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Browse files- README.md +219 -212
- config.json +34 -24
- model.py +244 -0
- model.safetensors +3 -0
- preprocessor_config.json +14 -0
- pytorch_model.bin +3 -0
README.md
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| Total Parameters | 1,327,235 |
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---
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#
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**Run Name:** `L32_64_128_256_Res_SE_lr5e-04_d0.3`
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### Architecture
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|-----------|-------|
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| Conv Layers | [32, 64, 128, 256] |
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| FC Layers | [256, 128] |
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| Kernel Size | 3x3 |
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| Pooling | MaxPool 2x2 |
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| Batch Normalization | Yes |
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| Activation | ReLU |
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| Residual Connections | **Yes** |
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| SE Attention | **Yes** |
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|-----------|-------|
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| Batch Size | 32 |
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| Focal Loss Gamma | 2.0 |
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| Label Smoothing | 0.1 |
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| Data Augmentation | Yes |
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---
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##
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### Per-Class Metrics
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|-------|-----------|--------|----------|---------|
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| **Type 1** | 79.26% | 61.49% | 69.26% | 348 |
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| **Type 2** | 58.09% | 75.29% | 65.58% | 348 |
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| **Type 3** | 64.40% | 59.77% | 62.00% | 348 |
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| **Macro Avg** | 67.25% | 65.52% | **65.61%** | 1044 |
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```
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```
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###
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---
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##
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| Residual | Yes, No |
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| SE Attention | Yes, No |
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### Top 10 Configurations
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| Rank | Configuration | Accuracy | Key Features |
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| 1 | L32_64_128_256_Res_SE_lr5e-04_d0.3 | **65.52%** | 4-layer, Res+SE |
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| 2 | L64_128_256_Res_SE_lr5e-04_d0.3 | 65.04% | 3-layer, Res+SE |
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| 3 | L32_64_128_256_Res_SE_lr1e-04_d0.3 | 64.94% | 4-layer, lower LR |
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| 4 | L64_128_256_Res_SE_lr1e-04_d0.3 | 64.37% | 3-layer, lower LR |
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| 5 | L32_64_128_256_Res_SE_lr5e-04_d0.4 | 64.18% | Higher dropout |
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| 6 | L32_64_128_256_Res_lr5e-04_d0.4 | 64.08% | No SE |
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| 7 | L32_64_128_256_Res_lr1e-04_d0.3 | 63.60% | No SE, lower LR |
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| 8 | L32_64_128_256_Res_SE_lr1e-04_d0.4 | 63.51% | Lower LR, higher dropout |
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| 9 | L64_128_256_Res_SE_lr5e-04_d0.4 | 63.22% | 3-layer, higher dropout |
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| 10 | L64_128_256_Res_SE_lr1e-04_d0.4 | 63.12% | 3-layer, lower LR |
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### Key Findings
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| Finding | Evidence |
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|---------|----------|
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| **Residual + SE is critical** | Top 10 models all use residual connections; top 4 use both Res+SE |
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| **4-layer network is better** | [32,64,128,256] outperforms [64,128,256] |
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| **Higher LR (5e-4) preferred** | 5e-4 consistently beats 1e-4 |
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| **Lower dropout (0.3) preferred** | 0.3 dropout outperforms 0.4 |
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| **Plain CNN performs worst** | Models without Res or SE are at the bottom |
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### What Worked vs What Didn't
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| Worked | Didn't Work |
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|--------|-------------|
