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Corpus-30M/panels/Xenium_hBrain_v1_metadata.csv ADDED
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1
+ Genes,Ensembl_ID,Num_Probesets,Codewords,Annotation
2
+ ABCC9,ENSG00000069431,8,1,VLMC
3
+ ADAMTS12,ENSG00000151388,8,1,VLMC
4
+ ADAMTS16,ENSG00000145536,8,1,L4 IT
5
+ ADAMTS3,ENSG00000156140,8,1,L6 IT
6
+ ADRA1A,ENSG00000120907,8,1,Sncg
7
+ ADRA1B,ENSG00000170214,8,1,Sncg
8
+ AIF1,ENSG00000204472,7,1,Glioblastoma (TME)
9
+ ALK,ENSG00000171094,8,1,Chandelier
10
+ ANGPT1,ENSG00000154188,8,1,Pax6
11
+ ANK1,ENSG00000029534,8,1,Chandelier
12
+ ANKRD18A,ENSG00000180071,8,1,Sst Chodl
13
+ ANO3,ENSG00000134343,8,1,VLMC
14
+ ANXA1,ENSG00000135046,8,1,Glioblastoma (Cancer cells)
15
+ APOE,ENSG00000130203,2,1,Microglia-PVM
16
+ APP,ENSG00000142192,4,1,Broad
17
+ AQP4,ENSG00000171885,8,1,Astrocyte
18
+ ARHGAP24,ENSG00000138639,8,1,Microglia-PVM
19
+ ATP2C2,ENSG00000064270,8,1,L5/6 NP
20
+ B4GALNT1,ENSG00000135454,8,1,Glioblastoma (Cancer cells)
21
+ BCAN,ENSG00000132692,4,1,Glioblastoma (Cancer cells)
22
+ BRINP3,ENSG00000162670,8,1,OPC
23
+ BTBD11,ENSG00000151136,8,1,Pvalb
24
+ C1QL3,ENSG00000165985,8,1,L6 IT
25
+ C1orf162,ENSG00000143110,8,1,Glioblastoma (TME)
26
+ CALCRL,ENSG00000064989,8,1,OPC
27
+ CAPG,ENSG00000042493,6,1,Glioblastoma (TME)
28
+ CAPN3,ENSG00000092529,8,1,Oligodendrocyte
29
+ CAV1,ENSG00000105974,8,1,Glioblastoma (Cancer cells)
30
+ CCK,ENSG00000187094,4,1,Pax6
31
+ CCL4,ENSG00000275302,6,1,Microglia-PVM
32
+ CCL5,ENSG00000271503,5,1,Glioblastoma (TME)
33
+ CCNA1,ENSG00000133101,8,1,Proliferation
34
+ CCNB2,ENSG00000157456,8,1,Proliferation
35
+ CD14,ENSG00000170458,4,1,Glioblastoma (TME)
36
+ CD163,ENSG00000177575,4,1,Glioblastoma (TME)
37
+ CD2,ENSG00000116824,8,1,Glioblastoma (TME)
38
+ CD36,ENSG00000135218,8,1,L5/6 NP
39
+ CD3G,ENSG00000160654,8,1,Glioblastoma (TME)
40
+ CD4,ENSG00000010610,8,1,Glioblastoma (TME)
41
+ CD48,ENSG00000117091,8,1,Glioblastoma (TME)
42
+ CD52,ENSG00000169442,4,1,Glioblastoma (TME)
43
+ CD68,ENSG00000129226,6,1,Glioblastoma (TME)
44
+ CD83,ENSG00000112149,8,1,Glioblastoma (TME)
45
+ CD86,ENSG00000114013,8,1,Microglia-PVM
46
+ CDH1,ENSG00000039068,8,1,Oligodendrocyte
47
+ CDH12,ENSG00000154162,8,1,L6 IT Car3
48
+ CDH4,ENSG00000179242,8,1,Pax6
49
+ CDH6,ENSG00000113361,8,1,VLMC
50
+ CDK1,ENSG00000170312,8,1,Proliferation
51
+ CEMIP,ENSG00000103888,8,1,VLMC
