReLU":
raise NotImplementedError("batch_norm with non ReLU activation")
assert isinstance(kernel_size, tuple), kernel_size
assert conv_per_block >= 2
self.debug = False # sys.gettrace() is not None
Conv = generated_inferno_classes[
f"{'BNReLU' if batch_norm else ''}{'Valid' if valid else ''}Conv{'' if batch_norm else activation}{len(kernel_size)}D"
]
FinalConv = generated_inferno_classes[
f"{'BNReLU' if batch_norm else ''}{'Valid' if valid else ''}Conv{len(kernel_size)}D"
]
layers = []
layers.append(
Conv(
in_channels=in_n_filters,
out_channels=n_filters,
kernel_size=kernel_size,
)
)
for _ in range(conv_per_block - 2):
layers.append(Conv(n_filters, n_filters, kernel_size))
layers.append(FinalConv(n_filters, n_filters, kernel_size))
self.block = nn.Sequential(*layers)
if n_filters != in_n_filters:
ProjConv = generated_inferno_classes[f"Conv{len(kernel_size)}D"]
self.projection_layer = ProjConv(in_n_filters, n_filters, kernel_size=1)
else:
self.projection_layer = None
if valid:
crop_each_side = [conv_per_block * (ks // 2) for ks in kernel_size]
self.crop = Crop(..., *[slice(c, -c) for c in crop_each_side])
else:
self.crop = None
self.relu = nn.ReLU()
# determine shrinkage
# self.shrinkage = (1, 1) + tuple([conv_per_block * (ks - 1) for ks in kernel_size])
def forward(self, input):
x = self.block(input)
if self.crop is not None:
input = self.crop(input)
if self.projection_layer is None:
x = x + input
else:
projected = self.projection_layer(input)
x = x + projected
x = self.relu(x)
return x
class HyLFM_Net(nn.Module):
class InitName(str, Enum):
uniform_ = "uniform"
normal_ = "normal"
constant_ = "constant"
eye_ = "eye"
dirac_ = "dirac"
xavier_uniform_ = "xavier_uniform"
xavier_normal_ = "xavier_normal"
kaiming_uniform_ = "kaiming_uniform"
kaiming_normal_ = "kaiming_normal"
orthogonal_ = "orthogonal"
sparse_ = "sparse"
def __init__(
self,
*,
z_out: int,
nnum: int,
kernel2d: int = 3,
conv_per_block2d: int = 2,
c_res2d: Sequence[Union[int, str]] = (488, 488, "u244", 244),
last_kernel2d: int = 1,
c_in_3d: int = 7,
kernel3d: int = 3,
conv_per_block3d: int = 2,
c_res3d: Sequence[str] = (7, "u7", 7, 7),
init_fn: Union[InitName, str] = InitName.xavier_uniform_.value,
final_activation: Optional[str] = None,
):
super().__init__()
self.channel_from_lf = ChannelFromLightField(nnum=nnum)
init_fn = self.InitName(init_fn)
if hasattr(nn.init, f"{init_fn.value}_"):
# prevents deprecation warning
init_fn = getattr(nn.init, f"{init_fn.value}_")
else:
init_fn = getattr(nn.init, init_fn.value)
self.c_res2d = list(c_res2d)
self.c_res3d = list(c_res3d)
c_res3d = c_res3d
self.nnum = nnum
self.z_out = z_out
if kernel3d != 3:
raise NotImplementedError("z_out expansion for other res3d kernel")
dz = 2 * conv_per_block3d * (kernel3d // 2)
for c in c_res3d:
if isinstance(c, int) or not c.startswith("u"):
z_out += dz
# z_out += 4 * (len(c_res3d) - 2 * sum([layer == "u" for layer in c_res3d])) # add z_out for valid 3d convs
assert (
c_res2d[-1] != "u"
), "missing # output channels for upsampling in 'c_res2d'"
assert (
c_res3d[-1] != "u"
), "missing # output channels for upsampling in 'c_res3d'"
res2d = []
c_in = nnum**2
c_out = c_in
for i in range(len(c_res2d)):