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| Residual connections | Plain convolutions |
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| SE attention blocks | No attention |
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| 4 conv layers | 3 conv layers |
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| LR = 5e-4 | LR = 1e-4 (too slow) |
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| Dropout = 0.3 | Dropout = 0.4 (too aggressive) |
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| Focal Loss | - |
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| Label smoothing 0.1 | - |
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---
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##
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###
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##
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### Best Model Location
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./best_model.pth (this folder)
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```
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/data/downloads/cervical_type/_output/grid_search_v2_20260117_212011/run_001_L32_64_128_256_Res_SE_lr5e-04_d0.3/
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```
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###
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```python
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"optimizer_state_dict": ...,
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"scheduler_state_dict": ...,
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"metrics": {...},
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"model_config": {...}
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}
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```
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#
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| `grid_search_summary.json` | All 32 grid search results |
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| `README.md` | This file |
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# Create model with same config
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model = BaseCNN(
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conv_layers=[32, 64, 128, 256],
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fc_layers=[256, 128],
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num_classes=3,
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dropout=0.3,
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use_residual=True,
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use_se_attention=True
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)
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# Load weights
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model.load_state_dict(checkpoint['model_state_dict'])
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model.eval()
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```
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_output/
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└── grid_search_v2_20260117_212011/
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├── grid_search_config.json # Search space definition
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├── all_results.json # All 32 run results
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├── summary.json # Sorted results + best run
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├── logs/
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│ └── grid_search.log
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└── run_001_.../ # Best run
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├── checkpoints/
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│ ├── best_model.pth # Best validation accuracy
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│ ├── latest.pth # Final epoch
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│ └── epoch_*.pth # Periodic saves
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└── logs/
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├── run_config.json
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└── training_history.json
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```
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##
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| Version | Accuracy | Improvement |
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| v1 Baseline | 61.69% | - |
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| **v2 Best (Res+SE)** | **65.52%** | **+3.83%** |
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5. **Test Time Augmentation** - Average predictions over augmented versions
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6. **More training data** - Current ~7k samples may be limiting
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##
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```bash
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# Run the best configuration
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python train_grid_v2.py
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```
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---
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license: mit
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tags:
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- image-classification