52
+ CEMIP2,ENSG00000135048,8,1,Endothelial
53
+ CENPF,ENSG00000117724,8,1,Proliferation
54
+ CHODL,ENSG00000154645,8,1,Glioblastoma (Cancer cells)
55
+ CLDN11,ENSG00000013297,8,1,Oligodendrocyte
56
+ CNDP1,ENSG00000150656,8,1,Oligodendrocyte
57
+ CNTN2,ENSG00000184144,8,1,Oligodendrocyte
58
+ CNTNAP3B,ENSG00000154529,8,1,Chandelier
59
+ COL12A1,ENSG00000111799,8,1,VLMC
60
+ COL25A1,ENSG00000188517,8,1,Sst
61
+ CORO1A,ENSG00000102879,4,1,Glioblastoma (TME)
62
+ CRHBP,ENSG00000145708,8,1,Sst Chodl
63
+ CRYM,ENSG00000103316,8,1,L5/6 NP
64
+ CSPG4,ENSG00000173546,8,1,VLMC
65
+ CTNNA3,ENSG00000183230,8,1,Oligodendrocyte
66
+ CTSH,ENSG00000103811,8,1,Microglia-PVM
67
+ CTSS,ENSG00000163131,8,1,Glioblastoma (TME)
68
+ CUX2,ENSG00000111249,8,1,L2/3 IT
69
+ CX3CR1,ENSG00000168329,8,1,Glioblastoma (TME)
70
+ CXCL14,ENSG00000145824,8,1,Pax6
71
+ CXCR4,ENSG00000121966,8,1,Glioblastoma (TME)
72
+ CYTIP,ENSG00000115165,8,1,Glioblastoma (TME)
73
+ DCN,ENSG00000011465,8,1,VLMC
74
+ DDR2,ENSG00000162733,8,1,Pax6
75
+ DNER,ENSG00000187957,8,1,Lamp5
76
+ EFHD1,ENSG00000115468,8,1,Oligodendrocyte
77
+ EGFR,ENSG00000146648,8,1,Glioblastoma (Cancer cells)
78
+ ELOVL2,ENSG00000197977,8,1,Glioblastoma (Cancer cells)
79
+ ERBB3,ENSG00000065361,8,1,Oligodendrocyte
80
+ ERMN,ENSG00000136541,8,1,Oligodendrocyte
81
+ EYA4,ENSG00000112319,8,1,Lamp5 Lhx6
82
+ FASLG,ENSG00000117560,8,1,Microglia-PVM
83
+ FBLN1,ENSG00000077942,8,1,VLMC
84
+ FCER1G,ENSG00000158869,7,1,Glioblastoma (TME)
85
+ FCGR1A,ENSG00000150337,8,1,Glioblastoma (TME)
86
+ FCGR3A,ENSG00000203747,8,1,Glioblastoma (TME)
87
+ FGFR2,ENSG00000066468,8,1,Oligodendrocyte
88
+ FGFR3,ENSG00000068078,5,1,Astrocyte
89
+ FILIP1,ENSG00000118407,8,1,L6 CT
90
+ FLT1,ENSG00000102755,8,1,Endothelial
91
+ FSTL4,ENSG00000053108,8,1,L4 IT
92
+ GAD1,ENSG00000128683,8,1,Pvalb
93
+ GAD2,ENSG00000136750,8,1,Lamp5 Lhx6
94
+ GAS2L3,ENSG00000139354,8,1,L6 IT Car3
95
+ GJA1,ENSG00000152661,8,1,Astrocyte
96
+ GNLY,ENSG00000115523,5,1,Glioblastoma (TME)
97
+ GPNMB,ENSG00000136235,8,1,Glioblastoma (TME)
98
+ GPR183,ENSG00000169508,8,1,Glioblastoma (TME)
99
+ GPR34,ENSG00000171659,8,1,Glioblastoma (TME)
100
+ GZMA,ENSG00000145649,8,1,Glioblastoma (TME)
101
+ HES1,ENSG00000114315,7,1,Glioblastoma (Cancer cells)
102
+ HHATL,ENSG00000010282,8,1,Oligodendrocyte
103
+ HILPDA,ENSG00000135245,8,1,Glioblastoma (Cancer cells)
104