if not isinstance(c_res2d[i], int) and c_res2d[i].startswith("u"):
c_out = int(c_res2d[i][1:])
res2d.append(
nn.ConvTranspose2d(
in_channels=c_in,
out_channels=c_out,
kernel_size=2,
stride=2,
padding=0,
output_padding=0,
)
)
else:
c_out = int(c_res2d[i])
res2d.append(
ResnetBlock(
in_n_filters=c_in,
n_filters=c_out,
kernel_size=(kernel2d, kernel2d),
valid=False,
conv_per_block=conv_per_block2d,
)
)
c_in = c_out
self.res2d = nn.Sequential(*res2d)
if "gain" in inspect.signature(init_fn).parameters:
init_fn_conv2d = partial(init_fn, gain=nn.init.calculate_gain("relu"))
else:
init_fn_conv2d = init_fn
init = Initialization(
weight_initializer=init_fn_conv2d, bias_initializer=Constant(0.0)
)
self.conv2d = Conv2D(
c_out,
z_out * c_in_3d,
last_kernel2d,
activation="ReLU",
initialization=init,
)
self.c2z = lambda ipt, ip3=c_in_3d: ipt.view(
ipt.shape[0], ip3, z_out, *ipt.shape[2:]
)
res3d = []
c_in = c_in_3d
c_out = c_in
for i in range(len(c_res3d)):
if not isinstance(c_res3d[i], int) and c_res3d[i].startswith("u"):
c_out = int(c_res3d[i][1:])
res3d.append(
nn.ConvTranspose3d(
in_channels=c_in,
out_channels=c_out,
kernel_size=(3, 2, 2),
stride=(1, 2, 2),
padding=(1, 0, 0),
output_padding=0,
)
)
else:
c_out = int(c_res3d[i])
res3d.append(
ResnetBlock(
in_n_filters=c_in,
n_filters=c_out,
kernel_size=(kernel3d, kernel3d, kernel3d),
valid=True,
conv_per_block=conv_per_block3d,
)
)
c_in = c_out
self.res3d = nn.Sequential(*res3d)
if "gain" in inspect.signature(init_fn).parameters:
init_fn_conv3d = partial(init_fn, gain=nn.init.calculate_gain("linear"))
else:
init_fn_conv3d = init_fn
init = Initialization(
weight_initializer=init_fn_conv3d, bias_initializer=Constant(0.0)
)
self.conv3d = ValidConv3D(c_out, 1, (1, 1, 1), initialization=init)
if final_activation is None:
self.final_activation = None
elif final_activation == "sigmoid":
self.final_activation = nn.Sigmoid()
else:
raise NotImplementedError(final_activation)
def forward(self, x):
x = self.channel_from_lf(x)
x = self.res2d(x)
x = self.conv2d(x)
x = self.c2z(x)
x = self.res3d(x)
x = self.conv3d(x)
if self.final_activation is not None:
x = self.final_activation(x)
return x
def get_scale(self, ipt_shape: Optional[Tuple[int, int]] = None) -> int:
s = max(
1,
2
* sum(
isinstance(res2d, str) and res2d.startswith("u")
for res2d in self.c_res2d
),
) * max(
1,
2
* sum(
isinstance(res3d, str) and res3d.startswith("u")
for res3d in self.c_res3d
),
)
return s
def get_shrink(self, ipt_shape: Optional[Tuple[int, int]] = None) -> int:
s = 0
for res in self.c_res3d:
if isinstance(res, str) and res.startswith("u"):
s *= 2
else:
s += 2
return s
def get_output_shape(self, ipt_shape: Tuple[int, int]) -> Tuple[int, int, int]:
scale = self.get_scale(ipt_shape)
shrink = self.get_shrink(ipt_shape)
return (self.z_out,) + tuple(i * scale - 2 * shrink for i in ipt_shape)
if __name__ == "__main__":
# Example usage
model = HyLFM_Net(
z_out=9,
nnum=5,
kernel2d=3,
conv_per_block2d=2,
c_res2d=(12, 14, "u14", 8),
last_kernel2d=1,
c_in_3d=7,
kernel3d=3,
conv_per_block3d=2,
c_res3d=(7, "u7", 7, 7),
init_fn="xavier_uniform",
final_activation="sigmoid",
)
print(model)
print(model.get_output_shape((64, 64)))
|