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- medical-imaging
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- cervical-cancer
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- pytorch
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- safetensors
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- cnn
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datasets:
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- custom
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metrics:
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- accuracy
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- f1
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pipeline_tag: image-classification
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library_name: pytorch
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---
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# CerviGuard - Cervical Transformation Zone Classifier
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## Model Description
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This model classifies cervical images into 3 transformation zone types, which is important for colposcopy evaluation and cervical cancer screening.
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| Label | Type | Description |
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| 0 | Type 1 | Transformation zone fully visible on ectocervix |
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| 1 | Type 2 | Transformation zone partially visible (extends into endocervical canal) |
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| 2 | Type 3 | Transformation zone not visible (entirely within endocervical canal) |
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## Model Architecture
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### Overview
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**BaseCNN** - A simple convolutional neural network with 4 conv blocks and 2 fully connected layers.
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```
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┌─────────────────────────────────────────────────────────────┐
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│ INPUT (256×256×3) │
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└─────────────────────────────────────────────────────────────┘
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│
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┌─────────────────────────────────────────────────────────────┐
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│ CONV BLOCK 1 │
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│ Conv2d(3→32, 3×3) → BatchNorm2d → ReLU → MaxPool2d(2×2) │
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│ Output: 128×128×32 │
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└─────────────────────────────────────────────────────────────┘
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│
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┌─────────────────────────────────────────────────────────────┐
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│ CONV BLOCK 2 │
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│ Conv2d(32→64, 3×3) → BatchNorm2d → ReLU → MaxPool2d(2×2) │
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│ Output: 64×64×64 │
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└─────────────────────────────────────────────────────────────┘
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│
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┌─────────────────────────────────────────────────────────────┐
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│ CONV BLOCK 3 │
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│ Conv2d(64→128, 3×3) → BatchNorm2d → ReLU → MaxPool2d(2×2) │
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│ Output: 32×32×128 │
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└─────────────────────────────────────────────────────────────┘
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│
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┌─────────────────────────────────────────────────────────────┐
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│ CONV BLOCK 4 │
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│ Conv2d(128→256, 3×3) → BatchNorm2d → ReLU → MaxPool2d(2×2)│
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│ Output: 16×16×256 │
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└─────────────────────────────────────────────────────────────┘
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│
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┌─────────────────────────────────────────────────────────────┐
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│ GLOBAL POOLING │
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│ AdaptiveAvgPool2d(1×1) │
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│ Output: 1×1×256 → Flatten → 256 │
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└─────────────────────────────────────────────────────────────┘
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│
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┌─────────────────────────────────────────────────────────────┐
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│ FC BLOCK 1 │
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│ Linear(256→256) → ReLU → Dropout(0.4) │