+ HLA-DMB,ENSG00000242574,8,1,Glioblastoma (TME)
105
+ HLA-DQA1,ENSG00000196735,8,1,Microglia-PVM
106
+ HS3ST2,ENSG00000122254,8,1,L6 CT
107
+ HS3ST4,ENSG00000182601,8,1,L6 CT
108
+ HTR2A,ENSG00000102468,8,1,L5 IT
109
+ HTR2C,ENSG00000147246,8,1,L5/6 NP
110
+ IDH1,ENSG00000138413,8,1,Glioblastoma (Cancer cells)
111
+ IDH2,ENSG00000182054,8,1,Glioblastoma (Cancer cells)
112
+ IDO1,ENSG00000131203,8,1,Glioblastoma (TME)
113
+ IFITM3,ENSG00000142089,3,1,Microglia-PVM
114
+ IGFBP3,ENSG00000146674,8,1,Glioblastoma (Cancer cells)
115
+ IGFBP4,ENSG00000141753,6,1,VLMC
116
+ IGFBP5,ENSG00000115461,8,1,Glioblastoma (Cancer cells)
117
+ IL7R,ENSG00000168685,8,1,Glioblastoma (TME)
118
+ ITGA8,ENSG00000077943,8,1,OPC
119
+ ITGAM,ENSG00000169896,8,1,Microglia-PVM
120
+ ITGAX,ENSG00000140678,8,1,Microglia-PVM
121
+ ITGB2,ENSG00000160255,8,1,Glioblastoma (TME)
122
+ KCNH5,ENSG00000140015,8,1,L6 CT
123
+ KIT,ENSG00000157404,8,1,Proliferation
124
+ KLF2,ENSG00000127528,6,1,Glioblastoma (TME)
125
+ KLF4,ENSG00000136826,8,1,Glioblastoma (TME)
126
+ KLK6,ENSG00000167755,6,1,Oligodendrocyte
127
+ KLRB1,ENSG00000111796,8,1,Glioblastoma (TME)
128
+ LAMA2,ENSG00000196569,8,1,VLMC
129
+ LAMP5,ENSG00000125869,8,1,Lamp5 Lhx6
130
+ LHX6,ENSG00000106852,8,1,Chandelier
131
+ LOX,ENSG00000113083,8,1,Glioblastoma (Cancer cells)
132
+ LRRK1,ENSG00000154237,8,1,Microglia-PVM
133
+ LRRK2,ENSG00000188906,8,1,OPC
134
+ LY86,ENSG00000112799,8,1,Glioblastoma (TME)
135
+ LYPD6,ENSG00000187123,8,1,Lamp5 Lhx6
136
+ LYPD6B,ENSG00000150556,8,1,Sncg
137
+ LYVE1,ENSG00000133800,8,1,Microglia-PVM
138
+ MAG,ENSG00000105695,5,1,Oligodendrocyte
139
+ MAL,ENSG00000172005,6,1,Oligodendrocyte
140
+ MCTP2,ENSG00000140563,8,1,VLMC
141
+ MEIS2,ENSG00000134138,8,1,Astrocyte
142
+ MEPE,ENSG00000152595,8,1,Pvalb
143
+ MGST1,ENSG00000008394,8,1,Glioblastoma (Cancer cells)
144
+ MKI67,ENSG00000148773,8,1,Proliferation
145
+ MOBP,ENSG00000168314,8,1,Oligodendrocyte
146
+ MOG,ENSG00000204655,8,1,Oligodendrocyte
147
+ MS4A6A,ENSG00000110077,8,1,Glioblastoma (TME)
148
+ MYO16,ENSG00000041515,8,1,Lamp5 Lhx6
149
+ MYO5B,ENSG00000167306,8,1,Pvalb
150
+ MYRF,ENSG00000124920,8,1,Oligodendrocyte
151
+ NCSTN,ENSG00000162736,8,1,Oligodendrocyte
152
+ NDST4,ENSG00000138653,8,1,Sst Chodl
153
+ NES,ENSG00000132688,8,1,Astrocyte
154
+ NKG7,ENSG00000105374,2,1,Glioblastoma (TME)
155
+ NNAT,ENSG00000053438,4,1,Glioblastoma (Cancer cells)
156
