CCA_Analysis.py

import cv2
import numpy as np
from imutils import perspective
from scipy.spatial import distance as dist
def midpoint(ptA, ptB):
	return ((ptA[0] + ptB[0]) * 0.5, (ptA[1] + ptB[1]) * 0.5)
# Load in image, convert to gray scale, and Otsu's threshold

#Function accept cv2 type
#Only useable splitted masks 

def CCA_Analysis(orig_image,predict_image,erode_iteration,open_iteration):
    kernel1 =( np.ones((5,5), dtype=np.float32))
    kernel_sharpening = np.array([[-1,-1,-1], 
                                  [-1,9,-1], 
                                 [-1,-1,-1]])
    image = predict_image
    image2 =orig_image    
    image=cv2.morphologyEx(image, cv2.MORPH_OPEN, kernel1,iterations=open_iteration )
    image = cv2.filter2D(image, -1, kernel_sharpening)
    image=cv2.erode(image,kernel1,iterations =erode_iteration)
    image=cv2.cvtColor(image, cv2.COLOR_BGR2GRAY)
    thresh = cv2.threshold(image, 0, 255, cv2.THRESH_BINARY + cv2.THRESH_OTSU)[1]
    labels=cv2.connectedComponents(thresh,connectivity=8)[1]       
    a=np.unique(labels)
    count2=0
    for label in a:
        if label == 0:
            continue
    
        # Create a mask
        mask = np.zeros(thresh.shape, dtype="uint8")
        mask[labels == label] = 255
        # Find contours and determine contour area
        cnts,hieararch = cv2.findContours(mask.copy(), cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_SIMPLE)
        cnts = cnts[0]
        c_area = cv2.contourArea(cnts)
        # threshhold for tooth count
        if c_area>2000:
            count2+=1
        
        (x,y),radius = cv2.minEnclosingCircle(cnts)
        rect = cv2.minAreaRect(cnts)
        box = cv2.boxPoints(rect)
        box = np.array(box, dtype="int")    
        box = perspective.order_points(box)
        color1 = (list(np.random.choice(range(150), size=3)))  
        color =[int(color1[0]), int(color1[1]), int(color1[2])]  
        cv2.drawContours(image2,[box.astype("int")],0,color,2)
        (tl,tr,br,bl)=box
        
        (tltrX,tltrY)=midpoint(tl,tr)
        (blbrX,blbrY)=midpoint(bl,br)
    	# compute the midpoint between the top-left and top-right points,
    	# followed by the midpoint between the top-righ and bottom-right
        (tlblX,tlblY)=midpoint(tl,bl)
        (trbrX,trbrY)=midpoint(tr,br)
    	# draw the midpoints on the image
        cv2.circle(image2, (int(tltrX), int(tltrY)), 5, (255, 0, 0), -1)
        cv2.circle(image2, (int(blbrX), int(blbrY)), 5, (255, 0, 0), -1)
        cv2.circle(image2, (int(tlblX), int(tlblY)), 5, (255, 0, 0), -1)
        cv2.circle(image2, (int(trbrX), int(trbrY)), 5, (255, 0, 0), -1)
        cv2.line(image2, (int(tltrX), int(tltrY)), (int(blbrX), int(blbrY)),color, 2)
        cv2.line(image2, (int(tlblX), int(tlblY)), (int(trbrX), int(trbrY)),color, 2)
        dA = dist.euclidean((tltrX, tltrY), (blbrX, blbrY))
        dB = dist.euclidean((tlblX, tlblY), (trbrX, trbrY))
        
        
        
        pixelsPerMetric=1
        dimA = dA * pixelsPerMetric
        dimB = dB *pixelsPerMetric
        cv2.putText(image2, "{:.1f}pixel".format(dimA),(int(tltrX - 15), int(tltrY - 10)), cv2.FONT_HERSHEY_SIMPLEX,0.65, color, 2)
        cv2.putText(image2, "{:.1f}pixel".format(dimB),(int(trbrX + 10), int(trbrY)), cv2.FONT_HERSHEY_SIMPLEX,0.65, color, 2)
        cv2.putText(image2, "{:.1f}".format(label),(int(tltrX - 35), int(tltrY - 5)), cv2.FONT_HERSHEY_SIMPLEX,0.65, color, 2)
    teeth_count=count2
    return image2,teeth_count