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└─────────────────────────────────────────────────────────────┘
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│
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┌─────────────────────────────────────────────────────────────┐
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│ FC BLOCK 2 │
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│ Linear(256→128) → ReLU → Dropout(0.4) │
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└─────────────────────────────────────────────────────────────┘
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│
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┌─────────────────────────────────────────────────────────────┐
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│ CLASSIFIER │
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│ Linear(128→3) │
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└─────────────────────────────────────────────────────────────┘
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│
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┌─────────────────────────────────────────────────────────────┐
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│ OUTPUT (3 logits) │
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│ [Type 1, Type 2, Type 3] │
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└─────────────────────────────────────────────────────────────┘
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```
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### Layer Details
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| Layer | Type | In Channels | Out Channels | Kernel | Output Size |
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|-------|------|-------------|--------------|--------|-------------|
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| conv_layers.0 | Conv2d | 3 | 32 | 3×3 | 256×256×32 |
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| 100 |
+
| conv_layers.1 | BatchNorm2d | 32 | 32 | - | 256×256×32 |
|
| 101 |
+
| conv_layers.2 | ReLU | - | - | - | 256×256×32 |
|
| 102 |
+
| conv_layers.3 | MaxPool2d | - | - | 2×2 | 128×128×32 |
|
| 103 |
+
| conv_layers.4 | Conv2d | 32 | 64 | 3×3 | 128×128×64 |
|
| 104 |
+
| conv_layers.5 | BatchNorm2d | 64 | 64 | - | 128×128×64 |
|
| 105 |
+
| conv_layers.6 | ReLU | - | - | - | 128×128×64 |
|
| 106 |
+
| conv_layers.7 | MaxPool2d | - | - | 2×2 | 64×64×64 |
|
| 107 |
+
| conv_layers.8 | Conv2d | 64 | 128 | 3×3 | 64×64×128 |
|
| 108 |
+
| conv_layers.9 | BatchNorm2d | 128 | 128 | - | 64×64×128 |
|
| 109 |
+
| conv_layers.10 | ReLU | - | - | - | 64×64×128 |
|
| 110 |
+
| conv_layers.11 | MaxPool2d | - | - | 2×2 | 32×32×128 |
|
| 111 |
+
| conv_layers.12 | Conv2d | 128 | 256 | 3×3 | 32×32×256 |
|
| 112 |
+
| conv_layers.13 | BatchNorm2d | 256 | 256 | - | 32×32×256 |
|
| 113 |
+
| conv_layers.14 | ReLU | - | - | - | 32×32×256 |
|
| 114 |
+
| conv_layers.15 | MaxPool2d | - | - | 2×2 | 16×16×256 |
|
| 115 |
+
| adaptive_pool | AdaptiveAvgPool2d | - | - | - | 1×1×256 |
|
| 116 |
+
| fc_layers.0 | Linear | 256 | 256 | - | 256 |
|
| 117 |
+
| fc_layers.1 | ReLU | - | - | - | 256 |
|
| 118 |
+
| fc_layers.2 | Dropout | - | - | p=0.4 | 256 |
|
| 119 |
+
| fc_layers.3 | Linear | 256 | 128 | - | 128 |
|
| 120 |
+
| fc_layers.4 | ReLU | - | - | - | 128 |
|
| 121 |
+
| fc_layers.5 | Dropout | - | - | p=0.4 | 128 |
|
| 122 |
+
| classifier | Linear | 128 | 3 | - | 3 |
|
| 123 |
+
|
| 124 |
+
### Model Summary
|
| 125 |
+
|
| 126 |
+
| Property | Value |
|
| 127 |
+
|----------|-------|
|
| 128 |
+
| **Total Parameters** | 488,451 |
|
| 129 |
+
| **Trainable Parameters** | 488,451 |
|
| 130 |
+
| **Input Size** | (B, 3, 256, 256) |
|
| 131 |
+
| **Output Size** | (B, 3) |
|
| 132 |
+
| **Model Size** | ~1.9 MB |
|
| 133 |
|
| 134 |
---
|
| 135 |
|
| 136 |
+
## Training Configuration
|
| 137 |
+
|
| 138 |
+
| Parameter | Value |
|
| 139 |
+
|-----------|-------|
|
| 140 |
+
| Learning Rate | 1e-4 |
|
| 141 |
+
| Batch Size | 32 |
|
| 142 |
+
| Dropout | 0.4 |
|
| 143 |
+
| Optimizer | Adam |
|
| 144 |
+
| Loss Function | CrossEntropyLoss |
|
| 145 |
+
| Epochs | 50 |
|
| 146 |
+
| Best Epoch | 41 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 147 |
|
| 148 |
---
|
| 149 |
|
| 150 |
+
## Performance
|
| 151 |
|
| 152 |
+
| Metric | Value |
|
| 153 |
+
|--------|-------|
|
| 154 |
+
| **Validation Accuracy** | 61.69% |
|
| 155 |
+
| **Macro F1 Score** | 61.81% |
|
| 156 |
|
| 157 |
+
### Per-Class Performance
|
| 158 |
|
| 159 |
+
| Type | Precision | Recall | F1 Score |
|
| 160 |
+
|------|-----------|--------|----------|
|
| 161 |
+
| Type 1 | - | - | 68.32% |
|
| 162 |
+
| Type 2 | - | - | 56.41% |
|
| 163 |
+
| Type 3 | - | - | 60.69% |
|
| 164 |
|
| 165 |
---
|
| 166 |
|
| 167 |
+
## Usage
|
|
|
|
|
|
|
| 168 |
|
| 169 |
+
### Installation
|
|
|
|
|
|
|
| 170 |
|
| 171 |
+
```bash
|
| 172 |
+
pip install torch torchvision safetensors huggingface_hub
|
|
|
|
| 173 |
```
|
| 174 |
|
| 175 |
+
### Quick Start (Local)
|
| 176 |
|
| 177 |
```python
|
| 178 |
+
import torch
|
| 179 |
+
from PIL import Image
|
| 180 |
+
from torchvision import transforms
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 181 |
|
| 182 |
+
# Load model
|
| 183 |
+
from model import BaseCNN
|
| 184 |
+
model = BaseCNN.from_pretrained("./")
|
| 185 |
+
model.eval()
|
| 186 |
|