+ NOTCH1,ENSG00000148400,8,1,Endothelial
157
+ NPFFR2,ENSG00000056291,8,1,L6b
158
+ NPNT,ENSG00000168743,8,1,Chandelier
159
+ NPY1R,ENSG00000164128,8,1,L6 IT Car3
160
+ NR2F2,ENSG00000185551,8,1,VLMC
161
+ NR4A2,ENSG00000153234,8,1,Glioblastoma (TME)
162
+ NRP1,ENSG00000099250,8,1,Endothelial
163
+ NTNG1,ENSG00000162631,8,1,Lamp5 Lhx6
164
+ NTNG2,ENSG00000196358,8,1,L6 IT Car3
165
+ NWD2,ENSG00000174145,8,1,L6 IT Car3
166
+ NXPH2,ENSG00000144227,8,1,Sst Chodl
167
+ OLIG1,ENSG00000184221,6,1,OPC
168
+ OLIG2,ENSG00000205927,8,1,OPC
169
+ OPALIN,ENSG00000197430,8,1,Oligodendrocyte
170
+ OTOGL,ENSG00000165899,8,1,L4 IT
171
+ P2RY12,ENSG00000169313,8,1,Microglia-PVM
172
+ P2RY13,ENSG00000181631,8,1,Microglia-PVM
173
+ PAX6,ENSG00000007372,8,1,Astrocyte
174
+ PCNA,ENSG00000132646,8,1,Proliferation
175
+ PCSK1,ENSG00000175426,8,1,L5 ET
176
+ PCSK6,ENSG00000140479,8,1,Oligodendrocyte
177
+ PDGFD,ENSG00000170962,8,1,Lamp5 Lhx6
178
+ PDGFRA,ENSG00000134853,8,1,OPC
179
+ PECAM1,ENSG00000261371,8,1,Endothelial
180
+ PHLDB2,ENSG00000144824,8,1,VLMC
181
+ PLCE1,ENSG00000138193,8,1,VLMC
182
+ PLCH1,ENSG00000114805,8,1,Sst
183
+ PLD5,ENSG00000180287,8,1,Pax6
184
+ POSTN,ENSG00000133110,8,1,L6 IT Car3
185
+ POU6F2,ENSG00000106536,8,1,L4 IT
186
+ PROX1,ENSG00000117707,8,1,Sncg
187
+ PSEN1,ENSG00000080815,8,1,Oligodendrocyte
188
+ PSEN2,ENSG00000143801,8,1,Glioblastoma (Cancer cells)
189
+ PSENEN,ENSG00000205155,8,1,Glioblastoma (Cancer cells)
190
+ PTCHD4,ENSG00000244694,8,1,Lamp5
191
+ PTPRC,ENSG00000081237,8,1,Microglia-PVM
192
+ PTPRZ1,ENSG00000106278,8,1,OPC
193
+ PVALB,ENSG00000100362,4,1,Chandelier
194
+ RASGRP1,ENSG00000172575,8,1,L6 IT Car3
195
+ RELN,ENSG00000189056,8,1,Pax6
196
+ RFTN1,ENSG00000131378,8,1,VLMC
197
+ RGS10,ENSG00000148908,6,1,Glioblastoma (TME)
198
+ RGS16,ENSG00000143333,8,1,Microglia-PVM
199
+ RIT2,ENSG00000152214,8,1,L5 ET
200
+ RNASET2,ENSG00000026297,8,1,Glioblastoma (TME)
201
+ RNF144B,ENSG00000137393,8,1,Endothelial
202
+ RORB,ENSG00000198963,8,1,L4 IT
203
+ ROS1,ENSG00000047936,8,1,L6b
204
+ RSPO2,ENSG00000147655,8,1,Pvalb
205
+ RXFP1,ENSG00000171509,8,1,L5 IT
206
+ RYR3,ENSG00000198838,8,1,Astrocyte
207
+ S100A4,ENSG00000196154,4,1,Glioblastoma (TME)
208
+ SAMD5,ENSG00000203727,8,1,Pvalb
209
+ SDK1,ENSG00000146555,8,1,Chandelier
210
+ SEMA5A,ENSG00000112902,8,1,OPC
211
+ SERPINA3,ENSG00000196136,8,1,VLMC
212
+ SFRP2,ENSG00000145423,8,1,Pax6
213