| 187 |
+
# Preprocess image
|
| 188 |
+
transform = transforms.Compose([
|
| 189 |
+
transforms.Resize((256, 256)),
|
| 190 |
+
transforms.ToTensor(),
|
| 191 |
+
])
|
|
|
|
|
|
|
| 192 |
|
| 193 |
+
image = Image.open("cervical_image.jpg").convert("RGB")
|
| 194 |
+
input_tensor = transform(image).unsqueeze(0)
|
| 195 |
|
| 196 |
+
# Inference
|
| 197 |
+
with torch.no_grad():
|
| 198 |
+
output = model(input_tensor)
|
| 199 |
+
probabilities = torch.softmax(output, dim=1)
|
| 200 |
+
prediction = output.argmax(dim=1).item()
|
| 201 |
|
| 202 |
+
labels = ["Type 1", "Type 2", "Type 3"]
|
| 203 |
+
print(f"Prediction: {labels[prediction]}")
|
| 204 |
+
print(f"Confidence: {probabilities[0][prediction]:.2%}")
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 205 |
```
|
| 206 |
|
| 207 |
+
### Load from Hugging Face Hub
|
| 208 |
|
| 209 |
+
```python
|
| 210 |
+
from huggingface_hub import hf_hub_download
|
| 211 |
+
from safetensors.torch import load_file
|
| 212 |
+
import torch
|
| 213 |
+
import json
|
| 214 |
+
import importlib.util
|
| 215 |
+
|
| 216 |
+
# Download files
|
| 217 |
+
repo_id = "toderian/cerviguard_transfer_zones"
|
| 218 |
+
model_weights = hf_hub_download(repo_id, "model.safetensors")
|
| 219 |
+
config_file = hf_hub_download(repo_id, "config.json")
|
| 220 |
+
model_file = hf_hub_download(repo_id, "model.py")
|
| 221 |
+
|
| 222 |
+
# Load model class dynamically
|
| 223 |
+
spec = importlib.util.spec_from_file_location("model", model_file)
|
| 224 |
+
model_module = importlib.util.module_from_spec(spec)
|
| 225 |
+
spec.loader.exec_module(model_module)
|
| 226 |
+
|
| 227 |
+
# Load config and create model
|
| 228 |
+
with open(config_file) as f:
|
| 229 |
+
config = json.load(f)
|
| 230 |
+
|
| 231 |
+
model = model_module.BaseCNN(**config['model_config'])
|
| 232 |
+
model.load_state_dict(load_file(model_weights))
|
| 233 |
+
model.eval()
|
| 234 |
|
| 235 |
+
# Now use model for inference
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 236 |
```
|
| 237 |
|
| 238 |
---
|
| 239 |
|
| 240 |
+
## Files in This Repository
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 241 |
|
| 242 |
+
| File | Description |
|
| 243 |
+
|------|-------------|
|
| 244 |
+
| `model.safetensors` | Model weights (SafeTensors format, recommended) |
|
| 245 |
+
| `pytorch_model.bin` | Model weights (PyTorch format, backup) |
|
| 246 |
+
| `config.json` | Model architecture configuration |
|
| 247 |
+
| `model.py` | Model class definition (BaseCNN) |
|
| 248 |
+
| `preprocessor_config.json` | Image preprocessing configuration |
|
| 249 |
+
| `README.md` | This model card |
|
| 250 |
|
| 251 |
---
|
| 252 |
|
| 253 |
+
## Limitations
|
| 254 |
|
| 255 |
+
- Model was trained on a specific dataset and may not generalize to all cervical imaging equipment
|
| 256 |
+
- Type 2 classification has lower accuracy (56.41% F1) as it represents an intermediate state
|
| 257 |
+
- Input images should be 256×256 RGB
|
| 258 |
+
- This is a custom PyTorch model, not compatible with `transformers.AutoModel`
|
|
|
|
|
|
|
| 259 |
|
| 260 |
---
|
| 261 |
|
| 262 |
+
## Citation
|
|
|
|
|
|
|
|
|
|
|
|
|
| 263 |
|
| 264 |
+
```bibtex
|
| 265 |
+
@misc{cerviguard-transfer-zones,
|
| 266 |
+
title={CerviGuard Cervical Transformation Zone Classifier},
|
| 267 |
+
author={toderian},
|
| 268 |
+
year={2026},
|
| 269 |
+
howpublished={\url{https://huggingface.co/toderian/cerviguard_transfer_zones}}
|
| 270 |
+
}
|
| 271 |
```
|
| 272 |
|
| 273 |
---
|
| 274 |
|
| 275 |
+
## License
|
| 276 |
+
|
| 277 |
+
MIT License
|
config.json
CHANGED
|
@@ -1,26 +1,36 @@
|
|
| 1 |
{
|
| 2 |
-
"
|
| 3 |
-
"
|
| 4 |
-
|
| 5 |
-
|
| 6 |
-
|
| 7 |
-
|
| 8 |
-
|
| 9 |
-
|
| 10 |
-
|
| 11 |
-
|
| 12 |
-
|
| 13 |
-
|
| 14 |
-
|
| 15 |
-
|
| 16 |
-
|
| 17 |
-
|
| 18 |
-
|
| 19 |
-
|
| 20 |
-
|
| 21 |
-
|
| 22 |
-
|
| 23 |
-
|
| 24 |
-
|
| 25 |
-
"
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 26 |
}
|
|
|
|
| 1 |
{
|
| 2 |
+
"model_type": "BaseCNN",
|
| 3 |
+
"model_config": {
|
| 4 |
+
"layers": [
|
| 5 |
+
32,
|
| 6 |
+
64,
|
| 7 |
+
128,
|
| 8 |
+
256
|
| 9 |
+
],
|
| 10 |
+
"kernel": 3,
|
| 11 |
+
"padding": 1,
|
| 12 |
+
"stride": 1,
|
| 13 |
+
"batchnorm": true,
|
| 14 |
+
"bn_pre_activ": true,
|
| 15 |
+
"activation": "ReLU",
|
| 16 |
+
"dropout": 0.4,
|
| 17 |
+
"pool": true,
|
| 18 |
+
"fc_layers": [
|
| 19 |
+
256,
|
| 20 |
+
128
|
| 21 |
+
],
|
| 22 |
+
"nr_classes": 3,
|
| 23 |
+
"in_channels": 3
|
| 24 |
+
},
|
| 25 |
+
"num_labels": 3,
|
| 26 |
+
"id2label": {
|
| 27 |
+
"0": "Type 1",
|
| 28 |
+
"1": "Type 2",
|
| 29 |
+
"2": "Type 3"
|
| 30 |
+
},
|
| 31 |
+
"label2id": {
|
| 32 |
+
"Type 1": 0,
|
| 33 |
+
"Type 2": 1,
|
| 34 |
+
"Type 3": 2
|
| 35 |
+
}
|
| 36 |
}
|
model.py
ADDED
|
@@ -0,0 +1,244 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
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|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
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|
|
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|
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|
|
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|
|
|
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|
|
|
|
| 1 |
+
"""
|
| 2 |
+
Cervical Type Classification Model
|
| 3 |
+
|
| 4 |
+
This module contains the BaseCNN model for classifying cervical images
|
| 5 |
+
into 3 transformation zone types.
|
| 6 |
+
|
| 7 |
+
Usage:
|
| 8 |
+
from model import BaseCNN
|
| 9 |
+
|
| 10 |
+
# Load pretrained model
|
| 11 |
+
model = BaseCNN.from_pretrained("./")
|
| 12 |
+
|
| 13 |
+
# Or create from scratch
|
| 14 |
+
model = BaseCNN(
|
| 15 |
+
layers=[32, 64, 128, 256],
|
| 16 |
+
fc_layers=[256, 128],
|
| 17 |
+
nr_classes=3
|
| 18 |
+
)
|
| 19 |
+
"""
|
| 20 |
+
|
| 21 |
+
import json
|
| 22 |
+
from pathlib import Path
|
| 23 |
+
|
| 24 |
+
import torch
|
| 25 |
+
import torch.nn as nn
|
| 26 |
+
|
| 27 |
+
try:
|
| 28 |
+
from safetensors.torch import load_file, save_file
|
| 29 |
+
HAS_SAFETENSORS = True
|
| 30 |
+
except ImportError:
|
| 31 |
+
HAS_SAFETENSORS = False
|
| 32 |
+
|
| 33 |
+
|
| 34 |
+
class BaseCNN(nn.Module):
|
| 35 |
+
"""
|
| 36 |
+
Simple CNN for cervical type classification.
|
| 37 |
+
|
| 38 |
+
Classifies cervical images into 3 transformation zone types:
|
| 39 |
+
- Type 1: Transformation zone fully visible on ectocervix
|
| 40 |
+
- Type 2: Transformation zone partially visible
|
| 41 |
+
- Type 3: Transformation zone not visible (within endocervical canal)
|
| 42 |
+
|
| 43 |
+
Args:
|
| 44 |
+
layers: List of output channels for each conv layer. Default: [32, 64, 128, 256]
|
| 45 |
+
kernel: Kernel size for conv layers. Default: 3
|
| 46 |
+
padding: Padding for conv layers. Default: 1
|
| 47 |
+
stride: Stride for conv layers. Default: 1
|
| 48 |
+
batchnorm: Whether to use batch normalization. Default: True
|
| 49 |
+
bn_pre_activ: Whether to apply BN before activation. Default: True
|
| 50 |
+
activation: Activation function name. Default: 'ReLU'
|
| 51 |
+
dropout: Dropout rate for FC layers. Default: 0.4
|
| 52 |
+
pool: Whether to use max pooling after each conv. Default: True
|
| 53 |
+
fc_layers: List of FC layer sizes. Default: [256, 128]
|
| 54 |
+
nr_classes: Number of output classes. Default: 3
|
| 55 |
+
in_channels: Number of input channels. Default: 3
|
| 56 |
+
"""
|
| 57 |
+
|
| 58 |
+
def __init__(
|
| 59 |
+
self,
|
| 60 |
+
layers: list = None,
|
| 61 |
+
kernel: int = 3,
|
| 62 |
+
padding: int = 1,
|
| 63 |
+
stride: int = 1,
|
| 64 |
+
batchnorm: bool = True,
|
| 65 |
+
bn_pre_activ: bool = True,
|
| 66 |
+
activation: str = 'ReLU',
|
| 67 |
+
dropout: float = 0.4,
|
| 68 |
+
pool: bool = True,
|
| 69 |
+
fc_layers: list = None,
|
| 70 |
+
nr_classes: int = 3,
|
| 71 |
+
in_channels: int = 3,
|
| 72 |
+
):
|
| 73 |
+
super().__init__()
|
| 74 |
+
|
| 75 |
+
# Store config for serialization
|
| 76 |
+
self.config = {
|
| 77 |
+
'layers': layers or [32, 64, 128, 256],
|
| 78 |
+
'kernel': kernel,
|
| 79 |
+
'padding': padding,
|
| 80 |
+
'stride': stride,
|
| 81 |
+
'batchnorm': batchnorm,
|
| 82 |
+
'bn_pre_activ': bn_pre_activ,
|
| 83 |
+
'activation': activation,
|
| 84 |
+
'dropout': dropout,
|
| 85 |
+
'pool': pool,
|
| 86 |
+
'fc_layers': fc_layers or [256, 128],
|
| 87 |
+
'nr_classes': nr_classes,
|
| 88 |
+
'in_channels': in_channels,
|
| 89 |
+
}
|
| 90 |
+
|
| 91 |
+
layers = self.config['layers']
|
| 92 |
+
fc_layers = self.config['fc_layers']
|
| 93 |
+
|
| 94 |
+
# Activation function
|
| 95 |
+
activation_fn = getattr(nn, activation)
|
| 96 |
+
|
| 97 |
+
# Build convolutional layers (ModuleList to match original)
|
| 98 |
+
self.conv_layers = nn.ModuleList()
|
| 99 |
+
prev_channels = in_channels
|
| 100 |
+
|
| 101 |
+
for out_channels in layers:
|
| 102 |
+