+ SLC17A6,ENSG00000091664,8,1,L4 IT
214
+ SLC17A7,ENSG00000104888,8,1,L6b
215
+ SLC24A3,ENSG00000185052,8,1,Vip
216
+ SLC26A4,ENSG00000091137,8,1,L6 IT Car3
217
+ SLIT3,ENSG00000184347,8,1,L5 ET
218
+ SNCG,ENSG00000173267,2,1,L5 ET
219
+ SNTB2,ENSG00000168807,8,1,L6 IT
220
+ SORCS1,ENSG00000108018,8,1,L5 ET
221
+ SOX10,ENSG00000100146,8,1,OPC
222
+ SOX11,ENSG00000176887,8,1,Glioblastoma (Cancer cells)
223
+ SOX2,ENSG00000181449,4,1,Glioblastoma (Cancer cells)
224
+ SOX4,ENSG00000124766,8,1,Glioblastoma (Cancer cells)
225
+ SOX9,ENSG00000125398,8,1,Astrocyte
226
+ SPHKAP,ENSG00000153820,8,1,Lamp5 Lhx6
227
+ SPI1,ENSG00000066336,2,1,Microglia-PVM
228
+ SPON1,ENSG00000262655,8,1,Astrocyte
229
+ SST,ENSG00000157005,2,1,Sst Chodl
230
+ ST18,ENSG00000147488,8,1,Oligodendrocyte
231
+ STAT3,ENSG00000168610,8,1,Endothelial
232
+ STK32B,ENSG00000152953,8,1,OPC
233
+ STXBP2,ENSG00000076944,8,1,Glioblastoma (TME)
234
+ SULF1,ENSG00000137573,8,1,Pvalb
235
+ SYNPR,ENSG00000163630,8,1,Sst
236
+ TAC1,ENSG00000006128,8,1,Sst Chodl
237
+ TACR1,ENSG00000115353,8,1,Sst Chodl
238
+ TENM1,ENSG00000009694,8,1,Chandelier
239
+ TESPA1,ENSG00000135426,8,1,L2/3 IT
240
+ TGFB1,ENSG00000105329,7,1,Microglia-PVM
241
+ TGFB2,ENSG00000092969,8,1,Astrocyte
242
+ TGFBI,ENSG00000120708,8,1,Glioblastoma (TME)
243
+ THBS1,ENSG00000137801,8,1,Astrocyte
244
+ THEMIS,ENSG00000172673,8,1,L6 IT Car3
245
+ THSD4,ENSG00000187720,8,1,Endothelial
246
+ THSD7B,ENSG00000144229,8,1,Sncg
247
+ TMEM132C,ENSG00000181234,8,1,VLMC
248
+ TMIGD3,ENSG00000121933,8,1,Glioblastoma (TME)
249
+ TOP2A,ENSG00000131747,8,1,Proliferation
250
+ TP53,ENSG00000141510,8,1,Glioblastoma (Cancer cells)
251
+ TPH2,ENSG00000139287,8,1,L5/6 NP
252
+ TRAC,ENSG00000277734,8,1,Glioblastoma (TME)
253
+ TREM2,ENSG00000095970,7,1,Microglia-PVM
254
+ TRHDE,ENSG00000072657,7,1,Sst
255
+ TRIL,ENSG00000255690,8,1,Glioblastoma (Cancer cells)
256
+ TRPC5,ENSG00000072315,7,1,L6 IT Car3
257
+ TRPC6,ENSG00000137672,8,1,Sst Chodl
258
+ TSHZ2,ENSG00000182463,8,1,L5/6 NP
259
+ TTYH1,ENSG00000167614,4,1,Glioblastoma (Cancer cells)
260
+ UGT8,ENSG00000174607,8,1,Oligodendrocyte
261
+ UNC5B,ENSG00000107731,8,1,Chandelier
262
+ VCAN,ENSG00000038427,4,1,OPC
263
+ VIP,ENSG00000146469,8,1,Vip
264
+ VWC2L,ENSG00000174453,8,1,L5/6 NP
265
+ WIF1,ENSG00000156076,8,1,Pax6
266
+ ZBBX,ENSG00000169064,8,1,L2/3 IT
267
+ ZDHHC23,ENSG00000184307,8,1,L6 IT Car3