self.conv_layers.append(
|
| 103 |
+
nn.Conv2d(prev_channels, out_channels, kernel, stride, padding)
|
| 104 |
+
)
|
| 105 |
+
if batchnorm and bn_pre_activ:
|
| 106 |
+
self.conv_layers.append(nn.BatchNorm2d(out_channels))
|
| 107 |
+
self.conv_layers.append(activation_fn())
|
| 108 |
+
if batchnorm and not bn_pre_activ:
|
| 109 |
+
self.conv_layers.append(nn.BatchNorm2d(out_channels))
|
| 110 |
+
if pool:
|
| 111 |
+
self.conv_layers.append(nn.MaxPool2d(2, 2))
|
| 112 |
+
prev_channels = out_channels
|
| 113 |
+
|
| 114 |
+
# Global average pooling
|
| 115 |
+
self.adaptive_pool = nn.AdaptiveAvgPool2d(1)
|
| 116 |
+
|
| 117 |
+
# Build fully connected layers (ModuleList to match original)
|
| 118 |
+
self.fc_layers = nn.ModuleList()
|
| 119 |
+
prev_features = layers[-1]
|
| 120 |
+
|
| 121 |
+
for fc_size in fc_layers:
|
| 122 |
+
self.fc_layers.append(nn.Linear(prev_features, fc_size))
|
| 123 |
+
self.fc_layers.append(activation_fn())
|
| 124 |
+
self.fc_layers.append(nn.Dropout(dropout))
|
| 125 |
+
prev_features = fc_size
|
| 126 |
+
|
| 127 |
+
# Final classifier (separate, to match original)
|
| 128 |
+
self.classifier = nn.Linear(prev_features, nr_classes)
|
| 129 |
+
|
| 130 |
+
def forward(self, x: torch.Tensor) -> torch.Tensor:
|
| 131 |
+
"""
|
| 132 |
+
Forward pass.
|
| 133 |
+
|
| 134 |
+
Args:
|
| 135 |
+
x: Input tensor of shape (batch_size, 3, 256, 256)
|
| 136 |
+
|
| 137 |
+
Returns:
|
| 138 |
+
Logits tensor of shape (batch_size, num_classes)
|
| 139 |
+
"""
|
| 140 |
+
for layer in self.conv_layers:
|
| 141 |
+
x = layer(x)
|
| 142 |
+
|
| 143 |
+
x = self.adaptive_pool(x)
|
| 144 |
+
x = x.view(x.size(0), -1)
|
| 145 |
+
|
| 146 |
+
for layer in self.fc_layers:
|
| 147 |
+
x = layer(x)
|
| 148 |
+
|
| 149 |
+
x = self.classifier(x)
|
| 150 |
+
return x
|
| 151 |
+
|
| 152 |
+
@classmethod
|
| 153 |
+
def from_pretrained(cls, model_path: str, device: str = 'cpu') -> 'BaseCNN':
|
| 154 |
+
"""
|
| 155 |
+
Load a pretrained model from a directory.
|
| 156 |
+
|
| 157 |
+
Args:
|
| 158 |
+
model_path: Path to directory containing model files
|
| 159 |
+
device: Device to load model on ('cpu' or 'cuda')
|
| 160 |
+
|
| 161 |
+
Returns:
|
| 162 |
+
Loaded model in eval mode
|
| 163 |
+
"""
|
| 164 |
+
model_path = Path(model_path)
|
| 165 |
+
|
| 166 |
+
# Load config
|
| 167 |
+
config_path = model_path / 'config.json'
|
| 168 |
+
with open(config_path, 'r') as f:
|
| 169 |
+
config = json.load(f)
|
| 170 |
+
|
| 171 |
+
# Create model
|
| 172 |
+
model = cls(**config['model_config'])
|
| 173 |
+
|
| 174 |
+
# Load weights (prefer safetensors)
|
| 175 |
+
safetensors_path = model_path / 'model.safetensors'
|
| 176 |
+
pytorch_path = model_path / 'pytorch_model.bin'
|
| 177 |
+
|
| 178 |
+
if safetensors_path.exists() and HAS_SAFETENSORS:
|
| 179 |
+
state_dict = load_file(str(safetensors_path), device=device)
|
| 180 |
+
elif pytorch_path.exists():
|
| 181 |
+
state_dict = torch.load(pytorch_path, map_location=device, weights_only=True)
|
| 182 |
+
else:
|
| 183 |
+
raise FileNotFoundError(f"No model weights found in {model_path}")
|
| 184 |
+
|
| 185 |
+
model.load_state_dict(state_dict)
|
| 186 |
+
model.to(device)
|
| 187 |
+
model.eval()
|
| 188 |
+
return model
|
| 189 |
+
|
| 190 |
+
def save_pretrained(self, save_path: str) -> None:
|
| 191 |
+
"""
|
| 192 |
+
Save model in Hugging Face compatible format.
|
| 193 |
+
|
| 194 |
+
Args:
|
| 195 |
+
save_path: Directory to save model files
|
| 196 |
+
"""
|
| 197 |
+
save_path = Path(save_path)
|
| 198 |
+
save_path.mkdir(parents=True, exist_ok=True)
|
| 199 |
+
|
| 200 |
+
# Save config
|
| 201 |
+
config = {
|
| 202 |
+
'model_type': 'BaseCNN',
|
| 203 |
+
'model_config': self.config,
|
| 204 |
+
'num_labels': self.config['nr_classes'],
|
| 205 |
+
'id2label': {
|
| 206 |
+
'0': 'Type 1',
|
| 207 |
+
'1': 'Type 2',
|
| 208 |
+
'2': 'Type 3'
|
| 209 |
+
},
|
| 210 |
+
'label2id': {
|
| 211 |
+
'Type 1': 0,
|
| 212 |
+
'Type 2': 1,
|
| 213 |
+
'Type 3': 2
|
| 214 |
+
}
|
| 215 |
+
}
|
| 216 |
+
with open(save_path / 'config.json', 'w') as f:
|
| 217 |
+
json.dump(config, f, indent=2)
|
| 218 |
+
|
| 219 |
+
# Save weights
|
| 220 |
+
state_dict = {k: v.contiguous() for k, v in self.state_dict().items()}
|
| 221 |
+
|
| 222 |
+
# SafeTensors format (recommended)
|
| 223 |
+
if HAS_SAFETENSORS:
|
| 224 |
+
save_file(state_dict, str(save_path / 'model.safetensors'))
|
| 225 |
+
|
| 226 |
+
# PyTorch format (backup)
|
| 227 |
+
torch.save(state_dict, save_path / 'pytorch_model.bin')
|
| 228 |
+
|
| 229 |
+
|
| 230 |
+
# Label mappings
|
| 231 |
+
ID2LABEL = {0: 'Type 1', 1: 'Type 2', 2: 'Type 3'}
|
| 232 |
+
LABEL2ID = {'Type 1': 0, 'Type 2': 1, 'Type 3': 2}
|
| 233 |
+
|
| 234 |
+
|
| 235 |
+
if __name__ == '__main__':
|
| 236 |
+
# Quick test
|
| 237 |
+
model = BaseCNN()
|
| 238 |
+
print(f"Model parameters: {sum(p.numel() for p in model.parameters()):,}")
|
| 239 |
+
|
| 240 |
+
# Test forward pass
|
| 241 |
+
x = torch.randn(1, 3, 256, 256)
|
| 242 |
+
y = model(x)
|
| 243 |
+
print(f"Input shape: {x.shape}")
|
| 244 |
+
print(f"Output shape: {y.shape}")
|
model.safetensors
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:beb3e17da6b94596232aa18078b9d22872f4711c7c1ef21a35f3277175d14063
|
| 3 |
+
size 1960588
|
preprocessor_config.json
ADDED
|
@@ -0,0 +1,14 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"do_normalize": true,
|
| 3 |
+
"do_rescale": true,
|
| 4 |
+
"do_resize": true,
|
| 5 |
+
"image_mean": [0.5, 0.5, 0.5],
|
| 6 |
+
"image_std": [0.5, 0.5, 0.5],
|
| 7 |
+
"image_processor_type": "ImageProcessor",
|
| 8 |
+
"resample": 3,
|
| 9 |
+
"rescale_factor": 0.00392156862745098,
|
| 10 |
+
"size": {
|
| 11 |
+
"height": 256,
|
| 12 |
+
"width": 256
|
| 13 |
+
}
|
| 14 |
+
}
|
pytorch_model.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:3d88b2345cde9dcdc7fc2b8ba76edb2c64abfbc274f320bd55ad9e12801c9b00
|
| 3 |
+
size 1969453
|